Wall clock time and date at job start Tue Mar 31 2020 14:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37922 * 119.93478 * 2 1 4 4 C 1.39593 * 119.86573 * 180.02562 * 3 2 1 5 5 C 1.47787 * 120.12528 * 179.97438 * 4 3 2 6 6 O 1.21563 * 120.00188 * 314.49950 * 5 4 3 7 7 N 1.34773 * 120.00136 * 134.50750 * 5 4 3 8 8 C 1.46497 * 120.00462 * 185.86037 * 7 5 4 9 9 C 1.50701 * 109.47088 * 89.99930 * 8 7 5 10 10 H 1.07999 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00108 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00326 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00050 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46765 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46848 * 120.00129 * 13 11 9 16 16 H 1.48495 * 109.46984 * 240.00205 * 13 11 9 17 17 C 1.46508 * 120.00041 * 5.86069 * 7 5 4 18 18 C 1.53001 * 109.47098 * 98.14358 * 17 7 5 19 19 C 1.52995 * 109.47310 * 185.51872 * 18 17 7 20 20 C 1.52998 * 109.47404 * 174.99869 * 19 18 17 21 21 C 1.52998 * 109.47451 * 295.00604 * 19 18 17 22 22 C 1.39628 * 119.74075 * 359.97438 * 4 3 2 23 23 C 1.37872 * 119.86881 * 359.97438 * 22 4 3 24 24 C 1.38490 * 119.93630 * 179.97438 * 2 1 3 25 25 Cl 1.73600 * 119.86649 * 359.72405 * 24 2 1 26 26 H 1.08998 * 109.47221 * 270.02182 * 1 2 3 27 27 H 1.09002 * 109.47162 * 30.02455 * 1 2 3 28 28 H 1.09005 * 109.46753 * 150.02137 * 1 2 3 29 29 H 1.08004 * 120.06623 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47427 * 209.99921 * 8 7 5 31 31 H 1.09001 * 109.46775 * 330.00088 * 8 7 5 32 32 H 0.96989 * 120.00535 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.47516 * 218.14369 * 17 7 5 34 34 H 1.09001 * 109.46497 * 338.14735 * 17 7 5 35 35 H 1.09000 * 109.47431 * 305.52261 * 18 17 7 36 36 H 1.09003 * 109.46916 * 65.51841 * 18 17 7 37 37 H 1.09001 * 109.46944 * 55.00288 * 19 18 17 38 38 H 1.09001 * 109.46728 * 60.00286 * 20 19 18 39 39 H 1.09000 * 109.47216 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47525 * 300.00796 * 20 19 18 41 41 H 1.09002 * 109.47220 * 59.99239 * 21 19 18 42 42 H 1.09000 * 109.47285 * 179.97438 * 21 19 18 43 43 H 1.09001 * 109.46788 * 299.99779 * 21 19 18 44 44 H 1.08003 * 120.06634 * 179.97438 * 22 4 3 45 45 H 1.07999 * 119.93518 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5911 1.1935 -0.0005 5 6 4.3344 2.4709 -0.0011 6 8 4.0020 3.3672 -0.7521 7 7 5.3808 2.6421 0.8308 8 6 6.0369 3.9486 0.9235 9 6 5.3719 4.7696 1.9980 10 1 4.5436 4.3590 2.5564 11 6 5.8208 6.0449 2.2684 12 7 6.8298 6.5447 1.5889 13 14 4.9959 7.0629 3.5999 14 1 3.8944 6.2775 4.2123 15 1 5.9925 7.4139 4.6433 16 1 4.4456 8.3061 3.0028 17 6 5.8622 1.5214 1.6426 18 6 7.0688 0.8767 0.9574 19 6 7.4863 -0.3751 1.7317 20 6 8.6115 -1.0885 0.9794 21 6 7.9781 0.0266 3.1237 22 6 4.2823 -0.0197 -0.0005 23 6 3.5834 -1.2081 0.0005 24 6 2.1981 -1.2001 0.0005 25 17 1.3249 -2.7005 0.0085 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6552 2.1306 -0.0004 30 1 7.0893 3.8100 1.1712 31 1 5.9538 4.4655 -0.0325 32 1 7.1459 7.4417 1.7792 33 1 6.1553 1.8855 2.6272 34 1 5.0677 0.7829 1.7498 35 1 6.8027 0.6008 -0.0630 36 1 7.8970 1.5851 0.9380 37 1 6.6318 -1.0449 1.8276 38 1 9.4660 -0.4187 0.8835 39 1 8.9092 -1.9800 1.5313 40 1 8.2611 -1.3746 -0.0123 41 1 7.1765 0.5349 3.6596 42 1 8.2752 -0.8653 3.6754 43 1 8.8327 0.6964 3.0278 44 1 5.3623 -0.0271 -0.0014 45 1 4.1169 -2.1471 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128560134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:44 Heat of formation + Delta-G solvation = -49.398356 kcal Electronic energy + Delta-G solvation = -25572.240831 eV Core-core repulsion = 22000.287577 eV Total energy + Delta-G solvation = -3571.953254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58445 -39.67744 -38.17710 -37.42361 -36.13528 -34.81201 -33.87648 -32.11240 -30.60700 -29.01249 -28.04985 -27.82460 -25.72175 -24.69809 -23.58608 -22.94024 -20.83876 -20.20808 -18.64312 -18.25406 -17.98521 -17.39120 -16.78868 -16.28524 -16.25394 -15.67746 -15.44686 -15.11669 -14.86055 -14.69591 -14.48933 -14.26097 -13.98346 -13.76026 -13.46922 -13.39532 -13.26632 -13.11794 -13.03060 -12.85718 -12.67057 -12.64693 -12.53758 -12.39765 -12.26733 -12.12178 -11.85744 -11.74469 -11.57124 -11.45780 -11.39294 -10.81691 -10.66821 -9.98374 -9.66086 -9.48264 -8.24905 -6.39838 -0.25884 0.18733 1.05208 1.34976 1.37115 1.48836 1.69566 2.16648 2.38883 2.57597 3.04916 3.45051 3.66921 3.73639 3.87890 3.98926 4.08634 4.13295 4.18120 4.29925 4.43887 4.50972 4.60810 4.68689 4.75320 4.79780 4.82964 4.86549 4.94065 4.96204 5.02926 5.10821 5.14536 5.17093 5.18512 5.20904 5.24644 5.31164 5.38976 5.51094 5.53581 5.59657 5.64119 5.79361 6.02525 6.61914 6.69949 7.19770 7.35443 8.82668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.004280 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.782464 B = 6541.135421 C = 8429.807611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.076 4.076 4 C -0.125 4.125 5 C 0.540 3.460 6 O -0.592 6.592 7 N -0.589 5.589 8 C 0.262 3.738 9 C -0.545 4.545 10 H 0.052 0.948 11 C 0.011 3.989 12 N -0.926 5.926 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.281 1.281 17 C 0.098 3.902 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.095 4.095 23 C -0.099 4.099 24 C -0.025 4.025 25 Cl -0.050 7.050 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.027 0.973 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.160 0.840 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -22.977 0.677 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.128 4.128 5 C 0.329 3.671 6 O -0.474 6.474 7 N -0.318 5.318 8 C 0.142 3.858 9 C -0.583 4.583 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.565 5.565 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.193 1.193 16 H -0.206 1.206 17 C -0.024 4.024 18 C -0.169 4.169 19 C -0.106 4.106 20 C -0.202 4.202 21 C -0.209 4.209 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.052 4.052 25 Cl -0.021 7.021 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.045 0.955 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.177 0.823 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.330 -22.479 0.301 23.104 hybrid contribution -0.093 1.468 0.385 1.521 sum -5.423 -21.011 0.686 21.710 Atomic orbital electron populations 1.20942 0.88213 1.04301 1.03982 1.19859 0.98167 0.90342 0.99666 1.21031 0.92204 0.98393 0.97912 1.20011 0.94695 0.93081 1.05043 1.18922 0.80521 0.87515 0.80181 1.90718 1.68659 1.45608 1.42453 1.48150 1.30790 1.12704 1.40151 1.18766 0.92177 0.79293 0.95610 1.21695 1.16966 1.00319 1.19336 0.92965 1.25824 0.95555 0.98549 0.98891 1.70049 1.27060 1.17331 1.42107 0.85385 0.78654 0.78229 0.78669 1.19158 1.19316 1.20638 1.22068 0.97586 0.87986 0.94719 1.22166 0.97277 0.97930 0.99555 1.21072 0.99540 0.95056 0.94902 1.21827 0.97674 1.00288 1.00434 1.21914 1.00945 1.01614 0.96456 1.21914 1.02063 0.89989 0.97378 1.21257 0.91601 0.99440 0.99474 1.21119 0.92862 0.87074 1.04161 1.98362 1.76327 1.30768 1.96622 0.89410 0.90570 0.89616 0.85788 0.95547 0.98222 0.92327 0.90937 0.88229 0.91150 0.92964 0.89081 0.93612 0.91118 0.92026 0.93097 0.91044 0.93752 0.82260 0.81079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.60 71.23 0.68 -1.41 16 2 C -0.08 -1.86 5.88 -19.88 -0.12 -1.98 16 3 C -0.08 -2.32 9.34 22.52 0.21 -2.11 16 4 C -0.13 -4.17 5.09 -20.09 -0.10 -4.28 16 5 C 0.54 24.15 7.27 86.77 0.63 24.78 16 6 O -0.59 -32.48 16.54 -3.92 -0.06 -32.55 16 7 N -0.59 -25.93 2.46 -829.63 -2.04 -27.98 16 8 C 0.26 14.40 5.22 85.63 0.45 14.85 16 9 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 11 C 0.01 0.64 5.46 84.65 0.46 1.11 16 12 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 13 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 C 0.10 3.18 4.49 86.38 0.39 3.56 16 18 C -0.13 -3.45 4.06 30.59 0.12 -3.32 16 19 C -0.09 -1.62 2.89 -10.80 -0.03 -1.65 16 20 C -0.14 -2.32 9.19 71.98 0.66 -1.65 16 21 C -0.15 -3.03 8.95 71.98 0.64 -2.38 16 22 C -0.10 -2.35 7.40 22.52 0.17 -2.18 16 23 C -0.10 -1.90 9.81 22.25 0.22 -1.69 16 24 C -0.03 -0.52 6.32 22.40 0.14 -0.38 16 25 Cl -0.05 -0.83 27.27 -2.72 -0.07 -0.90 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 28 H 0.09 1.31 6.90 -2.38 -0.02 1.29 16 29 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.03 1.47 7.99 -2.39 -0.02 1.45 16 31 H 0.00 -0.02 7.35 -2.39 -0.02 -0.04 16 32 H 0.27 15.16 8.31 -92.72 -0.77 14.39 16 33 H 0.07 2.49 6.83 -2.39 -0.02 2.48 16 34 H 0.10 2.73 5.03 -2.39 -0.01 2.72 16 35 H 0.07 1.77 6.19 -2.39 -0.01 1.76 16 36 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 1.11 6.69 -2.39 -0.02 1.09 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.16 3.57 3.67 -2.91 -0.01 3.56 16 45 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -73.03 376.81 5.88 -67.15 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.98 Total: 13.26 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 4.77 Total: -10.24 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.76 Total: -83.85 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.06 Total: -32.55 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -73.03 5.88 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128560134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.753 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds