Wall clock time and date at job start Tue Mar 31 2020 14:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37916 * 119.93424 * 2 1 4 4 C 1.39598 * 119.86976 * 180.02562 * 3 2 1 5 5 C 1.47778 * 120.13013 * 179.97438 * 4 3 2 6 6 O 1.21557 * 120.00229 * 329.87004 * 5 4 3 7 7 N 1.34777 * 119.99838 * 149.87595 * 5 4 3 8 8 C 1.46501 * 119.99968 * 6.31966 * 7 5 4 9 9 C 1.50709 * 109.46949 * 98.51093 * 8 7 5 10 10 H 1.08003 * 119.99718 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00295 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00115 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46811 * 89.99849 * 13 11 9 15 15 H 1.48497 * 109.47407 * 209.99878 * 13 11 9 16 16 H 1.48504 * 109.47030 * 330.00117 * 13 11 9 17 17 C 1.46501 * 120.00235 * 186.32211 * 7 5 4 18 18 C 1.53000 * 109.47282 * 88.95046 * 17 7 5 19 19 C 1.52997 * 109.46718 * 63.55146 * 18 17 7 20 20 C 1.52995 * 109.47343 * 183.54977 * 18 17 7 21 21 C 1.52995 * 109.46941 * 303.55216 * 18 17 7 22 22 C 1.39634 * 119.73478 * 359.97438 * 4 3 2 23 23 C 1.37870 * 119.86941 * 359.97438 * 22 4 3 24 24 C 1.38490 * 119.93755 * 179.97438 * 2 1 3 25 25 Cl 1.73598 * 119.86598 * 359.72145 * 24 2 1 26 26 H 1.08995 * 109.46962 * 270.01698 * 1 2 3 27 27 H 1.09001 * 109.47322 * 30.02240 * 1 2 3 28 28 H 1.09003 * 109.46771 * 150.02229 * 1 2 3 29 29 H 1.08002 * 120.06500 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47083 * 218.50354 * 8 7 5 31 31 H 1.08997 * 109.47155 * 338.51311 * 8 7 5 32 32 H 0.96997 * 120.00361 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.47452 * 208.95946 * 17 7 5 34 34 H 1.09005 * 109.46887 * 328.95215 * 17 7 5 35 35 H 1.08993 * 109.47399 * 59.99846 * 19 18 17 36 36 H 1.09006 * 109.47222 * 180.02562 * 19 18 17 37 37 H 1.09008 * 109.46843 * 299.99746 * 19 18 17 38 38 H 1.09001 * 109.47292 * 59.99581 * 20 18 17 39 39 H 1.08996 * 109.47227 * 180.02562 * 20 18 17 40 40 H 1.09009 * 109.47077 * 300.00468 * 20 18 17 41 41 H 1.09001 * 109.47675 * 65.37940 * 21 18 17 42 42 H 1.09009 * 109.47138 * 185.37855 * 21 18 17 43 43 H 1.09001 * 109.47299 * 305.37198 * 21 18 17 44 44 H 1.08001 * 120.06333 * 179.97438 * 22 4 3 45 45 H 1.08001 * 119.93572 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1952 0.0000 4 6 3.5912 1.1936 -0.0005 5 6 4.3344 2.4709 -0.0011 6 8 3.8530 3.4540 -0.5296 7 7 5.5461 2.5457 0.5842 8 6 6.1874 1.3329 1.0982 9 6 7.1875 0.8277 0.0902 10 1 7.3306 1.3568 -0.8404 11 6 7.9188 -0.3106 0.3556 12 7 7.7441 -0.9552 1.4886 13 14 9.1577 -0.9373 -0.8940 14 1 10.4834 -0.3232 -0.6275 15 1 9.2658 -2.4144 -0.7861 16 1 8.7091 -0.5723 -2.2618 17 6 6.2220 3.8397 0.7065 18 6 5.8058 4.5107 2.0170 19 6 6.2772 3.6596 3.1977 20 6 6.4418 5.8995 2.1034 21 6 4.2822 4.6438 2.0603 22 6 4.2824 -0.0197 -0.0005 23 6 3.5835 -1.2081 0.0005 24 6 2.1981 -1.2001 0.0005 25 17 1.3250 -2.7005 0.0085 26 1 -0.3633 0.0003 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6552 2.1305 -0.0004 30 1 6.6982 1.5607 2.0338 31 1 5.4307 0.5684 1.2739 32 1 8.2589 -1.7558 1.6755 33 1 7.3013 3.6878 0.7028 34 1 5.9420 4.4766 -0.1327 35 1 7.3625 3.5647 3.1669 36 1 5.9803 4.1374 4.1315 37 1 5.8240 2.6701 3.1362 38 1 6.1061 6.5059 1.2621 39 1 6.1456 6.3773 3.0372 40 1 7.5273 5.8046 2.0724 41 1 3.8316 3.6520 2.0952 42 1 3.9917 5.2063 2.9477 43 1 3.9378 5.1683 1.1690 44 1 5.3624 -0.0271 -0.0014 45 1 4.1170 -2.1471 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128827148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:03 Heat of formation + Delta-G solvation = -24.946803 kcal Electronic energy + Delta-G solvation = -26353.679484 eV Core-core repulsion = 22782.786530 eV Total energy + Delta-G solvation = -3570.892955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67042 -39.86882 -38.08373 -37.42057 -36.41174 -34.34256 -33.68521 -31.92854 -29.78036 -28.25487 -28.13777 -27.84946 -27.17931 -25.09754 -23.89146 -22.82229 -20.69783 -19.56785 -18.63999 -17.94941 -17.80610 -17.28495 -16.61103 -16.33458 -16.15027 -15.53580 -15.25034 -15.09342 -14.88751 -14.55049 -14.50653 -14.40488 -14.07941 -13.54955 -13.33782 -13.30885 -13.11361 -13.04643 -12.86811 -12.76335 -12.62368 -12.49416 -12.44538 -12.39723 -12.16022 -12.02092 -11.97187 -11.71019 -11.53901 -11.48845 -11.33790 -10.78155 -10.51477 -9.89289 -9.51883 -9.34671 -8.22273 -6.37540 -0.21850 0.30960 1.06499 1.40278 1.44627 1.52252 1.81220 2.26739 2.41631 2.73972 3.05928 3.63968 3.79403 3.83274 3.91416 3.95257 4.07581 4.25196 4.36965 4.53709 4.59144 4.66939 4.68683 4.76034 4.80202 4.82684 4.89785 4.90705 4.93371 4.95619 5.06082 5.07679 5.17794 5.21674 5.24643 5.30930 5.34864 5.35637 5.46007 5.49047 5.54330 5.66250 5.80577 5.87424 6.02555 6.56174 6.79846 7.25983 7.37701 8.80646 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008983 B = 0.005843 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.329856 B = 4790.852144 C = 7182.378883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.060 4.060 4 C -0.145 4.145 5 C 0.555 3.445 6 O -0.583 6.583 7 N -0.582 5.582 8 C 0.216 3.784 9 C -0.550 4.550 10 H 0.051 0.949 11 C 0.036 3.964 12 N -0.903 5.903 13 Si 0.946 3.054 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.274 1.274 17 C 0.127 3.873 18 C -0.080 4.080 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.019 4.019 25 Cl -0.057 7.057 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.271 0.729 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.184 0.816 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 3.199 1.578 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.079 4.079 4 C -0.148 4.148 5 C 0.344 3.656 6 O -0.466 6.466 7 N -0.310 5.310 8 C 0.096 3.904 9 C -0.588 4.588 10 H 0.069 0.931 11 C -0.167 4.167 12 N -0.540 5.540 13 Si 0.772 3.228 14 H -0.200 1.200 15 H -0.204 1.204 16 H -0.199 1.199 17 C 0.004 3.996 18 C -0.081 4.081 19 C -0.193 4.193 20 C -0.187 4.187 21 C -0.181 4.181 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.046 4.046 25 Cl -0.027 7.027 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.161 0.839 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.200 0.800 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.501 3.408 1.439 10.196 hybrid contribution 1.093 -0.850 -0.591 1.505 sum -8.408 2.558 0.849 8.829 Atomic orbital electron populations 1.20885 0.87566 1.04334 1.03900 1.19894 0.98370 0.90102 1.01233 1.21108 0.91745 0.98364 0.96725 1.20142 0.94872 0.93465 1.06285 1.18361 0.81492 0.87668 0.78033 1.90635 1.69811 1.38557 1.47621 1.47976 1.16964 1.09774 1.56270 1.20170 0.93291 0.82405 0.94490 1.21545 1.22393 1.10761 1.04100 0.93065 1.25508 0.97941 0.96387 0.96818 1.69991 1.41349 1.18766 1.23931 0.85731 0.79699 0.77753 0.79646 1.20032 1.20360 1.19899 1.21526 0.96813 0.83717 0.97562 1.20929 0.96108 0.96524 0.94580 1.21897 1.00741 0.99148 0.97470 1.21738 1.00613 0.93896 1.02497 1.21740 0.94603 1.00251 1.01500 1.23162 1.04997 0.90948 0.93277 1.21145 0.92199 0.99255 1.01905 1.21155 0.92072 0.87413 1.03943 1.98332 1.76104 1.31630 1.96677 0.89496 0.89731 0.90238 0.83859 0.95038 0.92340 0.91994 0.90821 0.91566 0.92975 0.91479 0.94151 0.92412 0.91009 0.92052 0.95389 0.91559 0.93148 0.79963 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.60 71.24 0.68 -1.60 16 2 C -0.10 -2.77 5.88 -19.88 -0.12 -2.88 16 3 C -0.06 -2.02 9.24 22.52 0.21 -1.81 16 4 C -0.14 -5.75 5.58 -20.09 -0.11 -5.86 16 5 C 0.55 23.59 5.67 86.77 0.49 24.09 16 6 O -0.58 -25.97 14.66 -3.90 -0.06 -26.03 16 7 N -0.58 -24.32 2.01 -829.63 -1.66 -25.98 16 8 C 0.22 9.94 3.91 85.64 0.33 10.28 16 9 C -0.55 -27.27 7.49 25.60 0.19 -27.08 16 10 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 11 C 0.04 1.80 5.34 84.65 0.45 2.25 16 12 N -0.90 -46.42 13.29 21.45 0.28 -46.14 16 13 Si 0.95 40.14 29.54 68.60 2.03 42.16 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 C 0.13 4.66 4.59 86.38 0.40 5.06 16 18 C -0.08 -2.45 0.85 -52.19 -0.04 -2.50 16 19 C -0.14 -4.20 7.46 71.98 0.54 -3.67 16 20 C -0.13 -3.11 8.47 71.98 0.61 -2.50 16 21 C -0.12 -3.86 7.12 71.98 0.51 -3.35 16 22 C -0.11 -4.35 7.48 22.52 0.17 -4.18 16 23 C -0.13 -4.53 9.81 22.25 0.22 -4.32 16 24 C -0.02 -0.59 6.32 22.40 0.14 -0.44 16 25 Cl -0.06 -1.45 27.27 -2.72 -0.07 -1.53 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 28 H 0.08 1.53 6.90 -2.39 -0.02 1.51 16 29 H 0.14 4.42 7.93 -2.91 -0.02 4.39 16 30 H 0.03 1.52 5.78 -2.39 -0.01 1.51 16 31 H 0.06 2.82 4.05 -2.43 -0.01 2.81 16 32 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.07 2.76 8.06 -2.39 -0.02 2.74 16 34 H 0.07 2.50 7.37 -2.38 -0.02 2.48 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.04 1.45 5.84 -2.38 -0.01 1.44 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.03 0.98 6.64 -2.39 -0.02 0.96 16 42 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.05 1.68 7.28 -2.39 -0.02 1.66 16 44 H 0.18 8.50 3.08 -2.91 -0.01 8.49 16 45 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -54.79 365.07 6.18 -48.61 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.99 Total: 27.42 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.67 Total: -18.52 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.38 Total: -72.12 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.06 Total: -26.03 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.53 kcal Total: -54.79 6.18 -48.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128827148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.663 kcal (2) G-P(sol) polarization free energy of solvation -54.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds