Wall clock time and date at job start Tue Mar 31 2020 14:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48495 * 109.47546 * 270.00393 * 3 2 1 5 5 H 1.48503 * 109.47130 * 30.00409 * 3 2 1 6 6 H 1.48499 * 109.46986 * 149.99898 * 3 2 1 7 7 C 1.37880 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47223 * 179.97438 * 10 9 7 12 12 C 1.46841 * 110.99562 * 65.79174 * 11 10 9 13 13 C 1.53046 * 109.52213 * 185.83767 * 12 11 10 14 14 C 1.53122 * 109.27606 * 300.82130 * 13 12 11 15 15 C 1.53118 * 109.15815 * 57.65564 * 14 13 12 16 16 H 1.09001 * 109.53953 * 62.30710 * 15 14 13 17 17 C 1.53005 * 109.50208 * 182.40480 * 15 14 13 18 18 O 1.42904 * 109.46697 * 294.80035 * 17 15 14 19 19 C 1.35930 * 117.00011 * 179.97438 * 18 17 15 20 20 C 1.38710 * 120.05706 * 359.97438 * 19 18 17 21 21 C 1.38154 * 119.95648 * 180.02562 * 20 19 18 22 22 C 1.38275 * 120.07444 * 0.02562 * 21 20 19 23 23 C 1.38248 * 120.12113 * 359.73568 * 22 21 20 24 24 C 1.38256 * 120.04384 * 0.51907 * 23 22 21 25 25 Cl 1.73599 * 120.04286 * 179.76756 * 24 23 22 26 26 C 1.46846 * 110.99734 * 189.99944 * 11 10 9 27 27 H 0.96999 * 119.99755 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47215 * 60.00068 * 9 7 2 29 29 H 1.09001 * 109.46684 * 300.00343 * 9 7 2 30 30 H 1.09005 * 109.47012 * 59.99821 * 10 9 7 31 31 H 1.08995 * 109.47012 * 300.00353 * 10 9 7 32 32 H 1.08995 * 109.46907 * 305.85492 * 12 11 10 33 33 H 1.09004 * 109.46395 * 65.82686 * 12 11 10 34 34 H 1.08993 * 109.49897 * 60.76263 * 13 12 11 35 35 H 1.08993 * 109.50551 * 180.84165 * 13 12 11 36 36 H 1.08996 * 109.52277 * 297.75063 * 14 13 12 37 37 H 1.08996 * 109.52058 * 177.55603 * 14 13 12 38 38 H 1.08998 * 109.47420 * 174.80128 * 17 15 14 39 39 H 1.09002 * 109.47027 * 54.79669 * 17 15 14 40 40 H 1.07994 * 120.01994 * 0.04205 * 20 19 18 41 41 H 1.07996 * 119.96220 * 179.97438 * 21 20 19 42 42 H 1.08003 * 119.93680 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.98223 * 180.28003 * 23 22 21 44 44 H 1.09000 * 109.46259 * 54.15118 * 26 11 10 45 45 H 1.08998 * 109.46824 * 294.17593 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 0.7604 -5.1092 -1.2500 13 6 -0.1039 -6.3688 -1.1557 14 6 0.7961 -7.5818 -0.9047 15 6 1.6021 -7.3530 0.3769 16 1 0.9221 -7.2640 1.2242 17 6 2.5482 -8.5340 0.6031 18 8 1.7838 -9.7163 0.8484 19 6 2.4770 -10.8643 1.0702 20 6 3.8639 -10.8531 1.0517 21 6 4.5664 -12.0212 1.2769 22 6 3.8884 -13.2015 1.5202 23 6 2.5062 -13.2153 1.5443 24 6 1.7982 -12.0503 1.3144 25 17 0.0625 -12.0690 1.3387 26 6 2.4170 -6.0650 0.2382 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 0.1214 -4.2418 -1.4145 33 1 1.4582 -5.2091 -2.0815 34 1 -0.8112 -6.2639 -0.3331 35 1 -0.6493 -6.5066 -2.0892 36 1 1.4777 -7.7099 -1.7456 37 1 0.1812 -8.4749 -0.7937 38 1 3.1862 -8.3290 1.4628 39 1 3.1670 -8.6786 -0.2825 40 1 4.3943 -9.9317 0.8616 41 1 5.6462 -12.0126 1.2620 42 1 4.4398 -14.1133 1.6964 43 1 1.9790 -14.1376 1.7390 44 1 2.9810 -5.8916 1.1546 45 1 3.1069 -6.1604 -0.6003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157094415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:20 Heat of formation + Delta-G solvation = -51.018333 kcal Electronic energy + Delta-G solvation = -24351.467225 eV Core-core repulsion = 20779.443724 eV Total energy + Delta-G solvation = -3572.023501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27902 -40.09761 -38.46797 -37.30213 -36.02007 -34.50534 -32.80162 -31.76719 -31.25975 -30.60136 -27.30850 -26.88289 -24.51465 -23.96895 -23.31282 -22.86771 -21.42881 -20.70045 -19.30612 -18.59463 -17.37689 -17.08570 -16.99471 -16.55408 -16.48726 -16.02952 -15.61433 -15.30773 -15.22909 -14.84594 -14.71178 -14.52784 -14.31876 -13.99070 -13.84484 -13.64886 -13.10895 -13.02042 -12.82303 -12.80619 -12.50461 -12.44603 -12.31580 -12.12901 -11.96212 -11.86974 -11.74181 -11.70373 -11.51621 -11.33359 -11.11540 -11.06708 -10.52930 -9.88126 -9.18771 -9.16046 -8.19805 -6.31208 0.16407 0.35175 1.23663 1.40087 1.41771 1.52826 2.05511 2.40528 2.66810 3.08729 3.13505 3.67871 3.73060 3.82557 3.92082 3.96040 4.17328 4.18166 4.30991 4.35584 4.36299 4.39005 4.45950 4.48510 4.52865 4.61434 4.63788 4.78617 4.80566 4.85684 5.00224 5.04307 5.09401 5.12305 5.17002 5.27922 5.31822 5.41521 5.46920 5.47838 5.67448 5.72624 5.79314 6.11195 6.28362 6.33816 6.36742 6.86294 7.37810 8.92311 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026557 B = 0.002115 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.069268 B =13236.498798 C =13917.157178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.081 3.919 11 N -0.552 5.552 12 C 0.055 3.945 13 C -0.110 4.110 14 C -0.104 4.104 15 C -0.075 4.075 16 H 0.074 0.926 17 C 0.070 3.930 18 O -0.316 6.316 19 C 0.121 3.879 20 C -0.207 4.207 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.079 4.079 24 C -0.095 4.095 25 Cl -0.074 7.074 26 C 0.066 3.934 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.010 1.010 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.081 0.919 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -29.495 1.037 30.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.046 4.046 11 N -0.277 5.277 12 C -0.073 4.073 13 C -0.148 4.148 14 C -0.141 4.141 15 C -0.094 4.094 16 H 0.092 0.908 17 C -0.005 4.005 18 O -0.230 6.230 19 C 0.075 3.925 20 C -0.225 4.225 21 C -0.092 4.092 22 C -0.165 4.165 23 C -0.097 4.097 24 C -0.122 4.122 25 Cl -0.045 7.045 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.008 0.992 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.099 0.901 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.497 -29.324 1.417 30.563 hybrid contribution 0.333 1.383 -0.633 1.557 sum 8.831 -27.941 0.784 29.314 Atomic orbital electron populations 1.70121 1.07860 1.27738 1.51482 1.25993 0.95766 1.03414 0.94706 0.85415 0.78660 0.78289 0.78475 1.19759 1.20840 1.18591 1.21629 0.93550 0.92218 1.50776 0.92041 1.18931 0.94255 0.92043 0.94966 1.21948 0.95307 0.88168 0.99181 1.61841 1.28022 1.02165 1.35648 1.22088 0.96741 0.98646 0.89798 1.21552 0.97777 0.93306 1.02187 1.21526 0.98376 0.97574 0.96654 1.21048 0.97151 0.91628 0.99559 0.90800 1.22865 0.93811 0.81906 1.01889 1.86127 1.36243 1.15420 1.85185 1.18992 0.91261 0.85765 0.96506 1.21546 0.91407 1.01782 1.07810 1.21468 1.01735 0.91292 0.94706 1.21417 0.92952 0.99881 1.02259 1.21224 0.94986 0.96177 0.97362 1.20527 0.84949 0.94102 1.12598 1.98364 1.10049 1.98829 1.97285 1.21981 0.93545 0.89345 1.01307 0.92807 0.98794 0.99175 0.91575 0.96008 0.92837 0.94985 0.92379 0.90235 0.91455 0.91066 0.90410 0.90324 0.83270 0.82408 0.82157 0.82930 0.90097 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.92 4.90 29.85 0.15 2.07 16 10 C 0.08 3.44 4.90 86.30 0.42 3.87 16 11 N -0.55 -20.00 4.66 -896.36 -4.17 -24.17 16 12 C 0.06 1.90 5.29 86.33 0.46 2.36 16 13 C -0.11 -3.08 6.09 30.65 0.19 -2.89 16 14 C -0.10 -2.45 5.16 30.67 0.16 -2.29 16 15 C -0.07 -1.77 2.59 -10.74 -0.03 -1.80 16 16 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 17 C 0.07 1.31 4.12 71.98 0.30 1.61 16 18 O -0.32 -7.08 9.19 -92.76 -0.85 -7.93 16 19 C 0.12 2.43 6.68 22.52 0.15 2.58 16 20 C -0.21 -3.07 9.04 22.36 0.20 -2.87 16 21 C -0.07 -0.80 10.04 22.26 0.22 -0.58 16 22 C -0.15 -1.52 10.04 22.28 0.22 -1.30 16 23 C -0.08 -1.11 9.83 22.28 0.22 -0.89 16 24 C -0.09 -1.85 6.33 22.41 0.14 -1.71 16 25 Cl -0.07 -1.59 28.50 -2.72 -0.08 -1.67 16 26 C 0.07 1.78 4.74 86.33 0.41 2.19 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 28 H -0.01 -0.36 6.43 -2.38 -0.02 -0.38 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.07 2.70 7.99 -2.38 -0.02 2.69 16 31 H 0.02 0.90 8.12 -2.39 -0.02 0.89 16 32 H 0.05 2.18 6.21 -2.39 -0.01 2.17 16 33 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.67 7.90 -2.39 -0.02 1.65 16 38 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 39 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 40 H 0.15 1.73 6.30 -2.91 -0.02 1.71 16 41 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.56 374.33 2.07 -66.49 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.96 Total: 8.33 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.91 Total: -30.25 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -3.89 Total: -81.50 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.85 Total: -7.93 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -68.56 2.07 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157094415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.473 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds