Wall clock time and date at job start Tue Mar 31 2020 14:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38360 * 119.91956 * 2 1 4 4 C 1.38452 * 120.27678 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.93973 * 180.02562 * 4 3 2 6 6 C 1.38100 * 120.11970 * 0.04771 * 4 3 2 7 7 C 1.39545 * 119.83821 * 359.97212 * 6 4 3 8 8 C 1.47848 * 120.13797 * 179.97438 * 7 6 4 9 9 O 1.21549 * 119.99920 * 131.77560 * 8 7 6 10 10 N 1.34779 * 120.00045 * 311.77921 * 8 7 6 11 11 C 1.46500 * 119.99945 * 4.96688 * 10 8 7 12 12 C 1.50703 * 109.46968 * 95.76871 * 11 10 8 13 13 H 1.08003 * 119.99885 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99875 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99864 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00351 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47312 * 89.99700 * 16 14 12 18 18 H 1.48498 * 109.47482 * 209.99814 * 16 14 12 19 19 H 1.48502 * 109.46979 * 329.99829 * 16 14 12 20 20 C 1.46496 * 119.99954 * 184.97119 * 10 8 7 21 21 C 1.53002 * 109.47079 * 89.99845 * 20 10 8 22 22 C 1.53000 * 109.47003 * 179.97438 * 21 20 10 23 23 C 1.53002 * 109.47356 * 65.00002 * 22 21 20 24 24 C 1.53003 * 109.47133 * 184.99876 * 22 21 20 25 25 C 1.37941 * 119.91633 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46735 * 269.97691 * 1 2 3 27 27 H 1.08995 * 109.46959 * 29.97279 * 1 2 3 28 28 H 1.08993 * 109.47253 * 149.97581 * 1 2 3 29 29 H 1.07995 * 119.86117 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.08158 * 180.25708 * 6 4 3 31 31 H 1.08993 * 109.47255 * 215.76772 * 11 10 8 32 32 H 1.09007 * 109.47248 * 335.77284 * 11 10 8 33 33 H 0.96996 * 120.00081 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.47267 * 209.99700 * 20 10 8 35 35 H 1.09001 * 109.47404 * 330.00019 * 20 10 8 36 36 H 1.08994 * 109.47205 * 299.99789 * 21 20 10 37 37 H 1.09002 * 109.46957 * 60.00387 * 21 20 10 38 38 H 1.09001 * 109.47198 * 304.99852 * 22 21 20 39 39 H 1.08997 * 109.46678 * 59.99571 * 23 22 21 40 40 H 1.08998 * 109.47199 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.46581 * 300.00004 * 23 22 21 42 42 H 1.09005 * 109.46694 * 60.00150 * 24 22 21 43 43 H 1.08998 * 109.46993 * 179.97438 * 24 22 21 44 44 H 1.08989 * 109.47366 * 300.00296 * 24 22 21 45 45 H 1.07999 * 120.06591 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5817 1.2078 0.0005 5 17 4.4387 2.7175 0.0012 6 6 4.2821 0.0176 0.0001 7 6 3.5910 -1.1947 -0.0003 8 6 4.3342 -2.4728 -0.0014 9 8 4.0338 -3.3511 0.7832 10 7 5.3449 -2.6639 -0.8724 11 6 5.7786 -1.5685 -1.7430 12 6 6.9529 -0.8627 -1.1153 13 1 7.3373 -1.1965 -0.1629 14 6 7.5363 0.2092 -1.7570 15 7 8.5608 0.8254 -1.2089 16 14 6.8709 0.7870 -3.4040 17 1 5.8191 1.8113 -3.1811 18 1 7.9741 1.3764 -4.2044 19 1 6.2904 -0.3675 -4.1358 20 6 6.0097 -3.9672 -0.9484 21 6 5.2958 -4.8445 -1.9788 22 6 5.9905 -6.2053 -2.0587 23 6 5.8325 -6.9377 -0.7246 24 6 5.3561 -7.0370 -3.1753 25 6 2.1950 -1.1956 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6536 2.1324 -0.0004 30 1 5.3620 0.0251 0.0047 31 1 6.0720 -1.9697 -2.7130 32 1 4.9585 -0.8625 -1.8748 33 1 8.9716 1.5792 -1.6605 34 1 7.0487 -3.8282 -1.2471 35 1 5.9738 -4.4509 0.0277 36 1 4.2568 -4.9835 -1.6801 37 1 5.3317 -4.3608 -2.9550 38 1 7.0499 -6.0606 -2.2705 39 1 4.7732 -7.0823 -0.5129 40 1 6.3278 -7.9070 -0.7814 41 1 6.2845 -6.3451 0.0708 42 1 5.4687 -6.5152 -4.1257 43 1 5.8513 -8.0063 -3.2325 44 1 4.2968 -7.1817 -2.9635 45 1 1.6547 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152416383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:48 Heat of formation + Delta-G solvation = -52.504873 kcal Electronic energy + Delta-G solvation = -25759.546606 eV Core-core repulsion = 22187.458644 eV Total energy + Delta-G solvation = -3572.087962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50806 -39.72922 -37.88433 -37.40915 -36.58916 -34.55057 -33.81132 -32.06773 -30.87848 -29.30343 -28.01068 -27.83316 -25.60324 -24.63814 -23.39044 -22.76835 -20.91500 -20.16105 -19.10312 -18.18465 -17.75391 -17.16699 -16.69432 -16.32894 -16.10619 -15.98415 -15.57885 -14.93701 -14.83810 -14.64691 -14.50270 -14.43394 -14.27112 -13.84473 -13.68952 -13.40626 -13.24227 -13.14187 -12.93300 -12.77236 -12.59951 -12.57497 -12.41209 -12.28889 -12.19289 -12.04759 -11.91362 -11.81332 -11.64173 -11.54988 -11.43783 -10.89716 -10.79724 -9.88965 -9.61669 -9.49667 -8.33023 -6.38565 -0.13319 0.18258 1.12674 1.34233 1.37617 1.42956 1.66455 2.13759 2.30217 2.59564 3.00487 3.45290 3.80195 3.93166 3.94479 4.06145 4.07304 4.15194 4.28469 4.32530 4.38482 4.52842 4.61603 4.66955 4.72928 4.77617 4.82418 4.83899 4.85680 4.89944 4.94496 5.02624 5.11472 5.12571 5.18740 5.21115 5.31360 5.36536 5.40696 5.43052 5.46810 5.50025 5.65202 5.77376 6.12103 6.50577 6.64779 7.10711 7.26934 8.81883 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.005439 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.314720 B = 5146.411906 C = 7114.655520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.079 4.079 3 C -0.089 4.089 4 C -0.052 4.052 5 Cl -0.075 7.075 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.557 3.443 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.213 3.787 12 C -0.537 4.537 13 H 0.036 0.964 14 C 0.044 3.956 15 N -0.926 5.926 16 Si 0.909 3.091 17 H -0.258 1.258 18 H -0.282 1.282 19 H -0.242 1.242 20 C 0.114 3.886 21 C -0.116 4.116 22 C -0.092 4.092 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.074 4.074 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.601 -5.148 -3.491 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.107 4.107 4 C -0.079 4.079 5 Cl -0.046 7.046 6 C -0.118 4.118 7 C -0.131 4.131 8 C 0.346 3.654 9 O -0.464 6.464 10 N -0.314 5.314 11 C 0.092 3.908 12 C -0.575 4.575 13 H 0.054 0.946 14 C -0.158 4.158 15 N -0.564 5.564 16 Si 0.732 3.268 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.165 1.165 20 C -0.008 4.008 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.203 4.203 24 C -0.197 4.197 25 C -0.092 4.092 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.181 0.819 30 H 0.165 0.835 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.512 -5.333 -3.139 15.776 hybrid contribution 0.961 0.845 -0.348 1.326 sum -13.551 -4.488 -3.487 14.695 Atomic orbital electron populations 1.20854 0.86865 1.04564 1.03932 1.20120 0.98456 0.90682 0.98700 1.21396 0.90633 1.00232 0.98490 1.20958 0.93314 0.86709 1.06872 1.98364 1.77972 1.31268 1.97019 1.22093 1.03136 0.90551 0.96052 1.19834 0.95100 0.92198 1.05995 1.18534 0.80144 0.86778 0.79977 1.90665 1.69328 1.45885 1.40511 1.47926 1.32421 1.13406 1.37610 1.19791 0.94917 0.85754 0.90373 1.21273 1.14790 1.14855 1.06622 0.94594 1.25459 0.94258 0.95676 1.00374 1.70007 1.23564 1.22278 1.40550 0.86260 0.79260 0.80534 0.80727 1.18249 1.20719 1.16540 1.21574 0.96541 0.82237 1.00439 1.21902 0.99401 0.95613 0.98547 1.21058 1.00154 0.93488 0.96418 1.21859 1.01646 1.00365 0.96427 1.21781 1.00711 0.99826 0.97427 1.21301 0.91146 0.99707 0.97080 0.89485 0.89378 0.90076 0.81945 0.83523 0.94056 0.93956 0.92187 0.90713 0.91144 0.92714 0.91804 0.90821 0.93099 0.91208 0.93773 0.92525 0.91346 0.92749 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 2 C -0.08 -1.94 5.87 -19.90 -0.12 -2.06 16 3 C -0.09 -2.38 9.47 22.35 0.21 -2.17 16 4 C -0.05 -1.82 6.31 22.29 0.14 -1.68 16 5 Cl -0.08 -2.68 28.95 -2.72 -0.08 -2.76 16 6 C -0.10 -4.07 7.29 22.55 0.16 -3.90 16 7 C -0.13 -4.94 4.95 -20.09 -0.10 -5.04 16 8 C 0.56 23.77 7.24 86.79 0.63 24.40 16 9 O -0.58 -26.59 16.57 -3.87 -0.06 -26.66 16 10 N -0.59 -24.59 2.46 -829.57 -2.04 -26.63 16 11 C 0.21 9.50 3.73 85.63 0.32 9.82 16 12 C -0.54 -28.41 7.40 25.60 0.19 -28.22 16 13 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 14 C 0.04 2.34 5.47 84.65 0.46 2.81 16 15 N -0.93 -54.01 13.96 21.45 0.30 -53.71 16 16 Si 0.91 40.32 27.47 68.60 1.88 42.20 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.24 -9.82 6.54 99.48 0.65 -9.16 16 20 C 0.11 4.21 5.22 86.38 0.45 4.66 16 21 C -0.12 -3.45 5.01 30.59 0.15 -3.30 16 22 C -0.09 -2.20 2.92 -10.79 -0.03 -2.23 16 23 C -0.15 -3.43 8.95 71.98 0.64 -2.78 16 24 C -0.14 -2.72 9.19 71.98 0.66 -2.06 16 25 C -0.07 -2.23 9.37 22.53 0.21 -2.02 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.15 7.16 4.76 -2.91 -0.01 7.14 16 31 H 0.04 1.77 7.17 -2.39 -0.02 1.76 16 32 H 0.04 1.87 4.83 -2.38 -0.01 1.86 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.07 2.82 8.07 -2.39 -0.02 2.80 16 35 H 0.07 2.70 5.78 -2.39 -0.01 2.68 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 1.16 6.57 -2.39 -0.02 1.15 16 42 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -64.43 377.67 5.62 -58.81 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.92 Total: 23.40 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 4.70 Total: -14.65 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.74 Total: -80.34 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.20 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.08 Total: -2.76 kcal Total: -64.43 5.62 -58.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152416383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.305 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds