Wall clock time and date at job start Tue Mar 31 2020 14:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48495 * 109.47546 * 270.00393 * 3 2 1 5 5 H 1.48503 * 109.47130 * 30.00409 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99898 * 3 2 1 7 7 C 1.37880 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47223 * 179.97438 * 10 9 7 12 12 C 1.46841 * 110.99562 * 65.79174 * 11 10 9 13 13 C 1.53046 * 109.52213 * 185.83767 * 12 11 10 14 14 C 1.53122 * 109.27606 * 300.82130 * 13 12 11 15 15 C 1.53118 * 109.15815 * 57.65564 * 14 13 12 16 16 H 1.09001 * 109.53953 * 62.30710 * 15 14 13 17 17 C 1.53005 * 109.50208 * 182.40480 * 15 14 13 18 18 O 1.42904 * 109.46697 * 294.80035 * 17 15 14 19 19 C 1.35930 * 117.00011 * 179.97438 * 18 17 15 20 20 C 1.38710 * 120.05706 * 359.97438 * 19 18 17 21 21 C 1.38154 * 119.95648 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.07444 * 0.02562 * 21 20 19 23 23 C 1.38248 * 120.12113 * 359.73568 * 22 21 20 24 24 C 1.38256 * 120.04384 * 0.51907 * 23 22 21 25 25 Cl 1.73599 * 120.04286 * 179.76756 * 24 23 22 26 26 C 1.46846 * 110.99734 * 189.99944 * 11 10 9 27 27 H 0.96999 * 119.99755 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47215 * 60.00068 * 9 7 2 29 29 H 1.09001 * 109.46684 * 300.00343 * 9 7 2 30 30 H 1.09005 * 109.47012 * 59.99821 * 10 9 7 31 31 H 1.08995 * 109.47012 * 300.00353 * 10 9 7 32 32 H 1.08995 * 109.46907 * 305.85492 * 12 11 10 33 33 H 1.09004 * 109.46395 * 65.82686 * 12 11 10 34 34 H 1.08993 * 109.49897 * 60.76263 * 13 12 11 35 35 H 1.08993 * 109.50551 * 180.84165 * 13 12 11 36 36 H 1.08996 * 109.52277 * 297.75063 * 14 13 12 37 37 H 1.08996 * 109.52058 * 177.55603 * 14 13 12 38 38 H 1.08998 * 109.47420 * 174.80128 * 17 15 14 39 39 H 1.09002 * 109.47027 * 54.79669 * 17 15 14 40 40 H 1.07994 * 120.01994 * 0.04205 * 20 19 18 41 41 H 1.07996 * 119.96220 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.93680 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.98223 * 180.28003 * 23 22 21 44 44 H 1.09000 * 109.46259 * 54.15118 * 26 11 10 45 45 H 1.08998 * 109.46824 * 294.17593 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 0.7604 -5.1092 -1.2500 13 6 -0.1039 -6.3688 -1.1557 14 6 0.7961 -7.5818 -0.9047 15 6 1.6021 -7.3530 0.3769 16 1 0.9221 -7.2640 1.2242 17 6 2.5482 -8.5340 0.6031 18 8 1.7838 -9.7163 0.8484 19 6 2.4770 -10.8643 1.0702 20 6 3.8639 -10.8531 1.0517 21 6 4.5664 -12.0212 1.2769 22 6 3.8884 -13.2015 1.5202 23 6 2.5062 -13.2153 1.5443 24 6 1.7982 -12.0503 1.3144 25 17 0.0625 -12.0690 1.3387 26 6 2.4170 -6.0650 0.2382 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 0.1214 -4.2418 -1.4145 33 1 1.4582 -5.2091 -2.0815 34 1 -0.8112 -6.2639 -0.3331 35 1 -0.6493 -6.5066 -2.0892 36 1 1.4777 -7.7099 -1.7456 37 1 0.1812 -8.4749 -0.7937 38 1 3.1862 -8.3290 1.4628 39 1 3.1670 -8.6786 -0.2825 40 1 4.3943 -9.9317 0.8616 41 1 5.6462 -12.0126 1.2620 42 1 4.4398 -14.1133 1.6964 43 1 1.9790 -14.1376 1.7390 44 1 2.9810 -5.8916 1.1546 45 1 3.1069 -6.1604 -0.6003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157094415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:21 Heat of formation + Delta-G solvation = -34.489104 kcal Electronic energy + Delta-G solvation = -24350.750463 eV Core-core repulsion = 20779.443724 eV Total energy + Delta-G solvation = -3571.306740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55736 -38.96307 -37.66093 -36.58089 -34.43235 -32.65339 -31.68505 -31.16321 -30.10470 -29.21933 -26.35457 -25.09161 -23.28524 -22.94654 -22.50908 -21.73391 -19.88743 -19.56895 -18.59672 -16.75112 -16.50278 -16.32070 -16.16043 -15.24499 -14.97286 -14.68036 -14.49369 -14.32844 -14.22021 -13.93458 -13.69431 -13.30899 -13.01419 -12.73431 -12.46993 -12.26247 -12.11448 -11.83084 -11.76140 -11.59318 -11.36042 -11.11392 -11.04742 -10.94460 -10.85111 -10.62875 -10.55216 -10.29661 -10.12173 -9.79327 -9.34003 -9.27550 -9.11878 -8.51394 -8.32982 -7.73547 -5.99701 -4.02162 0.75998 0.95822 1.93833 2.81239 3.25288 3.31568 3.37944 3.40964 4.27898 4.40115 4.45033 4.51835 4.65261 4.71519 4.83762 4.87733 4.92343 5.06971 5.19016 5.26407 5.32981 5.35950 5.39966 5.52695 5.58099 5.71481 5.76457 5.81403 5.87431 5.95408 6.01942 6.05842 6.15500 6.22369 6.27405 6.29652 6.44688 6.55180 6.59384 6.95695 7.01906 7.50162 7.57753 7.79509 7.89710 8.08305 8.43057 9.05030 9.61355 11.11607 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.002115 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.069268 B =13236.498798 C =13917.157178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.536 5.536 12 C 0.053 3.947 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.082 4.082 16 H 0.092 0.908 17 C 0.064 3.936 18 O -0.297 6.297 19 C 0.146 3.854 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.073 4.073 25 Cl -0.057 7.057 26 C 0.065 3.935 27 H 0.260 0.740 28 H 0.017 0.983 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.088 0.912 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.072 0.928 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -28.009 1.147 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.062 4.062 11 N -0.261 5.261 12 C -0.075 4.075 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.100 4.100 16 H 0.110 0.890 17 C -0.011 4.011 18 O -0.209 6.209 19 C 0.099 3.901 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.171 4.171 23 C -0.093 4.093 24 C -0.101 4.101 25 Cl -0.028 7.028 26 C -0.064 4.064 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.091 0.909 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.682 -27.809 1.526 28.424 hybrid contribution 1.202 1.013 -0.683 1.714 sum 6.885 -26.796 0.844 27.679 Atomic orbital electron populations 1.69973 1.06002 1.26575 1.50599 1.24998 0.94842 0.99178 0.95335 0.86595 0.79833 0.83521 0.78040 1.20729 1.21197 1.19917 1.21186 0.92949 0.91066 1.50906 0.92838 1.19102 0.93971 0.90034 0.97844 1.22327 0.96758 0.88238 0.98898 1.61949 1.27148 1.02028 1.34927 1.22138 0.96817 0.98617 0.89897 1.21598 0.98086 0.93930 1.01819 1.21583 0.98486 0.98608 0.96193 1.21190 0.97215 0.91347 1.00284 0.89009 1.22972 0.94574 0.82955 1.00616 1.86182 1.35373 1.14824 1.84550 1.18750 0.90311 0.86122 0.94952 1.21309 0.92169 1.00498 1.07998 1.21069 1.00269 0.91871 0.96093 1.21015 0.93410 0.98723 1.03918 1.20931 0.94193 0.96304 0.97847 1.20242 0.85605 0.93151 1.11072 1.98378 1.08521 1.98775 1.97112 1.21926 0.93788 0.90263 1.00434 0.92992 0.96434 0.95675 0.92101 0.96258 0.89417 0.95739 0.91020 0.91839 0.92674 0.91414 0.91621 0.91888 0.84495 0.85182 0.85061 0.84459 0.90921 0.95427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 10 C 0.06 1.35 4.90 -3.83 -0.02 1.33 16 11 N -0.54 -9.61 4.66 -234.67 -1.09 -10.70 16 12 C 0.05 0.90 5.29 -3.83 -0.02 0.88 16 13 C -0.12 -1.62 6.09 -26.64 -0.16 -1.78 16 14 C -0.11 -1.38 5.16 -26.61 -0.14 -1.51 16 15 C -0.08 -1.01 2.59 -90.53 -0.23 -1.24 16 16 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 17 C 0.06 0.66 4.12 37.16 0.15 0.81 16 18 O -0.30 -3.46 9.19 -19.52 -0.18 -3.64 16 19 C 0.15 1.55 6.68 -39.19 -0.26 1.29 16 20 C -0.20 -1.73 9.04 -39.44 -0.36 -2.09 16 21 C -0.07 -0.53 10.04 -39.60 -0.40 -0.93 16 22 C -0.15 -1.03 10.04 -39.56 -0.40 -1.43 16 23 C -0.07 -0.59 9.83 -39.57 -0.39 -0.98 16 24 C -0.07 -0.75 6.33 -39.36 -0.25 -1.00 16 25 Cl -0.06 -0.61 28.50 -51.86 -1.48 -2.09 16 26 C 0.06 0.91 4.74 -3.83 -0.02 0.89 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.25 7.99 -51.93 -0.41 0.84 16 31 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.09 1.68 6.21 -51.93 -0.32 1.36 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 39 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 40 H 0.14 0.99 6.30 -52.49 -0.33 0.66 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 45 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -30.79 374.33 -11.65 -42.43 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -7.22 Total: -3.46 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -3.04 Total: -18.69 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.36 Total: -36.82 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.18 Total: -3.64 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.79 -11.65 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157094415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.942 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds