Wall clock time and date at job start Tue Mar 31 2020 14:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39231 * 119.15067 * 2 1 4 4 C 1.36637 * 119.89705 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15551 * 359.97438 * 4 3 2 6 6 C 1.40481 * 121.24760 * 180.02562 * 5 4 3 7 7 C 1.36321 * 120.08339 * 179.69949 * 6 5 4 8 8 C 1.38916 * 121.04869 * 0.56309 * 7 6 5 9 9 C 1.38699 * 120.73106 * 359.43533 * 8 7 6 10 10 C 1.47444 * 120.33164 * 180.29844 * 9 8 7 11 11 O 1.21609 * 119.99745 * 235.02076 * 10 9 8 12 12 N 1.34777 * 119.99925 * 55.02574 * 10 9 8 13 13 C 1.46500 * 119.99841 * 185.56295 * 12 10 9 14 14 C 1.50697 * 109.47390 * 89.99418 * 13 12 10 15 15 H 1.07999 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99819 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99644 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00133 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47135 * 89.99926 * 18 16 14 20 20 H 1.48503 * 109.46780 * 210.00012 * 18 16 14 21 21 H 1.48494 * 109.47046 * 329.99889 * 18 16 14 22 22 C 1.46501 * 120.00086 * 5.55475 * 12 10 9 23 23 C 1.53002 * 109.46630 * 94.97006 * 22 12 10 24 24 C 1.47201 * 109.46783 * 180.02562 * 23 22 12 25 25 N 7.27248 * 121.97993 * 121.99191 * 2 1 3 26 26 C 1.41551 * 118.95010 * 0.02562 * 5 4 3 27 27 N 1.31236 * 119.15460 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47536 * 269.98125 * 1 2 3 29 29 H 1.08997 * 109.47195 * 29.98654 * 1 2 3 30 30 H 1.08999 * 109.46929 * 149.98229 * 1 2 3 31 31 H 1.07994 * 120.05105 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.91748 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.96143 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.47478 * 180.29357 * 7 6 5 35 35 H 1.08007 * 119.62923 * 179.70766 * 8 7 6 36 36 H 1.08998 * 109.47204 * 209.99829 * 13 12 10 37 37 H 1.09003 * 109.47006 * 329.99599 * 13 12 10 38 38 H 0.97003 * 119.99726 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.46764 * 214.97096 * 22 12 10 40 40 H 1.09002 * 109.46853 * 334.97245 * 22 12 10 41 41 H 1.08997 * 109.46896 * 299.99425 * 23 22 12 42 42 H 1.08996 * 109.47245 * 60.00071 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2319 0.0012 -0.0005 6 6 5.6355 -0.0563 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5502 -2.4509 0.0004 9 6 4.1632 -2.4393 0.0004 10 6 3.4080 -3.7057 0.0013 11 8 2.5780 -3.9192 -0.8614 12 7 3.6374 -4.6264 0.9585 13 6 2.9777 -5.9327 0.8914 14 6 3.8415 -6.8925 0.1146 15 1 4.7876 -6.5627 -0.2885 16 6 3.4245 -8.1921 -0.0806 17 7 4.1787 -9.0299 -0.7581 18 14 1.7885 -8.7629 0.6172 19 1 0.7158 -8.5311 -0.3831 20 1 1.8644 -10.2116 0.9350 21 1 1.4849 -8.0000 1.8545 22 6 4.5467 -4.3209 2.0658 23 6 3.7403 -3.8103 3.2617 24 6 4.6539 -3.5028 4.3741 25 7 5.3586 -3.2682 5.2319 26 6 3.4787 -1.1973 -0.0005 27 7 2.1463 -1.1461 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6322 2.1436 -0.0004 32 1 4.0942 2.1675 -0.0001 33 1 6.2127 0.8564 -0.0009 34 1 7.3494 -1.2956 0.0105 35 1 6.0764 -3.3941 0.0007 36 1 2.8261 -6.3154 1.9007 37 1 2.0134 -5.8276 0.3941 38 1 3.8852 -9.9441 -0.8958 39 1 5.0878 -5.2231 2.3510 40 1 5.2563 -3.5552 1.7525 41 1 3.1992 -2.9081 2.9764 42 1 3.0306 -4.5760 3.5749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131900879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:29 Heat of formation + Delta-G solvation = 30.679629 kcal Electronic energy + Delta-G solvation = -26741.398309 eV Core-core repulsion = 23071.810003 eV Total energy + Delta-G solvation = -3669.588305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04760 -40.53308 -38.12200 -38.06589 -36.75558 -34.90056 -34.35027 -32.92810 -32.39734 -31.48537 -29.60144 -28.76810 -25.60380 -25.22744 -24.70561 -23.42004 -23.05873 -20.27374 -19.35760 -19.05959 -18.54994 -18.21554 -17.60355 -17.25374 -16.84024 -16.24437 -15.84848 -15.67420 -15.62432 -15.41746 -15.10869 -14.79190 -14.59745 -14.25598 -14.16531 -13.88914 -13.82648 -13.74301 -13.59221 -13.41055 -13.11871 -13.08609 -12.94696 -12.71009 -12.43787 -12.32718 -12.26488 -12.00599 -11.90539 -11.70095 -11.46162 -10.87287 -10.78108 -10.24252 -9.63880 -9.52797 -9.16060 -8.29417 -6.33968 -0.70631 -0.15414 0.87889 1.36845 1.41567 1.48694 1.59267 1.75639 1.81485 2.04454 2.20281 2.35348 2.99613 3.07469 3.09115 3.25174 3.54850 3.75489 3.85557 3.94226 4.00255 4.01259 4.04305 4.21184 4.36752 4.43905 4.48642 4.63068 4.69824 4.74404 4.80566 4.82784 4.94318 4.97486 5.01775 5.06542 5.12216 5.21585 5.29675 5.39964 5.49843 5.58481 5.64521 5.88558 6.27955 6.50204 6.59249 6.67952 7.09790 7.24515 7.39297 8.87173 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.004355 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.689730 B = 6427.322848 C = 7129.453295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.147 3.853 3 C -0.174 4.174 4 C -0.044 4.044 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.132 4.132 10 C 0.564 3.436 11 O -0.571 6.571 12 N -0.590 5.590 13 C 0.224 3.776 14 C -0.534 4.534 15 H 0.033 0.967 16 C 0.014 3.986 17 N -0.945 5.945 18 Si 0.941 3.059 19 H -0.280 1.280 20 H -0.279 1.279 21 H -0.231 1.231 22 C 0.107 3.893 23 C -0.035 4.035 24 C 0.244 3.756 25 N -0.477 5.477 26 C 0.141 3.859 27 N -0.516 5.516 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.176 0.824 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 25.610 5.900 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.005 4.005 3 C -0.193 4.193 4 C -0.069 4.069 5 C -0.132 4.132 6 C -0.077 4.077 7 C -0.144 4.144 8 C -0.086 4.086 9 C -0.136 4.136 10 C 0.353 3.647 11 O -0.450 6.450 12 N -0.320 5.320 13 C 0.102 3.898 14 C -0.573 4.573 15 H 0.052 0.948 16 C -0.184 4.184 17 N -0.586 5.586 18 Si 0.764 3.236 19 H -0.206 1.206 20 H -0.204 1.204 21 H -0.153 1.153 22 C -0.017 4.017 23 C -0.076 4.076 24 C -0.073 4.073 25 N -0.155 5.155 26 C 0.019 3.981 27 N -0.226 5.226 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.202 0.798 33 H 0.195 0.805 34 H 0.185 0.815 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.782 24.785 6.689 25.683 hybrid contribution -0.416 -0.803 -0.720 1.156 sum -1.199 23.982 5.968 24.743 Atomic orbital electron populations 1.20880 0.87349 1.04030 1.04099 1.22186 0.98555 0.88447 0.91308 1.22104 0.95566 0.99425 1.02240 1.21971 0.94616 0.97476 0.92827 1.19119 0.95926 0.93704 1.04416 1.21598 0.91740 0.99995 0.94398 1.21169 1.02054 0.90819 1.00404 1.21579 0.91368 1.00852 0.94789 1.19770 0.94421 0.91515 1.07919 1.18438 0.81803 0.83430 0.81079 1.90723 1.35783 1.79524 1.38947 1.47721 1.46171 1.14330 1.23791 1.19423 0.92850 0.79801 0.97711 1.21563 1.05608 0.95549 1.34546 0.94820 1.25779 1.00977 0.96617 0.95053 1.70047 1.40053 1.06128 1.42337 0.85816 0.79156 0.78125 0.80525 1.20561 1.20404 1.15328 1.21696 0.91933 1.03039 0.85067 1.19706 0.95135 1.05111 0.87696 1.28911 0.93133 0.91748 0.93515 1.81165 1.10992 1.10881 1.12437 1.18677 0.89473 0.92120 0.97818 1.67872 1.09109 1.30850 1.14755 0.88912 0.87422 0.92608 0.80652 0.79793 0.80542 0.81533 0.84784 0.92097 0.96051 0.92405 0.88953 0.88211 0.86742 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.15 71.24 0.72 -1.18 16 2 C 0.15 3.48 6.78 42.89 0.29 3.77 16 3 C -0.17 -2.67 9.64 22.13 0.21 -2.46 16 4 C -0.04 -0.63 9.89 22.52 0.22 -0.40 16 5 C -0.13 -2.77 5.74 -21.29 -0.12 -2.90 16 6 C -0.06 -0.92 9.75 22.37 0.22 -0.70 16 7 C -0.13 -2.28 9.93 21.98 0.22 -2.06 16 8 C -0.07 -1.75 7.44 22.54 0.17 -1.59 16 9 C -0.13 -4.51 4.93 -19.86 -0.10 -4.61 16 10 C 0.56 24.43 6.79 86.67 0.59 25.02 16 11 O -0.57 -30.71 16.36 -4.06 -0.07 -30.77 16 12 N -0.59 -23.56 2.46 -830.01 -2.04 -25.60 16 13 C 0.22 10.51 4.29 85.63 0.37 10.88 16 14 C -0.53 -30.56 9.94 25.60 0.25 -30.30 16 15 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 16 C 0.01 0.80 5.47 84.65 0.46 1.26 16 17 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 18 Si 0.94 43.70 27.47 68.60 1.88 45.59 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.23 -9.36 6.54 99.48 0.65 -8.71 16 22 C 0.11 3.11 5.18 86.38 0.45 3.56 16 23 C -0.04 -0.81 6.02 28.79 0.17 -0.63 16 24 C 0.24 6.01 15.43 89.46 1.38 7.39 16 25 N -0.48 -13.90 18.53 19.99 0.37 -13.53 16 26 C 0.14 4.41 6.60 40.62 0.27 4.68 16 27 N -0.52 -17.15 9.48 -176.11 -1.67 -18.82 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.15 8.07 -2.39 -0.02 1.13 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 33 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.13 3.62 7.55 -2.91 -0.02 3.60 16 36 H 0.06 2.51 7.13 -2.39 -0.02 2.50 16 37 H 0.02 1.10 6.78 -2.39 -0.02 1.08 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.09 2.74 8.11 -2.39 -0.02 2.72 16 40 H 0.10 2.59 4.42 -2.39 -0.01 2.57 16 41 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -87.65 366.22 5.55 -82.10 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.99 Total: 10.23 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.78 Total: 9.74 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -3.04 Total: -116.87 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.07 Total: -30.77 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Total: -87.65 5.55 -82.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131900879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.777 kcal (2) G-P(sol) polarization free energy of solvation -87.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds