Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39644 * 120.15366 * 297.66177 * 3 2 1 5 5 C 1.37922 * 119.85042 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.14687 * 359.74286 * 5 4 3 7 7 C 1.38337 * 120.30770 * 0.51910 * 6 5 4 8 8 C 1.50696 * 119.92521 * 179.76089 * 7 6 5 9 9 N 1.46497 * 109.47235 * 269.71741 * 8 7 6 10 10 C 1.39251 * 120.00077 * 179.97438 * 9 8 7 11 11 N 1.32300 * 119.73428 * 0.02562 * 10 9 8 12 12 C 1.32012 * 121.67967 * 179.97438 * 11 10 9 13 13 C 1.38014 * 120.95430 * 359.97438 * 12 11 10 14 14 C 1.38849 * 119.36743 * 0.28127 * 13 12 11 15 15 C 1.38711 * 118.45733 * 359.45575 * 14 13 12 16 16 O 1.36011 * 120.49467 * 180.28630 * 15 14 13 17 17 C 1.42904 * 117.00151 * 0.25736 * 16 15 14 18 18 C 1.53002 * 109.47005 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47115 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00035 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00133 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00122 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00012 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47319 * 59.99743 * 23 21 19 25 25 H 1.48502 * 109.47090 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47036 * 299.99573 * 23 21 19 27 27 C 1.37970 * 120.15149 * 359.47838 * 7 6 5 28 28 H 1.07999 * 120.07866 * 359.96229 * 4 3 2 29 29 H 1.08001 * 119.93042 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.84549 * 180.27386 * 6 5 4 31 31 H 1.09005 * 109.47048 * 149.72243 * 8 7 6 32 32 H 1.09003 * 109.47303 * 29.72482 * 8 7 6 33 33 H 0.97000 * 119.99873 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.52531 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.31329 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.77313 * 179.69794 * 14 13 12 37 37 H 1.09002 * 109.46741 * 299.99619 * 17 16 15 38 38 H 1.08998 * 109.47235 * 60.00067 * 17 16 15 39 39 H 1.09000 * 109.46899 * 300.00313 * 18 17 16 40 40 H 1.08998 * 109.47181 * 59.99897 * 18 17 16 41 41 H 0.96999 * 119.99980 * 180.02562 * 22 21 19 42 42 H 1.07997 * 120.07806 * 180.23411 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2698 -0.5596 1.0695 5 6 4.6490 -0.5561 1.0628 6 6 5.3374 -0.0038 -0.0031 7 6 4.6487 0.5578 -1.0634 8 6 5.4070 1.1617 -2.2171 9 7 5.6527 2.5811 -1.9505 10 6 6.3422 3.3550 -2.8804 11 7 6.7725 2.8032 -4.0032 12 6 7.4294 3.5009 -4.9112 13 6 7.6933 4.8422 -4.7218 14 6 7.2652 5.4624 -3.5556 15 6 6.5723 4.7067 -2.6212 16 8 6.1288 5.2735 -1.4671 17 6 6.4059 6.6627 -1.2782 18 6 5.8348 7.1184 0.0661 19 6 6.1276 8.5832 0.2656 20 1 6.6673 9.1339 -0.4906 21 6 5.7064 9.2203 1.4134 22 7 5.0487 8.5498 2.3341 23 14 6.0686 11.0361 1.6604 24 1 5.4425 11.8192 0.5650 25 1 5.5145 11.4785 2.9652 26 1 7.5375 11.2540 1.6476 27 6 3.2690 0.5610 -1.0696 28 1 2.7338 -0.9945 1.9001 29 1 5.1930 -0.9894 1.8890 30 1 6.4174 -0.0076 -0.0054 31 1 4.8208 1.0597 -3.1304 32 1 6.3590 0.6443 -2.3368 33 1 5.3358 2.9816 -1.1259 34 1 7.7646 3.0151 -5.8158 35 1 8.2312 5.4032 -5.4717 36 1 7.4636 6.5096 -3.3817 37 1 7.4840 6.8226 -1.2875 38 1 5.9463 7.2375 -2.0822 39 1 4.7567 6.9583 0.0759 40 1 6.2948 6.5436 0.8699 41 1 4.7520 8.9982 3.1414 42 1 2.7325 0.9963 -1.8997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162271301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = 48.271138 kcal Electronic energy + Delta-G solvation = -24946.779485 eV Core-core repulsion = 21277.954005 eV Total energy + Delta-G solvation = -3668.825480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43031 -39.85253 -37.72844 -36.82587 -35.71167 -33.44602 -32.38785 -31.62934 -31.36762 -30.24677 -28.78870 -26.06129 -25.17922 -24.20920 -22.94200 -22.48981 -21.86931 -20.67633 -18.83631 -17.96072 -17.16768 -16.71204 -16.54390 -16.08833 -16.04077 -15.51449 -15.02854 -14.64126 -14.47577 -14.42615 -14.12516 -14.07406 -13.82375 -13.42666 -13.22733 -13.14551 -12.77401 -12.71662 -12.47461 -12.35960 -11.90907 -11.84342 -11.74491 -11.38511 -11.00803 -10.94488 -10.63918 -10.20285 -9.96863 -9.76188 -9.53797 -9.36072 -9.29947 -9.17221 -8.94055 -8.48100 -7.17205 -6.14062 -4.18971 0.44657 0.88615 1.53823 1.54628 2.41945 2.62016 3.26070 3.30804 3.31761 3.32126 3.58676 3.67848 3.70034 4.07358 4.32529 4.37318 4.50036 4.67770 4.74624 4.88820 5.00308 5.08663 5.19923 5.22516 5.24221 5.37441 5.46217 5.56133 5.58856 5.69200 5.89703 5.95099 5.95943 5.98123 6.16537 6.18418 6.35224 6.42763 6.58125 6.65052 7.16700 7.23184 7.37870 7.49966 7.58633 7.77508 7.99574 8.19329 8.33996 8.86198 9.45683 10.97292 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.003173 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.173241 B = 8821.432463 C =11452.077094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.255 3.745 3 C -0.032 4.032 4 C -0.064 4.064 5 C -0.121 4.121 6 C -0.067 4.067 7 C -0.106 4.106 8 C 0.179 3.821 9 N -0.720 5.720 10 C 0.380 3.620 11 N -0.516 5.516 12 C 0.090 3.910 13 C -0.191 4.191 14 C -0.138 4.138 15 C 0.040 3.960 16 O -0.316 6.316 17 C 0.068 3.932 18 C 0.028 3.972 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.049 4.049 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.417 0.583 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.264 0.736 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -18.627 -8.703 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.060 4.060 3 C -0.035 4.035 4 C -0.085 4.085 5 C -0.139 4.139 6 C -0.087 4.087 7 C -0.107 4.107 8 C 0.055 3.945 9 N -0.357 5.357 10 C 0.143 3.857 11 N -0.235 5.235 12 C -0.065 4.065 13 C -0.214 4.214 14 C -0.164 4.164 15 C -0.012 4.012 16 O -0.229 6.229 17 C -0.006 4.006 18 C -0.010 4.010 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.071 4.071 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.435 -19.722 -8.570 21.551 hybrid contribution 0.776 2.362 0.534 2.543 sum 2.210 -17.360 -8.036 19.257 Atomic orbital electron populations 1.81271 1.12072 1.08423 1.07456 1.25698 0.92660 0.93777 0.93891 1.15965 0.84348 1.05412 0.97817 1.21234 0.94505 0.96329 0.96425 1.21125 0.93562 1.00275 0.98938 1.21413 1.00784 0.94255 0.92207 1.19892 0.93160 1.00461 0.97163 1.20005 0.98956 0.81243 0.94257 1.44379 1.61643 1.08185 1.21524 1.17738 0.93406 0.85336 0.89251 1.67154 1.16007 1.38510 1.01834 1.22100 0.96072 0.91283 0.97001 1.21623 1.04967 0.96203 0.98581 1.21538 0.99675 1.00880 0.94341 1.19516 0.99987 0.92179 0.89542 1.86098 1.74324 1.28344 1.34131 1.23307 0.99605 0.75914 1.01771 1.19098 0.97194 0.95897 0.88768 1.20922 1.37421 0.93951 1.04360 0.92443 1.24974 0.94828 0.98530 0.95738 1.69957 1.37510 1.36482 1.08731 0.86556 0.78703 0.84671 0.77504 1.20083 1.21096 1.20086 1.21153 0.93658 0.95407 0.96835 0.84895 0.84627 0.84866 0.91030 0.90863 0.74550 0.83146 0.85401 0.84360 0.93242 0.93257 0.95466 0.95455 0.92631 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.62 18.54 41.84 0.78 -4.85 16 2 C 0.26 2.81 15.33 -22.47 -0.34 2.47 16 3 C -0.03 -0.28 5.73 -106.93 -0.61 -0.90 16 4 C -0.06 -0.46 9.76 -39.17 -0.38 -0.84 16 5 C -0.12 -0.79 10.03 -39.64 -0.40 -1.18 16 6 C -0.07 -0.49 9.69 -39.49 -0.38 -0.87 16 7 C -0.11 -0.90 5.24 -104.69 -0.55 -1.44 16 8 C 0.18 1.74 5.82 -5.20 -0.03 1.71 16 9 N -0.72 -9.22 5.70 -61.44 -0.35 -9.57 16 10 C 0.38 5.69 7.50 -154.71 -1.16 4.53 16 11 N -0.52 -7.16 9.57 -12.29 -0.12 -7.28 16 12 C 0.09 1.09 11.17 -17.56 -0.20 0.89 16 13 C -0.19 -2.35 10.10 -39.44 -0.40 -2.75 16 14 C -0.14 -2.04 9.14 -39.18 -0.36 -2.40 16 15 C 0.04 0.66 6.72 -38.92 -0.26 0.40 16 16 O -0.32 -6.00 9.38 -19.78 -0.19 -6.18 16 17 C 0.07 1.39 4.70 37.16 0.17 1.56 16 18 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 19 C -0.53 -14.37 9.11 -34.44 -0.31 -14.69 16 20 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 23 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C -0.05 -0.43 9.41 -39.16 -0.37 -0.80 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 31 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.42 5.63 7.81 -40.82 -0.32 5.31 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.14 1.97 6.44 -52.49 -0.34 1.63 16 37 H 0.05 0.96 7.69 -51.93 -0.40 0.56 16 38 H 0.05 0.97 7.71 -51.93 -0.40 0.56 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -31.60 374.07 -9.57 -41.17 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.22 Total: 2.51 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -5.83 Total: -12.14 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 1.04 Total: -46.90 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.19 Total: -6.18 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.60 -9.57 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162271301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.439 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds