Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47201 * 269.99897 * 3 2 1 5 5 H 1.48498 * 109.47202 * 29.99787 * 3 2 1 6 6 H 1.48495 * 109.47136 * 150.00047 * 3 2 1 7 7 C 1.37879 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46674 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46962 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.46976 * 179.97438 * 11 10 9 13 13 C 1.46855 * 111.00146 * 294.20828 * 12 11 10 14 14 C 1.53037 * 109.52043 * 174.16214 * 13 12 11 15 15 C 1.53118 * 109.27823 * 59.18288 * 14 13 12 16 16 C 1.53119 * 109.16391 * 302.34187 * 15 14 13 17 17 H 1.09005 * 109.53274 * 297.69571 * 16 15 14 18 18 O 1.42894 * 109.50649 * 177.59508 * 16 15 14 19 19 C 1.35927 * 116.99948 * 84.98650 * 18 16 15 20 20 C 1.38710 * 120.05992 * 354.59156 * 19 18 16 21 21 C 1.38148 * 119.96017 * 179.97438 * 20 19 18 22 22 C 1.38282 * 120.07432 * 359.97333 * 21 20 19 23 23 C 1.38249 * 120.12114 * 359.79635 * 22 21 20 24 24 C 1.38260 * 120.04066 * 0.45678 * 23 22 21 25 25 Cl 1.73601 * 120.03978 * 179.79215 * 24 23 22 26 26 C 1.46853 * 110.99736 * 170.00288 * 12 11 10 27 27 H 0.96994 * 120.00340 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47173 * 59.99946 * 9 7 2 29 29 H 1.09002 * 109.46792 * 300.00132 * 9 7 2 30 30 H 1.09000 * 109.47488 * 59.99988 * 10 9 7 31 31 H 1.09002 * 109.47496 * 299.99550 * 10 9 7 32 32 H 1.09000 * 109.46849 * 59.99817 * 11 10 9 33 33 H 1.08994 * 109.47089 * 300.00114 * 11 10 9 34 34 H 1.08997 * 109.46135 * 294.17892 * 13 12 11 35 35 H 1.08994 * 109.45771 * 54.14656 * 13 12 11 36 36 H 1.09006 * 109.49963 * 179.12024 * 14 13 12 37 37 H 1.08993 * 109.50588 * 299.24380 * 14 13 12 38 38 H 1.08999 * 109.52447 * 182.43355 * 15 14 13 39 39 H 1.09006 * 109.52331 * 62.24892 * 15 14 13 40 40 H 1.07997 * 120.01786 * 359.95072 * 20 19 18 41 41 H 1.07999 * 119.96562 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.94049 * 180.02562 * 22 21 20 43 43 H 1.07992 * 119.98250 * 180.23151 * 23 22 21 44 44 H 1.09000 * 109.46611 * 65.82535 * 26 12 11 45 45 H 1.09003 * 109.45238 * 305.84754 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 7 2.4352 -6.1035 -0.0005 13 6 3.2036 -6.1383 -1.2515 14 6 4.2836 -7.2185 -1.1584 15 6 3.6207 -8.5757 -0.9069 16 6 2.7878 -8.4983 0.3756 17 1 3.4410 -8.2866 1.2221 18 8 2.1209 -9.7443 0.5873 19 6 2.8209 -10.7178 1.2275 20 6 4.1570 -10.5196 1.5434 21 6 4.8663 -11.5102 2.1946 22 6 4.2457 -12.6989 2.5323 23 6 2.9130 -12.8980 2.2233 24 6 2.1998 -11.9120 1.5670 25 17 0.5278 -12.1642 1.1742 26 6 1.7511 -7.3809 0.2381 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8721 -3.6042 0.8894 31 1 2.8721 -3.6043 -0.8906 32 1 0.8535 -5.0451 -0.8896 33 1 0.8542 -5.0446 0.8903 34 1 2.5349 -6.3637 -2.0822 35 1 3.6731 -5.1685 -1.4162 36 1 4.8436 -7.2547 -2.0929 37 1 4.9606 -6.9864 -0.3364 38 1 4.3886 -9.3414 -0.7969 39 1 2.9732 -8.8262 -1.7473 40 1 4.6425 -9.5915 1.2800 41 1 5.9066 -11.3561 2.4402 42 1 4.8022 -13.4717 3.0418 43 1 2.4296 -13.8257 2.4915 44 1 1.0894 -7.6006 -0.5997 45 1 1.1659 -7.3136 1.1552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133231547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = -31.990384 kcal Electronic energy + Delta-G solvation = -24456.357754 eV Core-core repulsion = 20885.159366 eV Total energy + Delta-G solvation = -3571.198387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.79411 -38.99061 -37.44447 -36.58045 -34.51740 -32.90977 -31.21391 -31.18721 -30.65979 -29.41186 -26.74542 -24.38818 -23.94868 -22.82606 -22.46956 -21.75136 -19.98015 -19.85771 -18.62741 -16.91151 -16.42603 -16.21943 -15.77725 -15.33479 -15.17298 -15.03228 -14.55563 -14.34954 -14.30316 -13.82642 -13.65448 -13.49842 -13.37594 -12.69427 -12.41365 -12.27182 -12.15854 -11.88717 -11.73101 -11.68996 -11.33689 -11.18775 -11.06961 -10.92898 -10.86684 -10.74356 -10.61123 -10.44857 -10.38021 -9.60921 -9.34653 -9.24072 -9.06241 -8.49193 -8.33934 -8.18024 -5.99087 -4.01234 0.78063 0.97285 1.93924 2.72710 3.27341 3.32309 3.38585 3.42103 4.11424 4.39973 4.42013 4.47063 4.55020 4.59076 4.74687 4.80717 4.88487 5.00707 5.06420 5.20555 5.34947 5.36702 5.39153 5.51706 5.56464 5.59993 5.66994 5.74914 5.79037 5.82208 5.85452 5.98508 6.04450 6.04754 6.17422 6.28027 6.28909 6.67649 6.72716 7.01979 7.10657 7.28339 7.31252 7.68812 7.83404 8.01185 8.44147 9.05954 9.62715 11.12349 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.002135 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.598282 B =13111.673278 C =13588.839369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.059 3.941 12 N -0.534 5.534 13 C 0.047 3.953 14 C -0.113 4.113 15 C -0.145 4.145 16 C 0.089 3.911 17 H 0.085 0.915 18 O -0.298 6.298 19 C 0.149 3.851 20 C -0.200 4.200 21 C -0.075 4.075 22 C -0.151 4.151 23 C -0.075 4.075 24 C -0.074 4.074 25 Cl -0.059 7.059 26 C 0.062 3.938 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.016 0.984 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.043 0.957 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.753 -27.866 2.157 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.068 4.068 12 N -0.260 5.260 13 C -0.081 4.081 14 C -0.151 4.151 15 C -0.183 4.183 16 C 0.033 3.967 17 H 0.103 0.897 18 O -0.211 6.211 19 C 0.101 3.899 20 C -0.218 4.218 21 C -0.093 4.093 22 C -0.170 4.170 23 C -0.093 4.093 24 C -0.101 4.101 25 Cl -0.030 7.030 26 C -0.066 4.066 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.159 0.841 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.061 0.939 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.562 -27.688 2.424 29.083 hybrid contribution -0.152 0.862 -0.689 1.114 sum 8.410 -26.826 1.735 28.167 Atomic orbital electron populations 1.69962 1.06055 1.26568 1.50975 1.25034 0.94849 0.99266 0.95406 0.86599 0.79868 0.83507 0.78058 1.20715 1.21244 1.19864 1.21239 0.93024 0.91013 1.50373 0.92681 1.19077 0.94037 0.91374 0.97141 1.21666 0.99172 0.92524 1.00824 1.22301 0.93521 0.90429 1.00558 1.61903 1.27040 1.02110 1.34971 1.22221 0.95529 1.00101 0.90256 1.21549 0.97990 0.93115 1.02421 1.22179 0.99567 0.98624 0.97894 1.22516 0.94730 0.81118 0.98380 0.89738 1.86154 1.41503 1.21944 1.71473 1.18709 0.90435 0.88287 0.92426 1.21382 0.93166 1.01976 1.05309 1.21081 1.00014 0.92657 0.95524 1.21022 0.94309 0.98428 1.03236 1.20923 0.94182 0.97793 0.96423 1.20244 0.87378 0.95094 1.07401 1.98374 1.15100 1.96529 1.92981 1.21914 0.94372 0.88139 1.02202 0.93030 0.96805 0.96572 0.92523 0.93375 0.95040 0.90968 0.94843 0.89279 0.90903 0.90835 0.91331 0.90982 0.84142 0.85140 0.85057 0.84481 0.93902 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.12 5.08 -26.73 -0.14 -2.25 16 11 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 12 N -0.53 -7.70 4.66 -234.66 -1.09 -8.79 16 13 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16 14 C -0.11 -1.14 6.09 -26.65 -0.16 -1.30 16 15 C -0.14 -1.43 5.28 -26.61 -0.14 -1.58 16 16 C 0.09 0.99 2.27 -26.65 -0.06 0.93 16 17 H 0.08 0.92 6.32 -51.93 -0.33 0.59 16 18 O -0.30 -3.59 9.26 -19.51 -0.18 -3.77 16 19 C 0.15 1.62 6.60 -39.19 -0.26 1.36 16 20 C -0.20 -1.80 8.27 -39.44 -0.33 -2.13 16 21 C -0.07 -0.55 10.04 -39.60 -0.40 -0.94 16 22 C -0.15 -1.05 10.04 -39.56 -0.40 -1.45 16 23 C -0.07 -0.60 9.83 -39.57 -0.39 -0.99 16 24 C -0.07 -0.77 6.33 -39.36 -0.25 -1.02 16 25 Cl -0.06 -0.63 28.50 -51.86 -1.48 -2.11 16 26 C 0.06 0.80 5.11 -3.83 -0.02 0.78 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 32 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 33 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.24 6.21 -51.93 -0.32 0.91 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.14 1.14 5.40 -52.49 -0.28 0.86 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -30.61 372.06 -11.63 -42.24 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.07 Total: -3.40 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -3.13 Total: -20.13 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.36 Total: -35.13 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.61 -11.63 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133231547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.245 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds