Wall clock time and date at job start Tue Mar 31 2020 14:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38362 * 119.92088 * 2 1 4 4 C 1.38450 * 120.28173 * 179.97438 * 3 2 1 5 5 Cl 1.73596 * 119.94399 * 180.02562 * 4 3 2 6 6 C 1.38097 * 120.11433 * 0.04220 * 4 3 2 7 7 C 1.39546 * 119.84337 * 359.97438 * 6 4 3 8 8 C 1.47844 * 120.14133 * 179.97438 * 7 6 4 9 9 O 1.21553 * 120.00234 * 150.82040 * 8 7 6 10 10 N 1.34776 * 120.00005 * 330.82433 * 8 7 6 11 11 C 1.46504 * 120.00087 * 6.17155 * 10 8 7 12 12 C 1.50696 * 109.46932 * 98.82414 * 11 10 8 13 13 H 1.07998 * 120.00454 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99880 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99830 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00007 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46952 * 90.00133 * 16 14 12 18 18 H 1.48502 * 109.46976 * 210.00159 * 16 14 12 19 19 H 1.48497 * 109.46890 * 329.99852 * 16 14 12 20 20 C 1.46500 * 119.99971 * 186.17797 * 10 8 7 21 21 C 1.53000 * 109.47596 * 89.09045 * 20 10 8 22 22 C 1.52997 * 109.47077 * 64.46994 * 21 20 10 23 23 C 1.52997 * 109.47138 * 184.47190 * 21 20 10 24 24 C 1.53004 * 109.46923 * 304.47159 * 21 20 10 25 25 C 1.37940 * 119.92135 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46715 * 269.97969 * 1 2 3 27 27 H 1.09001 * 109.47019 * 29.97674 * 1 2 3 28 28 H 1.08997 * 109.47277 * 149.98465 * 1 2 3 29 29 H 1.08003 * 119.86063 * 359.97438 * 3 2 1 30 30 H 1.08006 * 120.08238 * 180.25129 * 6 4 3 31 31 H 1.09004 * 109.47148 * 218.82355 * 11 10 8 32 32 H 1.09003 * 109.46878 * 338.81986 * 11 10 8 33 33 H 0.96999 * 119.99612 * 180.02562 * 15 14 12 34 34 H 1.09008 * 109.46937 * 209.09247 * 20 10 8 35 35 H 1.08998 * 109.47057 * 329.08888 * 20 10 8 36 36 H 1.09005 * 109.47418 * 60.00437 * 22 21 20 37 37 H 1.08995 * 109.47305 * 180.02562 * 22 21 20 38 38 H 1.09005 * 109.47257 * 300.00648 * 22 21 20 39 39 H 1.08995 * 109.47240 * 59.99712 * 23 21 20 40 40 H 1.09008 * 109.47021 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47309 * 299.99814 * 23 21 20 42 42 H 1.09002 * 109.47111 * 65.18409 * 24 21 20 43 43 H 1.08993 * 109.46722 * 185.18034 * 24 21 20 44 44 H 1.08999 * 109.46959 * 305.18763 * 24 21 20 45 45 H 1.08002 * 120.06074 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5816 1.2079 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2820 0.0177 0.0002 7 6 3.5910 -1.1946 -0.0002 8 6 4.3342 -2.4727 -0.0011 9 8 3.8454 -3.4604 0.5118 10 7 5.5537 -2.5427 -0.5706 11 6 6.2008 -1.3260 -1.0679 12 6 7.1923 -0.8312 -0.0466 13 1 7.3267 -1.3688 0.8804 14 6 7.9273 0.3086 -0.2951 15 7 7.7633 0.9637 -1.4237 16 14 9.1558 0.9225 0.9711 17 1 10.4830 0.3094 0.7108 18 1 9.2663 2.4004 0.8777 19 1 8.6945 0.5456 2.3314 20 6 6.2321 -3.8354 -0.6925 21 6 5.8367 -4.4963 -2.0146 22 6 6.3458 -3.6475 -3.1813 23 6 6.4560 -5.8932 -2.0917 24 6 4.3128 -4.6090 -2.0927 25 6 2.1950 -1.1955 -0.0005 26 1 -0.3633 -0.0004 1.0278 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6535 2.1325 -0.0004 30 1 5.3620 0.0251 0.0047 31 1 6.7195 -1.5458 -2.0011 32 1 5.4465 -0.5590 -1.2434 33 1 8.2806 1.7654 -1.5987 34 1 7.3112 -3.6829 -0.6710 35 1 5.9395 -4.4789 0.1371 36 1 7.4315 -3.5673 -3.1257 37 1 6.0638 -4.1181 -4.1231 38 1 5.9047 -2.6523 -3.1263 39 1 6.0934 -6.4978 -1.2605 40 1 6.1740 -6.3642 -3.0334 41 1 7.5416 -5.8129 -2.0360 42 1 3.8762 -3.6110 -2.1306 43 1 4.0350 -5.1613 -2.9903 44 1 3.9418 -5.1347 -1.2129 45 1 1.6547 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152787823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:07 Heat of formation + Delta-G solvation = -13.572551 kcal Electronic energy + Delta-G solvation = -26540.070800 eV Core-core repulsion = 22969.671070 eV Total energy + Delta-G solvation = -3570.399730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14055 -38.42917 -36.59709 -35.87720 -34.84787 -32.49784 -32.26835 -30.47422 -28.08627 -26.97701 -26.94319 -26.44717 -25.88296 -23.38664 -22.36551 -21.34097 -19.27079 -18.14199 -16.76229 -16.35505 -16.22052 -15.68328 -14.99652 -14.70209 -14.68030 -14.33693 -13.90239 -13.82482 -13.43028 -13.15613 -13.09114 -12.71341 -12.41189 -12.39518 -12.24644 -12.07925 -11.84474 -11.65688 -11.31901 -11.23920 -11.12162 -10.97811 -10.96229 -10.77813 -10.68039 -10.48383 -10.38276 -10.26233 -10.20580 -9.81902 -9.72622 -9.07787 -8.70516 -8.41054 -8.05854 -7.69273 -6.27504 -4.37018 1.27839 1.63253 2.65968 3.19148 3.27501 3.29932 3.37594 3.84201 4.17226 4.29957 4.98936 5.03510 5.06275 5.19827 5.22423 5.34106 5.35494 5.47896 5.58658 5.65895 5.79388 5.87986 5.89131 5.93007 5.96533 6.07086 6.11855 6.17616 6.20345 6.29463 6.31898 6.39969 6.49209 6.56645 6.62550 6.64297 6.72059 6.78403 6.84597 6.92302 7.16985 7.24944 7.49196 7.67036 7.92674 8.29679 8.70281 8.95056 9.31210 10.76233 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008533 B = 0.007168 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.490457 B = 3905.120067 C = 6464.837092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.098 4.098 4 C -0.045 4.045 5 Cl -0.067 7.067 6 C -0.094 4.094 7 C -0.120 4.120 8 C 0.559 3.441 9 O -0.565 6.565 10 N -0.582 5.582 11 C 0.200 3.800 12 C -0.550 4.550 13 H 0.064 0.936 14 C 0.076 3.924 15 N -0.871 5.871 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.130 3.870 21 C -0.084 4.084 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.067 4.067 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.216 0.784 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 -2.846 -1.466 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.117 4.117 4 C -0.072 4.072 5 Cl -0.038 7.038 6 C -0.111 4.111 7 C -0.123 4.123 8 C 0.348 3.652 9 O -0.447 6.447 10 N -0.310 5.310 11 C 0.081 3.919 12 C -0.588 4.588 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.507 5.507 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.007 3.993 21 C -0.086 4.086 22 C -0.199 4.199 23 C -0.193 4.193 24 C -0.190 4.190 25 C -0.086 4.086 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.232 0.768 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.381 -3.046 -1.335 9.017 hybrid contribution 0.909 0.746 0.547 1.297 sum -7.472 -2.300 -0.788 7.857 Atomic orbital electron populations 1.20704 0.90738 1.02607 1.02195 1.19605 0.96015 0.92208 1.02764 1.21025 0.92225 0.98187 1.00238 1.20852 0.91885 0.88022 1.06441 1.98363 1.77460 1.31036 1.96932 1.23523 1.06677 0.89121 0.91807 1.19940 0.93708 0.93624 1.05045 1.18081 0.81518 0.87226 0.78363 1.90661 1.69416 1.37449 1.47191 1.48000 1.16219 1.09550 1.57215 1.20504 0.93877 0.81702 0.95783 1.21419 1.22391 1.10735 1.04279 0.91752 1.24919 0.96498 0.96151 0.95477 1.69910 1.40055 1.17743 1.22992 0.86594 0.81494 0.78203 0.81995 1.20382 1.20814 1.19534 1.21386 0.97382 0.84552 0.95980 1.20954 0.96062 0.95180 0.96360 1.21980 1.01131 1.00373 0.96400 1.21780 1.00483 0.95766 1.01286 1.21838 0.94691 1.01489 1.00973 1.21083 0.92763 0.97848 0.96944 0.91332 0.91665 0.91518 0.85546 0.76848 0.93807 0.91806 0.92183 0.90134 0.90922 0.92596 0.93723 0.91508 0.92811 0.92936 0.92677 0.93147 0.93904 0.91929 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.11 -1.56 5.87 -104.69 -0.61 -2.18 16 3 C -0.10 -1.52 9.47 -39.46 -0.37 -1.90 16 4 C -0.05 -0.84 6.31 -39.55 -0.25 -1.09 16 5 Cl -0.07 -1.23 28.95 -51.86 -1.50 -2.73 16 6 C -0.09 -1.94 7.27 -39.15 -0.28 -2.22 16 7 C -0.12 -2.38 5.60 -104.97 -0.59 -2.97 16 8 C 0.56 11.75 5.68 -12.33 -0.07 11.68 16 9 O -0.57 -12.48 14.64 5.32 0.08 -12.40 16 10 N -0.58 -11.95 2.01 -176.17 -0.35 -12.30 16 11 C 0.20 4.51 3.95 -5.19 -0.02 4.49 16 12 C -0.55 -13.50 7.53 -34.44 -0.26 -13.76 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.08 1.88 5.34 -17.81 -0.10 1.78 16 15 N -0.87 -22.22 13.29 55.43 0.74 -21.49 16 16 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.13 2.38 4.59 -4.04 -0.02 2.36 16 21 C -0.08 -1.33 0.85 -154.51 -0.13 -1.46 16 22 C -0.14 -2.25 7.51 37.16 0.28 -1.97 16 23 C -0.14 -1.76 8.47 37.16 0.31 -1.45 16 24 C -0.13 -2.13 7.12 37.16 0.26 -1.87 16 25 C -0.07 -1.15 9.24 -39.18 -0.36 -1.51 16 26 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.24 16 29 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.22 4.96 3.04 -52.48 -0.16 4.80 16 31 H 0.04 1.03 5.74 -51.93 -0.30 0.73 16 32 H 0.06 1.51 3.98 -52.39 -0.21 1.30 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.08 1.48 8.07 -51.92 -0.42 1.06 16 35 H 0.07 1.35 7.37 -51.93 -0.38 0.97 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.20 5.80 -51.93 -0.30 0.90 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.89 6.63 -51.93 -0.34 0.55 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16 45 H 0.13 2.06 7.91 -52.49 -0.42 1.64 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -26.08 367.67 -9.04 -35.12 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.67 Total: 6.18 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.85 Total: -12.82 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.38 Total: -33.79 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.50 Total: -2.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.08 -9.04 -35.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152787823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.551 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds