Wall clock time and date at job start Tue Mar 31 2020 14:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48509 * 109.46921 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47315 * 119.99727 * 3 2 1 7 7 C 1.37882 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99610 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47059 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46929 * 110.98461 * 314.22850 * 11 10 9 13 13 C 1.53037 * 109.47910 * 174.18240 * 12 11 10 14 14 C 1.53114 * 109.31211 * 59.15772 * 13 12 11 15 15 C 1.53126 * 109.16239 * 302.32855 * 14 13 12 16 16 H 1.09006 * 109.49902 * 297.71480 * 15 14 13 17 17 C 1.53001 * 109.50609 * 177.63506 * 15 14 13 18 18 O 1.42902 * 109.46793 * 64.99711 * 17 15 14 19 19 C 1.35926 * 116.99784 * 180.02562 * 18 17 15 20 20 C 1.38710 * 120.05580 * 0.02562 * 19 18 17 21 21 C 1.38153 * 119.95558 * 180.02562 * 20 19 18 22 22 C 1.38280 * 120.07644 * 0.02562 * 21 20 19 23 23 C 1.38240 * 120.11953 * 0.02562 * 22 21 20 24 24 C 1.38261 * 120.04498 * 359.68699 * 23 22 21 25 25 Cl 1.73593 * 120.04294 * 180.31571 * 24 23 22 26 26 C 1.46850 * 110.99740 * 190.00065 * 11 10 9 27 27 H 0.97009 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46912 * 59.99827 * 9 7 2 29 29 H 1.08998 * 109.47385 * 300.00013 * 9 7 2 30 30 H 1.08995 * 109.46922 * 59.99836 * 10 9 7 31 31 H 1.09003 * 109.46861 * 299.99845 * 10 9 7 32 32 H 1.08994 * 109.51866 * 54.15475 * 12 11 10 33 33 H 1.09007 * 109.45009 * 294.16157 * 12 11 10 34 34 H 1.09002 * 109.50283 * 299.19589 * 13 12 11 35 35 H 1.09003 * 109.50113 * 179.11776 * 13 12 11 36 36 H 1.09006 * 109.52545 * 62.23190 * 14 13 12 37 37 H 1.09002 * 109.52724 * 182.41937 * 14 13 12 38 38 H 1.08999 * 109.46986 * 184.99962 * 17 15 14 39 39 H 1.08998 * 109.46928 * 304.99736 * 17 15 14 40 40 H 1.08001 * 120.02690 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.96682 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.94060 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.98362 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.46198 * 65.82029 * 26 11 10 45 45 H 1.08999 * 109.45191 * 305.84745 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5106 -4.9343 -0.0001 12 6 0.4185 -4.9118 0.9826 13 6 -0.4111 -6.1913 0.8530 14 6 0.4906 -7.4057 1.0911 15 6 1.6459 -7.3786 0.0865 16 1 1.2493 -7.4531 -0.9261 17 6 2.5845 -8.5566 0.3554 18 8 1.8944 -9.7824 0.1045 19 6 2.5910 -10.9335 0.2977 20 6 3.9112 -10.8839 0.7205 21 6 4.6175 -12.0551 0.9156 22 6 4.0100 -13.2766 0.6895 23 6 2.6948 -13.3296 0.2671 24 6 1.9815 -12.1608 0.0760 25 17 0.3274 -12.2277 -0.4466 26 6 2.4166 -6.0652 0.2380 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6239 -2.5568 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6044 -0.8895 32 1 -0.2181 -4.0462 0.7998 33 1 0.8358 -4.8498 1.9877 34 1 -0.8400 -6.2472 -0.1475 35 1 -1.2120 -6.1822 1.5923 36 1 0.8889 -7.3704 2.1052 37 1 -0.0871 -8.3203 0.9574 38 1 3.4521 -8.4870 -0.3008 39 1 2.9121 -8.5301 1.3947 40 1 4.3867 -9.9304 0.8969 41 1 5.6455 -12.0167 1.2444 42 1 4.5641 -14.1908 0.8432 43 1 2.2226 -14.2848 0.0908 44 1 2.8245 -5.9977 1.2465 45 1 3.2311 -6.0364 -0.4859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157094538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:24 Heat of formation + Delta-G solvation = -32.064317 kcal Electronic energy + Delta-G solvation = -24383.465678 eV Core-core repulsion = 20812.264085 eV Total energy + Delta-G solvation = -3571.201593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55693 -38.97081 -37.67134 -36.58182 -34.48872 -32.63419 -31.65973 -31.16105 -30.12229 -29.17863 -26.33819 -25.10879 -23.33567 -22.94067 -22.47472 -21.84751 -19.86137 -19.40001 -18.59536 -16.75096 -16.54722 -16.34084 -16.15309 -15.22914 -14.96561 -14.63308 -14.46879 -14.30136 -14.24063 -13.97695 -13.75663 -13.29694 -12.94838 -12.69074 -12.52417 -12.26202 -12.12723 -11.82144 -11.76131 -11.59623 -11.37295 -11.07567 -11.03819 -10.93947 -10.83457 -10.59873 -10.57056 -10.27222 -10.05703 -9.88009 -9.32927 -9.27540 -9.08889 -8.51349 -8.35330 -7.71909 -6.01571 -4.04035 0.76013 0.95868 1.93795 2.81371 3.25321 3.32219 3.36791 3.38948 4.28965 4.40292 4.44944 4.51592 4.65903 4.71595 4.84559 4.88478 4.93275 5.07140 5.20473 5.27462 5.33154 5.34342 5.42179 5.55168 5.62215 5.71633 5.77813 5.81506 5.90294 6.00175 6.02124 6.08767 6.18737 6.23228 6.30405 6.32698 6.43895 6.59677 6.64722 6.90774 7.01995 7.49531 7.59865 7.76898 7.84057 8.03341 8.41042 9.02277 9.59586 11.09709 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.002112 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.078839 B =13257.078756 C =14005.142489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.049 3.951 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.081 4.081 16 H 0.091 0.909 17 C 0.064 3.936 18 O -0.297 6.297 19 C 0.146 3.854 20 C -0.201 4.201 21 C -0.075 4.075 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.073 4.073 25 Cl -0.057 7.057 26 C 0.065 3.935 27 H 0.261 0.739 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.029 0.971 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -27.772 2.570 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.063 4.063 11 N -0.262 5.262 12 C -0.078 4.078 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.100 4.100 16 H 0.109 0.891 17 C -0.011 4.011 18 O -0.209 6.209 19 C 0.099 3.901 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.171 4.171 23 C -0.093 4.093 24 C -0.101 4.101 25 Cl -0.028 7.028 26 C -0.064 4.064 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.047 0.953 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.516 -27.653 1.996 28.268 hybrid contribution 1.002 1.135 0.852 1.737 sum 6.518 -26.518 2.848 27.456 Atomic orbital electron populations 1.69953 1.06013 1.26748 1.50508 1.24995 0.94855 0.99202 0.95270 0.86646 0.79569 0.83105 0.78589 1.20209 1.21270 1.20312 1.21140 0.92951 0.91009 1.51057 0.92826 1.19240 0.94101 0.90428 0.97836 1.22319 0.97043 0.88012 0.98953 1.62006 1.11438 1.03218 1.49512 1.22241 0.94025 0.98684 0.92894 1.21613 0.97583 0.94012 1.02260 1.21590 0.96537 0.98843 0.97937 1.21184 0.95539 0.91320 1.01951 0.89092 1.22970 0.95737 0.81714 1.00700 1.86180 1.39940 1.12163 1.82641 1.18749 0.90526 0.85984 0.94874 1.21311 0.93499 1.00355 1.06810 1.21072 0.99851 0.91743 0.96633 1.21014 0.94643 0.98313 1.03098 1.20931 0.94201 0.96518 0.97627 1.20241 0.88063 0.92302 1.09471 1.98377 1.16685 1.98685 1.89048 1.21919 0.94936 0.90203 0.99341 0.92904 0.95645 0.96106 0.96256 0.91915 0.88697 0.95631 0.91157 0.91829 0.92654 0.91457 0.91651 0.91863 0.84490 0.85180 0.85062 0.84461 0.95314 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.54 4.22 -27.88 -0.12 0.42 16 10 C 0.06 1.33 5.21 -3.82 -0.02 1.31 16 11 N -0.54 -9.66 4.81 -234.60 -1.13 -10.79 16 12 C 0.05 0.86 4.85 -3.79 -0.02 0.84 16 13 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 14 C -0.11 -1.41 5.15 -26.61 -0.14 -1.55 16 15 C -0.08 -1.00 2.59 -90.54 -0.23 -1.24 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 17 C 0.06 0.66 4.13 37.16 0.15 0.81 16 18 O -0.30 -3.46 9.18 -19.51 -0.18 -3.64 16 19 C 0.15 1.55 6.68 -39.19 -0.26 1.29 16 20 C -0.20 -1.74 9.04 -39.44 -0.36 -2.09 16 21 C -0.07 -0.53 10.04 -39.60 -0.40 -0.93 16 22 C -0.15 -1.03 10.04 -39.57 -0.40 -1.43 16 23 C -0.07 -0.59 9.83 -39.57 -0.39 -0.98 16 24 C -0.07 -0.75 6.33 -39.36 -0.25 -1.00 16 25 Cl -0.06 -0.61 28.50 -51.86 -1.48 -2.09 16 26 C 0.06 0.92 4.71 -3.83 -0.02 0.90 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.56 6.21 -51.93 -0.32 0.23 16 30 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.90 5.82 -51.93 -0.30 1.60 16 33 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 39 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -30.47 373.23 -11.66 -42.13 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.19 Total: -2.91 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -3.02 Total: -18.93 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.39 Total: -36.74 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.18 Total: -3.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.47 -11.66 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157094538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.063 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds