Wall clock time and date at job start Tue Mar 31 2020 15:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30503 * 125.64793 * 2 1 4 4 C 1.34135 * 109.25508 * 179.97438 * 3 2 1 5 5 C 1.34668 * 108.01699 * 359.73437 * 4 3 2 6 6 N 1.35046 * 125.65150 * 179.97438 * 2 1 3 7 7 C 1.46499 * 126.39816 * 0.03285 * 6 2 1 8 8 C 1.50711 * 109.46846 * 84.99909 * 7 6 2 9 9 O 1.21394 * 119.99787 * 0.02562 * 8 7 6 10 10 C 1.41728 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.37858 * 126.91222 * 0.03311 * 10 8 7 12 12 N 1.34675 * 109.61717 * 179.97438 * 11 10 8 13 13 C 1.46499 * 124.64107 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47304 * 265.02332 * 13 12 11 15 15 H 1.08008 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00194 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00119 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46808 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47104 * 119.99827 * 18 16 14 21 21 H 1.48494 * 109.47228 * 239.99803 * 18 16 14 22 22 C 1.38013 * 110.70982 * 359.97438 * 12 11 10 23 23 C 1.39146 * 133.03603 * 180.02562 * 22 12 11 24 24 C 1.37777 * 119.94804 * 180.02562 * 23 22 12 25 25 C 1.38734 * 120.63488 * 359.91744 * 24 23 22 26 26 C 1.37797 * 120.26939 * 0.04668 * 25 24 23 27 27 C 1.39192 * 119.67314 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.47336 * 270.04018 * 1 2 3 29 29 H 1.08995 * 109.47159 * 30.04206 * 1 2 3 30 30 H 1.08997 * 109.47412 * 150.04480 * 1 2 3 31 31 H 1.07997 * 125.98644 * 180.02562 * 4 3 2 32 32 H 1.08001 * 126.58905 * 180.28228 * 5 4 3 33 33 H 1.09003 * 109.47222 * 325.01034 * 7 6 2 34 34 H 1.08994 * 109.47291 * 205.00051 * 7 6 2 35 35 H 1.08000 * 125.19296 * 0.25919 * 11 10 8 36 36 H 1.09003 * 109.47489 * 25.02779 * 13 12 11 37 37 H 1.09001 * 109.46951 * 145.02258 * 13 12 11 38 38 H 0.97006 * 120.00333 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.03071 * 359.96400 * 23 22 12 40 40 H 1.07992 * 119.68526 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.86627 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.16389 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5544 0.6819 0.0006 5 6 3.5925 -0.6642 0.0069 6 7 2.2941 -1.0974 0.0005 7 6 1.8426 -2.4910 0.0004 8 6 1.5706 -2.9309 -1.4152 9 8 1.7381 -2.1558 -2.3343 10 6 1.1203 -4.2497 -1.6733 11 6 0.8842 -5.2406 -0.7444 12 7 0.4654 -6.3569 -1.3707 13 6 0.1213 -7.6110 -0.6961 14 6 1.3183 -8.5266 -0.6968 15 1 2.2430 -8.2062 -1.1537 16 6 1.2330 -9.7733 -0.1142 17 7 0.1072 -10.1632 0.4425 18 14 2.7169 -10.9080 -0.1144 19 1 3.8521 -10.2380 -0.7983 20 1 3.0986 -11.2240 1.2855 21 1 2.3795 -12.1640 -0.8311 22 6 0.4047 -6.1575 -2.7350 23 6 0.0412 -6.9770 -3.7992 24 6 0.0814 -6.4898 -5.0874 25 6 0.4803 -5.1848 -5.3375 26 6 0.8432 -4.3578 -4.2967 27 6 0.8075 -4.8377 -2.9906 28 1 -0.3634 0.0007 1.0277 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3634 -0.8903 -0.5131 31 1 4.4098 1.3412 0.0011 32 1 4.4776 -1.2831 0.0132 33 1 0.9294 -2.5772 0.5893 34 1 2.6164 -3.1237 0.4352 35 1 1.0109 -5.1362 0.3230 36 1 -0.1752 -7.4013 0.3316 37 1 -0.7040 -8.0916 -1.2214 38 1 0.0472 -11.0402 0.8528 39 1 -0.2712 -7.9944 -3.6158 40 1 -0.2012 -7.1296 -5.9102 41 1 0.5068 -4.8156 -6.3521 42 1 1.1538 -3.3423 -4.4934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123497414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:20 Heat of formation + Delta-G solvation = 66.271261 kcal Electronic energy + Delta-G solvation = -26146.464030 eV Core-core repulsion = 22478.419093 eV Total energy + Delta-G solvation = -3668.044936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.07055 -42.43031 -39.86624 -38.10182 -35.47335 -34.91408 -33.54625 -32.59612 -31.24955 -30.75364 -29.39380 -28.21607 -27.49095 -25.46362 -24.08865 -23.23832 -22.27825 -21.94010 -20.91482 -19.95191 -18.85791 -18.24584 -18.05724 -17.30391 -16.88559 -16.49141 -16.36418 -16.20778 -15.67100 -15.48617 -15.18882 -15.03194 -14.81927 -14.73649 -14.38934 -14.20828 -13.86620 -13.61912 -13.52619 -13.39847 -13.19004 -13.14528 -13.09064 -12.76077 -12.56013 -12.50083 -12.34165 -11.84550 -11.58340 -11.25509 -10.95320 -10.76643 -10.54374 -10.27071 -9.23009 -9.21555 -8.69616 -8.33279 -6.53441 -0.09734 0.52627 0.89415 1.10052 1.35586 1.40498 1.49881 1.83272 1.98660 2.20718 2.21715 2.33857 2.95733 2.99013 3.15527 3.63931 3.73863 3.79561 3.84924 3.93312 4.05960 4.20562 4.23722 4.30935 4.46781 4.55847 4.59718 4.65951 4.69785 4.71189 4.86008 4.87931 4.89960 4.95097 5.03024 5.17141 5.37457 5.52192 5.52813 5.64611 5.72327 5.76325 5.87772 5.89011 6.20681 6.26623 6.30135 6.59901 6.73831 7.17762 7.19495 8.69249 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003499 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.344520 B = 7999.688113 C = 9355.735904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.199 3.801 3 N -0.534 5.534 4 C -0.055 4.055 5 C -0.055 4.055 6 N -0.445 5.445 7 C 0.059 3.941 8 C 0.420 3.580 9 O -0.506 6.506 10 C -0.321 4.321 11 C 0.166 3.834 12 N -0.436 5.436 13 C 0.242 3.758 14 C -0.555 4.555 15 H 0.054 0.946 16 C 0.029 3.971 17 N -0.914 5.914 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.278 1.278 22 C 0.058 3.942 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.099 4.099 27 C -0.080 4.080 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.197 0.803 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.218 0.782 36 H 0.056 0.944 37 H 0.030 0.970 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 10.375 -0.470 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 N -0.254 5.254 4 C -0.201 4.201 5 C -0.187 4.187 6 N -0.127 5.127 7 C -0.064 4.064 8 C 0.304 3.696 9 O -0.387 6.387 10 C -0.330 4.330 11 C 0.025 3.975 12 N -0.110 5.110 13 C 0.123 3.877 14 C -0.593 4.593 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.552 5.552 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.204 1.204 22 C -0.046 4.046 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.150 4.150 26 C -0.118 4.118 27 C -0.083 4.083 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.214 0.786 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.234 0.766 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.540 10.940 -0.710 10.976 hybrid contribution 1.018 -1.867 0.022 2.126 sum 1.558 9.074 -0.688 9.232 Atomic orbital electron populations 1.20275 0.83515 1.04174 1.04641 1.23756 0.96795 0.81420 1.04345 1.70181 1.03404 1.29574 1.22236 1.22629 0.94830 0.93795 1.08885 1.23128 0.87691 0.97022 1.10872 1.45144 1.06695 1.07014 1.53880 1.22528 1.06547 0.80234 0.97085 1.20402 0.73211 0.85337 0.90698 1.90562 1.44596 1.55421 1.48112 1.19596 1.24055 0.97109 0.92262 1.23196 0.90825 0.83569 0.99866 1.44500 1.49067 1.12348 1.05067 1.19556 0.96384 0.78456 0.93310 1.21474 0.97904 1.00932 1.39004 0.92752 1.25595 0.98807 0.98869 0.94011 1.69978 1.26775 1.21335 1.37126 0.85446 0.79159 0.78488 0.78278 1.19736 1.19704 1.20404 1.18625 1.05586 0.95767 0.84622 1.20407 1.03143 0.99076 0.91624 1.21098 1.00297 0.96296 0.95376 1.21261 1.00545 0.93724 0.99504 1.20649 1.00372 1.00011 0.90722 1.19182 1.02558 0.92636 0.93944 0.87910 0.89455 0.90705 0.79878 0.78567 0.82879 0.82872 0.76566 0.92578 0.95201 0.91822 0.86635 0.82957 0.83159 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.04 71.23 0.71 -0.63 16 2 C 0.20 5.37 7.89 138.13 1.09 6.46 16 3 N -0.53 -16.45 11.25 -188.13 -2.12 -18.56 16 4 C -0.05 -1.45 11.87 83.52 0.99 -0.46 16 5 C -0.05 -1.29 11.58 83.09 0.96 -0.33 16 6 N -0.45 -10.79 2.24 -518.33 -1.16 -11.95 16 7 C 0.06 1.11 5.44 85.64 0.47 1.57 16 8 C 0.42 11.81 7.02 26.55 0.19 12.00 16 9 O -0.51 -18.21 16.06 -3.38 -0.05 -18.27 16 10 C -0.32 -9.96 6.11 -20.03 -0.12 -10.08 16 11 C 0.17 4.81 10.71 84.17 0.90 5.71 16 12 N -0.44 -16.17 2.70 -518.65 -1.40 -17.57 16 13 C 0.24 10.36 5.68 85.63 0.49 10.85 16 14 C -0.56 -26.71 9.39 25.60 0.24 -26.47 16 15 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 16 C 0.03 1.42 5.46 84.66 0.46 1.88 16 17 N -0.91 -46.65 13.29 21.45 0.28 -46.36 16 18 Si 0.96 39.14 29.54 68.60 2.03 41.17 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.06 2.19 6.78 38.90 0.26 2.46 16 23 C -0.12 -4.35 9.96 22.38 0.22 -4.13 16 24 C -0.11 -3.24 10.01 22.28 0.22 -3.02 16 25 C -0.13 -3.74 10.03 22.28 0.22 -3.51 16 26 C -0.10 -3.31 9.80 22.39 0.22 -3.09 16 27 C -0.08 -2.88 6.24 -20.06 -0.13 -3.01 16 28 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.43 7.82 -2.39 -0.02 1.42 16 31 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.20 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.15 1.90 7.91 -2.39 -0.02 1.89 16 34 H 0.15 2.01 8.13 -2.39 -0.02 1.99 16 35 H 0.22 4.07 7.91 -2.91 -0.02 4.04 16 36 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 39 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 42 H 0.12 4.03 7.38 -2.91 -0.02 4.01 16 Total: -1.00 -69.08 368.49 6.01 -63.06 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.03 Total: 22.29 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 7.40 Total: -13.81 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -4.40 Total: -94.45 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -69.08 6.01 -63.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123497414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.335 kcal (2) G-P(sol) polarization free energy of solvation -69.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds