Wall clock time and date at job start Tue Mar 31 2020 14:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00209 * 2 1 4 4 H 1.48507 * 109.47055 * 270.00035 * 3 2 1 5 5 H 1.48500 * 109.47089 * 29.99722 * 3 2 1 6 6 H 1.48500 * 109.47555 * 150.00030 * 3 2 1 7 7 C 1.37884 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99340 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47288 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47274 * 179.97438 * 11 10 9 13 13 C 1.46852 * 110.99880 * 65.78771 * 12 11 10 14 14 C 1.53037 * 109.52081 * 185.83833 * 13 12 11 15 15 C 1.53113 * 109.27844 * 300.81968 * 14 13 12 16 16 C 1.53103 * 109.15468 * 57.65717 * 15 14 13 17 17 H 1.08997 * 109.50181 * 62.28694 * 16 15 14 18 18 O 1.42899 * 109.48970 * 182.39435 * 16 15 14 19 19 C 1.35926 * 117.00528 * 275.01731 * 18 16 15 20 20 C 1.38714 * 120.05407 * 5.40485 * 19 18 16 21 21 C 1.38157 * 119.95227 * 179.70177 * 20 19 18 22 22 C 1.38274 * 120.07658 * 0.58059 * 21 20 19 23 23 C 1.38253 * 120.12006 * 359.71927 * 22 21 20 24 24 C 1.38248 * 120.04139 * 359.97438 * 23 22 21 25 25 Cl 1.73604 * 120.03935 * 180.02562 * 24 23 22 26 26 C 1.46844 * 111.00007 * 189.99747 * 12 11 10 27 27 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47227 * 59.99924 * 9 7 2 29 29 H 1.09000 * 109.47578 * 299.99840 * 9 7 2 30 30 H 1.09003 * 109.47184 * 59.99862 * 10 9 7 31 31 H 1.09000 * 109.47211 * 300.00028 * 10 9 7 32 32 H 1.09003 * 109.47282 * 59.99724 * 11 10 9 33 33 H 1.09000 * 109.46855 * 300.00047 * 11 10 9 34 34 H 1.08999 * 109.46209 * 305.85529 * 13 12 11 35 35 H 1.09006 * 109.46246 * 65.82269 * 13 12 11 36 36 H 1.09000 * 109.50217 * 60.76610 * 14 13 12 37 37 H 1.09007 * 109.50005 * 180.88018 * 14 13 12 38 38 H 1.09002 * 109.52089 * 177.55689 * 15 14 13 39 39 H 1.09001 * 109.52988 * 297.68771 * 15 14 13 40 40 H 1.07997 * 120.02480 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.95922 * 180.29861 * 21 20 19 42 42 H 1.08007 * 119.94296 * 179.74157 * 22 21 20 43 43 H 1.08000 * 119.97649 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.46567 * 294.17617 * 26 12 11 45 45 H 1.08997 * 109.46098 * 54.15655 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9872 0.0012 12 7 2.4348 -6.1037 0.0018 13 6 3.2032 -6.1384 1.2527 14 6 4.2831 -7.2188 1.1597 15 6 3.6202 -8.5759 0.9083 16 6 2.7874 -8.4983 -0.3741 17 1 3.4411 -8.2863 -1.2201 18 8 2.1208 -9.7444 -0.5858 19 6 2.8208 -10.7179 -1.2259 20 6 4.1568 -10.5195 -1.5418 21 6 4.8680 -11.5128 -2.1870 22 6 4.2463 -12.6997 -2.5288 23 6 2.9132 -12.8983 -2.2209 24 6 2.1986 -11.9102 -1.5698 25 17 0.5248 -12.1599 -1.1827 26 6 1.7508 -7.3810 -0.2368 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 2.8712 -3.6040 0.8923 31 1 2.8726 -3.6048 -0.8877 32 1 0.8545 -5.0451 -0.8895 33 1 0.8526 -5.0447 0.8905 34 1 3.6728 -5.1687 1.4175 35 1 2.5346 -6.3638 2.0836 36 1 4.9603 -6.9866 0.3377 37 1 4.8432 -7.2549 2.0942 38 1 4.3882 -9.3415 0.7982 39 1 2.9735 -8.8268 1.7491 40 1 4.6422 -9.5912 -1.2789 41 1 5.9095 -11.3603 -2.4286 42 1 4.8033 -13.4732 -3.0368 43 1 2.4301 -13.8264 -2.4886 44 1 1.0889 -7.6007 0.6010 45 1 1.1656 -7.3138 -1.1539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133231373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:39 Heat of formation + Delta-G solvation = -48.209948 kcal Electronic energy + Delta-G solvation = -24457.370604 eV Core-core repulsion = 20885.468883 eV Total energy + Delta-G solvation = -3571.901720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57721 -39.91144 -38.32609 -37.32355 -36.12940 -34.57159 -32.63801 -31.92144 -31.61980 -30.23001 -28.47036 -25.78297 -24.88151 -23.77854 -23.40518 -22.92441 -21.50479 -20.87173 -19.38810 -18.50093 -17.59070 -17.08072 -16.79081 -16.49116 -16.35586 -16.18067 -15.80667 -15.50068 -15.06369 -14.98064 -14.66409 -14.51403 -14.34324 -14.13892 -13.63834 -13.60301 -13.21384 -13.09700 -12.84258 -12.66749 -12.61173 -12.46348 -12.38855 -12.25622 -12.01021 -11.95733 -11.69974 -11.67394 -11.46801 -11.35206 -11.23355 -11.05519 -10.54541 -9.87979 -9.39076 -9.18978 -8.19782 -6.30722 0.15488 0.33353 1.21139 1.40408 1.41931 1.52984 1.89670 2.41393 2.65788 3.01859 3.13473 3.58142 3.66926 3.76949 3.90324 3.96967 4.04333 4.09869 4.22371 4.26720 4.35160 4.39293 4.46243 4.47705 4.59305 4.66197 4.70034 4.77839 4.80037 4.86980 4.94238 5.00472 5.05215 5.09546 5.13878 5.26804 5.28551 5.32827 5.46764 5.52420 5.70951 5.74283 5.86138 5.98942 6.07553 6.26658 6.31589 6.86359 7.38479 8.92225 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.002135 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.174458 B =13109.039047 C =13588.002916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.025 3.975 10 C -0.087 4.087 11 C 0.069 3.931 12 N -0.534 5.534 13 C 0.042 3.958 14 C -0.104 4.104 15 C -0.137 4.137 16 C 0.096 3.904 17 H 0.089 0.911 18 O -0.316 6.316 19 C 0.123 3.877 20 C -0.205 4.205 21 C -0.073 4.073 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.094 4.094 25 Cl -0.075 7.075 26 C 0.063 3.937 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.036 0.964 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.634 -28.993 -2.557 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.059 4.059 12 N -0.259 5.259 13 C -0.085 4.085 14 C -0.142 4.142 15 C -0.175 4.175 16 C 0.040 3.960 17 H 0.107 0.893 18 O -0.229 6.229 19 C 0.077 3.923 20 C -0.224 4.224 21 C -0.091 4.091 22 C -0.163 4.163 23 C -0.097 4.097 24 C -0.121 4.121 25 Cl -0.046 7.046 26 C -0.066 4.066 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.180 0.820 43 H 0.172 0.828 44 H 0.054 0.946 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.460 -28.841 -2.815 31.161 hybrid contribution -1.044 1.125 0.758 1.712 sum 10.416 -27.716 -2.057 29.680 Atomic orbital electron populations 1.70101 1.07848 1.27745 1.51810 1.26014 0.95787 1.03468 0.94799 0.85434 0.78683 0.78342 0.78516 1.19758 1.20826 1.18595 1.21684 0.93568 0.92265 1.50311 0.92078 1.18980 0.94453 0.93199 0.94678 1.21384 0.97913 0.92178 1.00964 1.22019 0.93477 0.90230 1.00136 1.61842 1.26198 1.01905 1.36002 1.22322 0.96047 1.00827 0.89351 1.21515 0.97011 0.91920 1.03735 1.22117 0.99612 0.98937 0.96840 1.22379 0.93909 0.80492 0.99260 0.89292 1.86109 1.42375 1.22275 1.72189 1.18962 0.91394 0.88321 0.93668 1.21559 0.92477 1.02799 1.05562 1.21472 1.01230 0.92112 0.94271 1.21431 0.93791 0.99003 1.02047 1.21229 0.94815 0.97844 0.95793 1.20528 0.86886 0.95951 1.08758 1.98360 1.16275 1.96618 1.93351 1.21889 0.94955 0.88149 1.01570 0.92813 0.99091 0.99253 0.92737 0.92663 0.91396 0.95663 0.90266 0.95161 0.90275 0.88893 0.89618 0.91691 0.83445 0.82354 0.82014 0.82815 0.94582 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.58 5.08 30.60 0.16 -3.43 16 11 C 0.07 2.41 4.96 86.30 0.43 2.84 16 12 N -0.53 -15.32 4.66 -896.36 -4.17 -19.49 16 13 C 0.04 1.06 5.29 86.32 0.46 1.51 16 14 C -0.10 -1.89 6.09 30.64 0.19 -1.71 16 15 C -0.14 -2.50 5.28 30.67 0.16 -2.33 16 16 C 0.10 2.06 2.27 30.64 0.07 2.13 16 17 H 0.09 1.82 6.32 -2.39 -0.02 1.81 16 18 O -0.32 -7.57 9.26 -92.71 -0.86 -8.43 16 19 C 0.12 2.58 6.60 22.52 0.15 2.72 16 20 C -0.21 -3.28 8.27 22.36 0.19 -3.10 16 21 C -0.07 -0.83 10.04 22.26 0.22 -0.61 16 22 C -0.14 -1.54 10.04 22.28 0.22 -1.32 16 23 C -0.08 -1.12 9.83 22.28 0.22 -0.90 16 24 C -0.09 -1.89 6.33 22.41 0.14 -1.75 16 25 Cl -0.07 -1.63 28.50 -2.72 -0.08 -1.71 16 26 C 0.06 1.63 5.11 86.32 0.44 2.07 16 27 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.05 2.17 6.43 -2.39 -0.02 2.16 16 31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.41 7.99 -2.39 -0.02 2.39 16 33 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 34 H 0.08 2.14 6.21 -2.39 -0.01 2.13 16 35 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 1.29 6.89 -2.39 -0.02 1.28 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.15 2.05 5.40 -2.91 -0.02 2.04 16 41 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 2.07 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -67.19 372.06 2.05 -65.14 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.97 Total: 8.18 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.89 Total: -32.93 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.89 Total: -76.80 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.86 Total: -8.43 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -67.19 2.05 -65.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133231373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.930 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds