Wall clock time and date at job start Tue Mar 31 2020 14:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37922 * 119.93478 * 2 1 4 4 C 1.39593 * 119.86573 * 180.02562 * 3 2 1 5 5 C 1.47787 * 120.12528 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00188 * 314.49950 * 5 4 3 7 7 N 1.34773 * 120.00136 * 134.50750 * 5 4 3 8 8 C 1.46497 * 120.00462 * 185.86037 * 7 5 4 9 9 C 1.50701 * 109.47088 * 89.99930 * 8 7 5 10 10 H 1.07999 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00108 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00326 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46765 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46848 * 120.00129 * 13 11 9 16 16 H 1.48495 * 109.46984 * 240.00205 * 13 11 9 17 17 C 1.46508 * 120.00041 * 5.86069 * 7 5 4 18 18 C 1.53001 * 109.47098 * 98.14358 * 17 7 5 19 19 C 1.52995 * 109.47310 * 185.51872 * 18 17 7 20 20 C 1.52998 * 109.47404 * 174.99869 * 19 18 17 21 21 C 1.52998 * 109.47451 * 295.00604 * 19 18 17 22 22 C 1.39628 * 119.74075 * 359.97438 * 4 3 2 23 23 C 1.37872 * 119.86881 * 359.97438 * 22 4 3 24 24 C 1.38490 * 119.93630 * 179.97438 * 2 1 3 25 25 Cl 1.73600 * 119.86649 * 359.72405 * 24 2 1 26 26 H 1.08998 * 109.47221 * 270.02182 * 1 2 3 27 27 H 1.09002 * 109.47162 * 30.02455 * 1 2 3 28 28 H 1.09005 * 109.46753 * 150.02137 * 1 2 3 29 29 H 1.08004 * 120.06623 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47427 * 209.99921 * 8 7 5 31 31 H 1.09001 * 109.46775 * 330.00088 * 8 7 5 32 32 H 0.96989 * 120.00535 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.47516 * 218.14369 * 17 7 5 34 34 H 1.09001 * 109.46497 * 338.14735 * 17 7 5 35 35 H 1.09000 * 109.47431 * 305.52261 * 18 17 7 36 36 H 1.09003 * 109.46916 * 65.51841 * 18 17 7 37 37 H 1.09001 * 109.46944 * 55.00288 * 19 18 17 38 38 H 1.09001 * 109.46728 * 60.00286 * 20 19 18 39 39 H 1.09000 * 109.47216 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47525 * 300.00796 * 20 19 18 41 41 H 1.09002 * 109.47220 * 59.99239 * 21 19 18 42 42 H 1.09000 * 109.47285 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.46788 * 299.99779 * 21 19 18 44 44 H 1.08003 * 120.06634 * 179.97438 * 22 4 3 45 45 H 1.07999 * 119.93518 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5911 1.1935 -0.0005 5 6 4.3344 2.4709 -0.0011 6 8 4.0020 3.3672 -0.7521 7 7 5.3808 2.6421 0.8308 8 6 6.0369 3.9486 0.9235 9 6 5.3719 4.7696 1.9980 10 1 4.5436 4.3590 2.5564 11 6 5.8208 6.0449 2.2684 12 7 6.8298 6.5447 1.5889 13 14 4.9959 7.0629 3.5999 14 1 3.8944 6.2775 4.2123 15 1 5.9925 7.4139 4.6433 16 1 4.4456 8.3061 3.0028 17 6 5.8622 1.5214 1.6426 18 6 7.0688 0.8767 0.9574 19 6 7.4863 -0.3751 1.7317 20 6 8.6115 -1.0885 0.9794 21 6 7.9781 0.0266 3.1237 22 6 4.2823 -0.0197 -0.0005 23 6 3.5834 -1.2081 0.0005 24 6 2.1981 -1.2001 0.0005 25 17 1.3249 -2.7005 0.0085 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6552 2.1306 -0.0004 30 1 7.0893 3.8100 1.1712 31 1 5.9538 4.4655 -0.0325 32 1 7.1459 7.4417 1.7792 33 1 6.1553 1.8855 2.6272 34 1 5.0677 0.7829 1.7498 35 1 6.8027 0.6008 -0.0630 36 1 7.8970 1.5851 0.9380 37 1 6.6318 -1.0449 1.8276 38 1 9.4660 -0.4187 0.8835 39 1 8.9092 -1.9800 1.5313 40 1 8.2611 -1.3746 -0.0123 41 1 7.1765 0.5349 3.6596 42 1 8.2752 -0.8653 3.6754 43 1 8.8327 0.6964 3.0278 44 1 5.3623 -0.0271 -0.0014 45 1 4.1169 -2.1471 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128560134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:45 Heat of formation + Delta-G solvation = -33.304331 kcal Electronic energy + Delta-G solvation = -25571.542941 eV Core-core repulsion = 22000.287577 eV Total energy + Delta-G solvation = -3571.255364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23493 -38.37600 -36.93525 -36.48486 -34.56794 -33.17078 -32.46910 -30.91579 -29.20654 -27.39815 -27.08241 -26.83037 -24.04954 -23.33392 -22.22629 -21.77112 -19.90489 -18.71406 -17.12242 -16.60210 -16.45447 -16.03375 -15.32325 -15.15304 -14.60282 -14.38379 -14.15339 -14.14170 -13.72481 -13.53742 -13.22110 -12.90283 -12.64339 -12.53093 -12.42587 -12.22391 -12.16911 -11.90849 -11.72589 -11.55069 -11.42798 -11.31667 -11.14762 -10.90046 -10.89366 -10.77875 -10.60816 -10.52796 -10.39028 -10.15934 -9.63592 -9.13504 -8.93077 -8.58654 -8.46176 -7.71693 -6.07554 -4.12506 0.86712 1.21310 1.98951 3.15063 3.27686 3.35515 3.39037 3.64222 3.91746 4.41633 4.62865 4.68245 4.73317 4.89677 4.98093 5.07022 5.16186 5.20490 5.27107 5.37540 5.46576 5.49591 5.50619 5.61041 5.67689 5.72368 5.75105 5.80788 5.89490 5.96023 5.98112 6.08379 6.11985 6.16328 6.22299 6.25226 6.36454 6.45768 6.53953 6.67419 7.02923 7.40424 7.48113 7.88741 8.19215 8.31981 8.83071 8.99038 9.52786 11.00544 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.004280 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.782464 B = 6541.135421 C = 8429.807611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.062 4.062 4 C -0.102 4.102 5 C 0.546 3.454 6 O -0.533 6.533 7 N -0.586 5.586 8 C 0.245 3.755 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.099 3.901 18 C -0.139 4.139 19 C -0.095 4.095 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.028 4.028 25 Cl -0.074 7.074 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.151 0.849 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -19.544 -0.575 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.081 4.081 4 C -0.106 4.106 5 C 0.332 3.668 6 O -0.411 6.411 7 N -0.316 5.316 8 C 0.127 3.873 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.025 4.025 18 C -0.177 4.177 19 C -0.114 4.114 20 C -0.204 4.204 21 C -0.208 4.208 22 C -0.119 4.119 23 C -0.133 4.133 24 C -0.054 4.054 25 Cl -0.045 7.045 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.369 -18.992 -0.974 19.513 hybrid contribution -0.354 0.497 0.812 1.016 sum -4.722 -18.496 -0.162 19.090 Atomic orbital electron populations 1.20864 0.90068 1.03511 1.02986 1.19676 0.96856 0.91041 1.00794 1.21075 0.92663 0.97672 0.96645 1.20371 0.94395 0.94520 1.01270 1.18140 0.80966 0.86238 0.81448 1.90772 1.67208 1.43005 1.40148 1.48168 1.30805 1.13071 1.39533 1.19329 0.92293 0.77160 0.98559 1.21458 1.16930 0.99420 1.18853 0.92380 1.24919 0.95038 0.97423 0.96583 1.69934 1.25851 1.16763 1.40653 0.86460 0.79384 0.80248 0.81458 1.19783 1.20932 1.20841 1.21805 0.95827 0.89115 0.95715 1.22236 0.99483 0.97080 0.98926 1.21087 0.98239 0.96432 0.95596 1.21840 0.98632 1.00048 0.99887 1.21896 1.01772 1.01042 0.96042 1.21877 1.01624 0.90656 0.97713 1.20934 0.91693 0.99007 1.01642 1.20944 0.92347 0.86417 1.05726 1.98345 1.76766 1.32511 1.96865 0.90614 0.90847 0.90875 0.84287 0.94727 0.93619 0.92731 0.89872 0.90652 0.91727 0.90636 0.91262 0.92574 0.92894 0.92861 0.92086 0.93119 0.92416 0.83196 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.60 36.00 0.35 -0.83 16 2 C -0.08 -1.04 5.88 -104.65 -0.62 -1.66 16 3 C -0.06 -0.93 9.34 -39.19 -0.37 -1.30 16 4 C -0.10 -1.69 5.09 -104.97 -0.53 -2.22 16 5 C 0.55 11.55 7.27 -12.36 -0.09 11.46 16 6 O -0.53 -13.56 16.54 5.31 0.09 -13.47 16 7 N -0.59 -12.21 2.46 -176.19 -0.43 -12.64 16 8 C 0.25 6.28 5.22 -5.19 -0.03 6.26 16 9 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C 0.10 1.58 4.49 -4.04 -0.02 1.56 16 18 C -0.14 -1.84 4.06 -26.73 -0.11 -1.95 16 19 C -0.09 -0.99 2.89 -90.62 -0.26 -1.25 16 20 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 21 C -0.15 -1.60 8.95 37.16 0.33 -1.27 16 22 C -0.10 -1.34 7.40 -39.20 -0.29 -1.63 16 23 C -0.11 -1.31 9.81 -39.61 -0.39 -1.70 16 24 C -0.03 -0.33 6.32 -39.38 -0.25 -0.58 16 25 Cl -0.07 -0.76 27.27 -51.86 -1.41 -2.17 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.07 0.67 6.90 -51.93 -0.36 0.31 16 29 H 0.14 2.13 8.06 -52.48 -0.42 1.70 16 30 H 0.03 0.89 7.99 -51.93 -0.41 0.48 16 31 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.39 6.83 -51.93 -0.35 1.04 16 34 H 0.08 1.07 5.03 -51.93 -0.26 0.81 16 35 H 0.06 0.84 6.19 -51.93 -0.32 0.51 16 36 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.69 6.69 -51.93 -0.35 0.34 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.15 1.84 3.67 -52.48 -0.19 1.65 16 45 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -31.53 376.81 -9.54 -41.06 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.82 Total: -0.13 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.35 Total: -9.49 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.30 Total: -38.07 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.53 -9.54 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128560134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.758 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds