Wall clock time and date at job start Tue Mar 31 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39231 * 119.15067 * 2 1 4 4 C 1.36637 * 119.89705 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15551 * 359.97438 * 4 3 2 6 6 C 1.40481 * 121.24760 * 180.02562 * 5 4 3 7 7 C 1.36321 * 120.08339 * 179.69949 * 6 5 4 8 8 C 1.38916 * 121.04869 * 0.56309 * 7 6 5 9 9 C 1.38699 * 120.73106 * 359.43533 * 8 7 6 10 10 C 1.47444 * 120.33164 * 180.29844 * 9 8 7 11 11 O 1.21609 * 119.99745 * 235.02076 * 10 9 8 12 12 N 1.34777 * 119.99925 * 55.02574 * 10 9 8 13 13 C 1.46500 * 119.99841 * 185.56295 * 12 10 9 14 14 C 1.50697 * 109.47390 * 89.99418 * 13 12 10 15 15 H 1.07999 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99819 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99644 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00133 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47135 * 89.99926 * 18 16 14 20 20 H 1.48503 * 109.46780 * 210.00012 * 18 16 14 21 21 H 1.48494 * 109.47046 * 329.99889 * 18 16 14 22 22 C 1.46501 * 120.00086 * 5.55475 * 12 10 9 23 23 C 1.53002 * 109.46630 * 94.97006 * 22 12 10 24 24 C 1.47201 * 109.46783 * 180.02562 * 23 22 12 25 25 N 7.27248 * 121.97993 * 121.99191 * 2 1 3 26 26 C 1.41551 * 118.95010 * 0.02562 * 5 4 3 27 27 N 1.31236 * 119.15460 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47536 * 269.98125 * 1 2 3 29 29 H 1.08997 * 109.47195 * 29.98654 * 1 2 3 30 30 H 1.08999 * 109.46929 * 149.98229 * 1 2 3 31 31 H 1.07994 * 120.05105 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.91748 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.96143 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.47478 * 180.29357 * 7 6 5 35 35 H 1.08007 * 119.62923 * 179.70766 * 8 7 6 36 36 H 1.08998 * 109.47204 * 209.99829 * 13 12 10 37 37 H 1.09003 * 109.47006 * 329.99599 * 13 12 10 38 38 H 0.97003 * 119.99726 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.46764 * 214.97096 * 22 12 10 40 40 H 1.09002 * 109.46853 * 334.97245 * 22 12 10 41 41 H 1.08997 * 109.46896 * 299.99425 * 23 22 12 42 42 H 1.08996 * 109.47245 * 60.00071 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2319 0.0012 -0.0005 6 6 5.6355 -0.0563 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5502 -2.4509 0.0004 9 6 4.1632 -2.4393 0.0004 10 6 3.4080 -3.7057 0.0013 11 8 2.5780 -3.9192 -0.8614 12 7 3.6374 -4.6264 0.9585 13 6 2.9777 -5.9327 0.8914 14 6 3.8415 -6.8925 0.1146 15 1 4.7876 -6.5627 -0.2885 16 6 3.4245 -8.1921 -0.0806 17 7 4.1787 -9.0299 -0.7581 18 14 1.7885 -8.7629 0.6172 19 1 0.7158 -8.5311 -0.3831 20 1 1.8644 -10.2116 0.9350 21 1 1.4849 -8.0000 1.8545 22 6 4.5467 -4.3209 2.0658 23 6 3.7403 -3.8103 3.2617 24 6 4.6539 -3.5028 4.3741 25 7 5.3586 -3.2682 5.2319 26 6 3.4787 -1.1973 -0.0005 27 7 2.1463 -1.1461 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6322 2.1436 -0.0004 32 1 4.0942 2.1675 -0.0001 33 1 6.2127 0.8564 -0.0009 34 1 7.3494 -1.2956 0.0105 35 1 6.0764 -3.3941 0.0007 36 1 2.8261 -6.3154 1.9007 37 1 2.0134 -5.8276 0.3941 38 1 3.8852 -9.9441 -0.8958 39 1 5.0878 -5.2231 2.3510 40 1 5.2563 -3.5552 1.7525 41 1 3.1992 -2.9081 2.9764 42 1 3.0306 -4.5760 3.5749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131900879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:30 Heat of formation + Delta-G solvation = 54.112394 kcal Electronic energy + Delta-G solvation = -26740.382188 eV Core-core repulsion = 23071.810003 eV Total energy + Delta-G solvation = -3668.572184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08301 -39.17117 -37.16789 -36.85574 -35.25630 -33.59749 -32.71347 -32.09832 -30.95528 -30.44796 -28.10334 -27.70460 -24.42145 -23.80467 -23.62013 -22.55371 -21.68399 -18.94956 -18.35767 -17.61787 -17.14196 -16.78382 -16.46909 -16.09291 -15.61255 -14.86268 -14.75180 -14.68921 -14.39497 -14.14126 -13.86875 -13.70626 -13.28279 -13.17365 -13.02547 -12.80381 -12.60200 -12.44218 -12.36068 -12.25848 -12.03177 -11.86517 -11.58605 -11.44588 -11.36050 -11.01550 -10.81617 -10.62211 -10.48073 -10.18368 -9.64560 -9.53377 -9.06345 -8.75747 -8.60345 -8.26920 -7.82843 -6.10405 -4.09842 0.17426 0.71130 1.77549 2.72413 2.74281 2.82806 3.29161 3.34659 3.36561 3.38111 3.57923 4.01930 4.10108 4.12432 4.38614 4.43912 4.61227 4.67823 4.74902 4.93234 4.99744 5.06537 5.15502 5.20280 5.21881 5.24868 5.37783 5.48316 5.49657 5.57734 5.76270 5.80255 5.86010 5.91642 5.95410 6.06409 6.19473 6.23957 6.39242 6.64667 6.70523 6.93815 7.25015 7.57139 7.58412 7.94040 8.12059 8.43681 8.86945 8.93711 9.49546 11.02724 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004355 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.689730 B = 6427.322848 C = 7129.453295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.158 3.842 3 C -0.174 4.174 4 C -0.056 4.056 5 C -0.112 4.112 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.071 4.071 9 C -0.091 4.091 10 C 0.566 3.434 11 O -0.507 6.507 12 N -0.588 5.588 13 C 0.216 3.784 14 C -0.532 4.532 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.874 3.126 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.264 1.264 22 C 0.109 3.891 23 C -0.050 4.050 24 C 0.219 3.781 25 N -0.444 5.444 26 C 0.164 3.836 27 N -0.455 5.455 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 21.684 4.154 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.194 4.194 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.104 4.104 7 C -0.137 4.137 8 C -0.091 4.091 9 C -0.095 4.095 10 C 0.351 3.649 11 O -0.382 6.382 12 N -0.320 5.320 13 C 0.096 3.904 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.534 5.534 18 Si 0.701 3.299 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.017 4.017 23 C -0.091 4.091 24 C -0.099 4.099 25 N -0.122 5.122 26 C 0.041 3.959 27 N -0.163 5.163 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.901 20.824 4.888 21.409 hybrid contribution -0.455 0.269 -0.087 0.536 sum -1.356 21.093 4.801 21.675 Atomic orbital electron populations 1.20790 0.88642 1.03820 1.03250 1.21578 0.97339 0.88001 0.92560 1.21716 0.95042 0.99243 1.03385 1.21432 0.94455 0.97000 0.95299 1.18773 0.94814 0.93833 1.04029 1.21057 0.92497 0.98553 0.98292 1.20852 1.00573 0.91879 1.00379 1.21483 0.92429 0.99521 0.95708 1.20067 0.93587 0.93023 1.02848 1.17727 0.82571 0.82217 0.82339 1.90790 1.32755 1.77945 1.36671 1.47755 1.45912 1.15724 1.22567 1.19734 0.94462 0.78749 0.97501 1.21312 1.06621 0.94490 1.34605 0.90622 1.24836 0.96913 0.96473 0.94624 1.69892 1.37670 1.05569 1.40291 0.86878 0.84745 0.78090 0.80166 1.19850 1.21144 1.18912 1.21531 0.92066 1.02539 0.85538 1.19846 0.95663 1.04342 0.89265 1.29005 0.93947 0.92864 0.94113 1.81133 1.10111 1.09592 1.11343 1.18513 0.89117 0.91375 0.96919 1.67923 1.08127 1.28427 1.11852 0.90171 0.90677 0.89873 0.84637 0.84373 0.85164 0.84890 0.83986 0.94910 0.93997 0.92527 0.88587 0.89800 0.87715 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.15 36.00 0.37 -0.64 16 2 C 0.16 1.95 6.78 -82.48 -0.56 1.39 16 3 C -0.17 -1.65 9.64 -39.79 -0.38 -2.04 16 4 C -0.06 -0.53 9.89 -39.19 -0.39 -0.92 16 5 C -0.11 -1.36 5.74 -106.82 -0.61 -1.97 16 6 C -0.09 -0.84 9.75 -39.43 -0.38 -1.23 16 7 C -0.12 -1.23 9.93 -40.02 -0.40 -1.63 16 8 C -0.07 -0.95 7.44 -39.16 -0.29 -1.24 16 9 C -0.09 -1.50 4.93 -104.61 -0.52 -2.02 16 10 C 0.57 11.50 6.79 -12.51 -0.08 11.42 16 11 O -0.51 -12.60 16.36 5.27 0.09 -12.51 16 12 N -0.59 -11.26 2.46 -176.32 -0.43 -11.69 16 13 C 0.22 4.92 4.29 -5.20 -0.02 4.89 16 14 C -0.53 -14.49 9.94 -34.44 -0.34 -14.84 16 15 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 16 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 18 Si 0.87 20.88 27.47 -169.99 -4.67 16.21 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 22 C 0.11 1.58 5.18 -4.04 -0.02 1.56 16 23 C -0.05 -0.59 6.02 -29.52 -0.18 -0.77 16 24 C 0.22 2.85 15.43 -20.80 -0.32 2.53 16 25 N -0.44 -6.78 18.53 42.10 0.78 -6.00 16 26 C 0.16 2.54 6.60 -84.58 -0.56 1.98 16 27 N -0.45 -7.36 9.48 -7.01 -0.07 -7.43 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.83 7.55 -52.48 -0.40 1.43 16 36 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 37 H 0.04 1.04 6.78 -51.93 -0.35 0.69 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.08 1.08 4.42 -51.93 -0.23 0.85 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -36.15 366.22 -7.96 -44.11 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.16 Total: -0.55 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.79 Total: -1.53 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 1.05 Total: -51.25 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.15 -7.96 -44.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131900879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.224 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds