Wall clock time and date at job start Tue Mar 31 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48509 * 109.46921 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47315 * 119.99727 * 3 2 1 7 7 C 1.37882 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99610 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47059 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46929 * 110.98461 * 314.22850 * 11 10 9 13 13 C 1.53037 * 109.47910 * 174.18240 * 12 11 10 14 14 C 1.53114 * 109.31211 * 59.15772 * 13 12 11 15 15 C 1.53126 * 109.16239 * 302.32855 * 14 13 12 16 16 H 1.09006 * 109.49902 * 297.71480 * 15 14 13 17 17 C 1.53001 * 109.50609 * 177.63506 * 15 14 13 18 18 O 1.42902 * 109.46793 * 64.99711 * 17 15 14 19 19 C 1.35926 * 116.99784 * 180.02562 * 18 17 15 20 20 C 1.38710 * 120.05580 * 0.02562 * 19 18 17 21 21 C 1.38153 * 119.95558 * 180.02562 * 20 19 18 22 22 C 1.38280 * 120.07644 * 0.02562 * 21 20 19 23 23 C 1.38240 * 120.11953 * 0.02562 * 22 21 20 24 24 C 1.38261 * 120.04498 * 359.68699 * 23 22 21 25 25 Cl 1.73593 * 120.04294 * 180.31571 * 24 23 22 26 26 C 1.46850 * 110.99740 * 190.00065 * 11 10 9 27 27 H 0.97009 * 120.00033 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46912 * 59.99827 * 9 7 2 29 29 H 1.08998 * 109.47385 * 300.00013 * 9 7 2 30 30 H 1.08995 * 109.46922 * 59.99836 * 10 9 7 31 31 H 1.09003 * 109.46861 * 299.99845 * 10 9 7 32 32 H 1.08994 * 109.51866 * 54.15475 * 12 11 10 33 33 H 1.09007 * 109.45009 * 294.16157 * 12 11 10 34 34 H 1.09002 * 109.50283 * 299.19589 * 13 12 11 35 35 H 1.09003 * 109.50113 * 179.11776 * 13 12 11 36 36 H 1.09006 * 109.52545 * 62.23190 * 14 13 12 37 37 H 1.09002 * 109.52724 * 182.41937 * 14 13 12 38 38 H 1.08999 * 109.46986 * 184.99962 * 17 15 14 39 39 H 1.08998 * 109.46928 * 304.99736 * 17 15 14 40 40 H 1.08001 * 120.02690 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.96682 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.94060 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.98362 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.46198 * 65.82029 * 26 11 10 45 45 H 1.08999 * 109.45191 * 305.84745 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5106 -4.9343 -0.0001 12 6 0.4185 -4.9118 0.9826 13 6 -0.4111 -6.1913 0.8530 14 6 0.4906 -7.4057 1.0911 15 6 1.6459 -7.3786 0.0865 16 1 1.2493 -7.4531 -0.9261 17 6 2.5845 -8.5566 0.3554 18 8 1.8944 -9.7824 0.1045 19 6 2.5910 -10.9335 0.2977 20 6 3.9112 -10.8839 0.7205 21 6 4.6175 -12.0551 0.9156 22 6 4.0100 -13.2766 0.6895 23 6 2.6948 -13.3296 0.2671 24 6 1.9815 -12.1608 0.0760 25 17 0.3274 -12.2277 -0.4466 26 6 2.4166 -6.0652 0.2380 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6239 -2.5568 0.8903 30 1 2.8717 -3.6044 0.8905 31 1 2.8717 -3.6044 -0.8895 32 1 -0.2181 -4.0462 0.7998 33 1 0.8358 -4.8498 1.9877 34 1 -0.8400 -6.2472 -0.1475 35 1 -1.2120 -6.1822 1.5923 36 1 0.8889 -7.3704 2.1052 37 1 -0.0871 -8.3203 0.9574 38 1 3.4521 -8.4870 -0.3008 39 1 2.9121 -8.5301 1.3947 40 1 4.3867 -9.9304 0.8969 41 1 5.6455 -12.0167 1.2444 42 1 4.5641 -14.1908 0.8432 43 1 2.2226 -14.2848 0.0908 44 1 2.8245 -5.9977 1.2465 45 1 3.2311 -6.0364 -0.4859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157094538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:23 Heat of formation + Delta-G solvation = -48.398479 kcal Electronic energy + Delta-G solvation = -24384.173980 eV Core-core repulsion = 20812.264085 eV Total energy + Delta-G solvation = -3571.909896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28193 -40.13239 -38.48208 -37.30153 -36.06114 -34.50087 -32.78917 -31.76831 -31.26067 -30.56788 -27.32639 -26.88748 -24.60951 -23.95897 -23.32957 -22.92558 -21.26522 -20.68195 -19.30604 -18.63214 -17.37635 -17.08778 -16.99939 -16.56512 -16.49981 -15.90984 -15.69801 -15.40246 -15.23921 -14.84304 -14.72655 -14.52070 -14.25747 -13.97912 -13.87336 -13.66058 -13.07063 -13.02485 -12.82482 -12.80372 -12.50353 -12.45694 -12.32934 -12.11656 -11.97874 -11.90127 -11.75606 -11.68778 -11.52579 -11.31687 -11.12373 -11.00163 -10.53395 -9.88095 -9.19278 -9.16656 -8.20444 -6.31780 0.16419 0.35200 1.23732 1.39898 1.43108 1.50975 2.05386 2.40256 2.66821 3.08809 3.12895 3.67857 3.73142 3.82606 3.91880 3.96415 4.17735 4.18424 4.32773 4.35545 4.36021 4.39094 4.46786 4.49561 4.51477 4.62091 4.63480 4.79421 4.80615 4.86012 4.99892 5.03365 5.07717 5.12371 5.17023 5.27940 5.31908 5.41261 5.45967 5.46976 5.66011 5.72578 5.78197 6.08077 6.27770 6.32477 6.35981 6.84781 7.37132 8.91247 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028388 B = 0.002112 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.078839 B =13257.078756 C =14005.142489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.030 3.970 10 C 0.079 3.921 11 N -0.549 5.549 12 C 0.053 3.947 13 C -0.110 4.110 14 C -0.104 4.104 15 C -0.074 4.074 16 H 0.077 0.923 17 C 0.070 3.930 18 O -0.316 6.316 19 C 0.121 3.879 20 C -0.207 4.207 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.079 4.079 24 C -0.094 4.094 25 Cl -0.074 7.074 26 C 0.066 3.934 27 H 0.264 0.736 28 H -0.009 1.009 29 H 0.001 0.999 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.038 0.962 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -29.243 3.300 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.048 4.048 11 N -0.273 5.273 12 C -0.075 4.075 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.093 4.093 16 H 0.095 0.905 17 C -0.005 4.005 18 O -0.229 6.229 19 C 0.075 3.925 20 C -0.226 4.226 21 C -0.092 4.092 22 C -0.165 4.165 23 C -0.097 4.097 24 C -0.122 4.122 25 Cl -0.045 7.045 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.057 0.943 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.133 -29.152 2.727 30.388 hybrid contribution 0.200 1.500 0.633 1.641 sum 8.334 -27.651 3.359 29.075 Atomic orbital electron populations 1.70099 1.07807 1.27839 1.51352 1.25974 0.95774 1.03359 0.94655 0.85482 0.78243 0.77988 0.79208 1.19138 1.20911 1.19103 1.21598 0.93554 0.92237 1.50978 0.92096 1.19059 0.94324 0.92167 0.95197 1.21975 0.95727 0.87967 0.99153 1.61945 1.12122 1.03099 1.50170 1.22143 0.93780 0.98929 0.92651 1.21560 0.97804 0.93227 1.02223 1.21532 0.96342 0.97817 0.98505 1.21040 0.95672 0.91483 1.01085 0.90491 1.22859 0.95134 0.80641 1.01842 1.86124 1.40782 1.12728 1.83298 1.18989 0.91506 0.85580 0.96441 1.21547 0.92809 1.01684 1.06525 1.21469 1.01012 0.91233 0.95497 1.21415 0.94118 0.99534 1.01440 1.21224 0.94804 0.96470 0.97246 1.20524 0.87652 0.93191 1.10796 1.98363 1.18064 1.98727 1.89342 1.21990 0.94695 0.89316 1.00233 0.92769 0.99060 0.98096 0.95921 0.91662 0.92370 0.95640 0.92060 0.90514 0.91753 0.90975 0.90273 0.90506 0.83294 0.82426 0.82160 0.82919 0.94346 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.60 4.22 29.85 0.13 1.72 16 10 C 0.08 3.36 5.21 86.30 0.45 3.81 16 11 N -0.55 -19.93 4.81 -896.13 -4.31 -24.24 16 12 C 0.05 1.90 4.85 86.31 0.42 2.32 16 13 C -0.11 -3.17 6.09 30.64 0.19 -2.98 16 14 C -0.10 -2.53 5.15 30.67 0.16 -2.37 16 15 C -0.07 -1.75 2.59 -10.74 -0.03 -1.77 16 16 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 17 C 0.07 1.31 4.13 71.98 0.30 1.61 16 18 O -0.32 -7.05 9.18 -92.71 -0.85 -7.90 16 19 C 0.12 2.42 6.68 22.52 0.15 2.57 16 20 C -0.21 -3.08 9.04 22.36 0.20 -2.88 16 21 C -0.07 -0.80 10.04 22.26 0.22 -0.58 16 22 C -0.15 -1.52 10.04 22.28 0.22 -1.30 16 23 C -0.08 -1.10 9.83 22.28 0.22 -0.88 16 24 C -0.09 -1.84 6.33 22.41 0.14 -1.70 16 25 Cl -0.07 -1.58 28.50 -2.72 -0.08 -1.65 16 26 C 0.07 1.78 4.71 86.33 0.41 2.18 16 27 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.00 0.05 6.21 -2.39 -0.01 0.03 16 30 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.06 2.71 8.14 -2.39 -0.02 2.70 16 32 H 0.06 2.49 5.82 -2.39 -0.01 2.48 16 33 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 38 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 39 H 0.08 1.22 7.66 -2.39 -0.02 1.21 16 40 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 41 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 43 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 Total: -1.00 -67.63 373.23 1.91 -65.72 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.96 Total: 9.28 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.87 Total: -30.76 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -4.02 Total: -81.06 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.85 Total: -7.90 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -67.63 1.91 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157094538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds