Wall clock time and date at job start Tue Mar 31 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37910 * 120.07071 * 2 1 4 4 C 1.38490 * 120.13660 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 119.86959 * 179.97438 * 4 3 2 6 6 C 1.38530 * 120.26198 * 359.97438 * 4 3 2 7 7 C 1.37876 * 120.13613 * 359.97438 * 6 4 3 8 8 C 1.39593 * 120.06576 * 179.97438 * 2 1 3 9 9 C 1.47792 * 120.13187 * 359.74692 * 8 2 1 10 10 O 1.21562 * 119.99434 * 54.89553 * 9 8 2 11 11 N 1.34775 * 120.00240 * 234.90157 * 9 8 2 12 12 C 1.46496 * 119.99933 * 185.38972 * 11 9 8 13 13 C 1.50701 * 109.47179 * 89.99882 * 12 11 9 14 14 H 1.07997 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99708 * 179.97438 * 13 12 11 16 16 N 1.31503 * 120.00240 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99616 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47168 * 89.99848 * 17 15 13 19 19 H 1.48504 * 109.47081 * 210.00104 * 17 15 13 20 20 H 1.48501 * 109.47331 * 329.99985 * 17 15 13 21 21 C 1.46496 * 119.99721 * 5.38431 * 11 9 8 22 22 C 1.53002 * 109.46972 * 93.00043 * 21 11 9 23 23 C 1.53002 * 109.47356 * 63.68515 * 22 21 11 24 24 C 1.53000 * 109.47329 * 183.68642 * 22 21 11 25 25 C 1.52998 * 109.47151 * 303.68607 * 22 21 11 26 26 H 1.08997 * 109.47325 * 274.58280 * 1 2 3 27 27 H 1.09003 * 109.46978 * 34.58464 * 1 2 3 28 28 H 1.08998 * 109.47125 * 154.58060 * 1 2 3 29 29 H 1.08001 * 119.93242 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.93848 * 179.97438 * 6 4 3 31 31 H 1.07994 * 120.06991 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46896 * 209.99830 * 12 11 9 33 33 H 1.09000 * 109.47160 * 329.99517 * 12 11 9 34 34 H 0.97007 * 120.00509 * 179.97438 * 16 15 13 35 35 H 1.09007 * 109.47266 * 212.99452 * 21 11 9 36 36 H 1.09000 * 109.47988 * 332.99872 * 21 11 9 37 37 H 1.09003 * 109.46511 * 59.99991 * 23 22 21 38 38 H 1.08999 * 109.47378 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.46862 * 300.00257 * 23 22 21 40 40 H 1.09004 * 109.47416 * 59.99504 * 24 22 21 41 41 H 1.08999 * 109.47591 * 180.02562 * 24 22 21 42 42 H 1.09003 * 109.47213 * 300.00422 * 24 22 21 43 43 H 1.08996 * 109.47038 * 64.01488 * 25 22 21 44 44 H 1.09005 * 109.47146 * 184.01715 * 25 22 21 45 45 H 1.09002 * 109.47017 * 304.01904 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1935 0.0000 4 6 3.5829 1.1951 0.0005 5 17 4.4458 2.7015 -0.0001 6 6 4.2824 -0.0006 0.0016 7 6 3.6027 -1.2002 0.0027 8 6 2.2063 -1.2081 0.0005 9 6 1.4718 -2.4906 0.0068 10 8 0.6411 -2.7193 -0.8508 11 7 1.7229 -3.4064 0.9632 12 6 1.0829 -4.7228 0.9028 13 6 1.9555 -5.6702 0.1205 14 1 2.8928 -5.3260 -0.2909 15 6 1.5572 -6.9764 -0.0699 16 7 0.4156 -7.3953 0.4307 17 14 2.6385 -8.1505 -1.0402 18 1 3.5803 -8.8334 -0.1172 19 1 1.7878 -9.1621 -1.7172 20 1 3.4071 -7.3894 -2.0577 21 6 2.6358 -3.0854 2.0630 22 6 1.8355 -2.5394 3.2473 23 6 0.8930 -3.6254 3.7700 24 6 2.7960 -2.1184 4.3613 25 6 1.0171 -1.3285 2.7949 26 1 -0.3634 0.0821 1.0243 27 1 -0.3633 0.8461 -0.5833 28 1 -0.3633 -0.9282 -0.4411 29 1 1.6580 2.1288 -0.0004 30 1 5.3624 0.0067 0.0016 31 1 4.1491 -2.1317 0.0039 32 1 0.9451 -5.1064 1.9137 33 1 0.1133 -4.6333 0.4129 34 1 0.1351 -8.3142 0.2965 35 1 3.1677 -3.9865 2.3685 36 1 3.3533 -2.3344 1.7324 37 1 1.4761 -4.4881 4.0923 38 1 0.3232 -3.2367 4.6139 39 1 0.2087 -3.9254 2.9763 40 1 3.4675 -1.3447 3.9889 41 1 2.2259 -1.7299 5.2051 42 1 3.3792 -2.9811 4.6835 43 1 0.2838 -1.6425 2.0521 44 1 0.5027 -0.8964 3.6533 45 1 1.6818 -0.5838 2.3569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163997275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:30 Heat of formation + Delta-G solvation = -43.809667 kcal Electronic energy + Delta-G solvation = -26650.068951 eV Core-core repulsion = 23078.358041 eV Total energy + Delta-G solvation = -3571.710910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80526 -39.62533 -38.41188 -37.45116 -35.72414 -34.46485 -33.73405 -32.26909 -29.64111 -28.27332 -28.08516 -28.03931 -26.99684 -25.40020 -23.85622 -22.67291 -20.75942 -19.72461 -18.68707 -18.13888 -17.53428 -17.23154 -17.01183 -16.44249 -15.85256 -15.69165 -15.11251 -14.99336 -14.79431 -14.73722 -14.42080 -14.27269 -14.12005 -13.75470 -13.57736 -13.33552 -13.20581 -13.05665 -13.00043 -12.78503 -12.65710 -12.51151 -12.47249 -12.42903 -12.24431 -12.16748 -11.92888 -11.78505 -11.66234 -11.51594 -11.37410 -10.68825 -10.60446 -9.91082 -9.65362 -9.33383 -8.20989 -6.35422 -0.18387 0.21101 1.06816 1.36059 1.38857 1.48660 1.76215 2.25220 2.40528 2.58035 3.08545 3.55144 3.70133 3.77311 3.89179 3.90324 4.10787 4.11642 4.29534 4.41706 4.50022 4.59260 4.63322 4.70886 4.76882 4.81515 4.82102 4.90834 4.94576 4.99727 5.06650 5.08131 5.12011 5.15290 5.20431 5.22051 5.24524 5.36535 5.45294 5.46594 5.54914 5.60681 5.65882 5.87061 6.08850 6.69496 6.76552 7.26518 7.42715 8.85473 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.004220 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.631122 B = 6633.211217 C = 7269.567076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 C -0.110 4.110 4 C -0.017 4.017 5 Cl -0.056 7.056 6 C -0.110 4.110 7 C -0.082 4.082 8 C -0.123 4.123 9 C 0.550 3.450 10 O -0.589 6.589 11 N -0.582 5.582 12 C 0.259 3.741 13 C -0.544 4.544 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.106 3.894 22 C -0.081 4.081 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.137 4.137 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.041 0.959 33 H -0.007 1.007 34 H 0.266 0.734 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 19.501 6.681 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 C -0.128 4.128 4 C -0.044 4.044 5 Cl -0.027 7.027 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.126 4.126 9 C 0.339 3.661 10 O -0.471 6.471 11 N -0.310 5.310 12 C 0.139 3.861 13 C -0.583 4.583 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.566 5.566 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.016 4.016 22 C -0.082 4.082 23 C -0.198 4.198 24 C -0.186 4.186 25 C -0.194 4.194 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.178 0.822 30 H 0.180 0.820 31 H 0.156 0.844 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.847 19.322 6.284 21.781 hybrid contribution -0.004 -1.295 -0.763 1.503 sum 7.844 18.027 5.522 20.420 Atomic orbital electron populations 1.21102 0.90256 1.04024 1.03595 1.19834 0.96736 0.90790 0.95847 1.21005 0.92092 0.98385 1.01316 1.21117 0.92474 0.87668 1.03114 1.98379 1.76601 1.31032 1.96716 1.21121 1.01655 0.89345 1.00699 1.21258 0.91915 0.99261 0.97652 1.19913 0.94690 0.92646 1.05337 1.18710 0.82131 0.84151 0.81106 1.90702 1.36651 1.79995 1.39738 1.48024 1.45119 1.13972 1.23898 1.18930 0.91981 0.78385 0.96840 1.21738 1.06006 0.95849 1.34712 0.92921 1.25780 0.96500 0.99859 0.96636 1.70044 1.22358 1.17735 1.46425 0.85482 0.78622 0.78275 0.78842 1.18827 1.20791 1.19822 1.22059 0.91932 1.01333 0.86311 1.20944 0.96388 0.95486 0.95408 1.21958 0.99257 0.98249 1.00332 1.21735 0.98434 1.01624 0.96852 1.21997 0.99518 0.96984 1.00932 0.89573 0.88787 0.92629 0.82189 0.81991 0.84426 0.94134 0.98841 0.92478 0.90998 0.88341 0.93192 0.91521 0.94920 0.91408 0.91293 0.92216 0.95100 0.91327 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.82 71.24 0.63 -2.94 16 2 C -0.03 -0.83 4.22 -19.62 -0.08 -0.91 16 3 C -0.11 -2.25 9.48 22.25 0.21 -2.04 16 4 C -0.02 -0.33 6.33 22.40 0.14 -0.19 16 5 Cl -0.06 -0.93 28.95 -2.72 -0.08 -1.01 16 6 C -0.11 -2.20 9.81 22.25 0.22 -1.98 16 7 C -0.08 -2.14 7.48 22.52 0.17 -1.97 16 8 C -0.12 -3.90 3.47 -20.08 -0.07 -3.97 16 9 C 0.55 23.49 4.98 86.77 0.43 23.93 16 10 O -0.59 -31.04 14.66 -3.91 -0.06 -31.10 16 11 N -0.58 -24.67 1.97 -829.63 -1.64 -26.31 16 12 C 0.26 13.85 4.24 85.63 0.36 14.21 16 13 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 14 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.93 -55.76 13.28 21.45 0.28 -55.47 16 17 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.11 3.42 4.43 86.38 0.38 3.80 16 22 C -0.08 -2.20 0.85 -52.18 -0.04 -2.24 16 23 C -0.14 -4.40 7.33 71.98 0.53 -3.87 16 24 C -0.13 -2.54 8.47 71.98 0.61 -1.93 16 25 C -0.14 -3.58 5.97 71.98 0.43 -3.15 16 26 H 0.09 2.05 6.85 -2.39 -0.02 2.03 16 27 H 0.09 1.96 8.12 -2.39 -0.02 1.94 16 28 H 0.05 1.99 5.57 -2.39 -0.01 1.98 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.14 3.59 7.50 -2.91 -0.02 3.57 16 32 H 0.04 2.18 5.65 -2.39 -0.01 2.16 16 33 H -0.01 -0.41 7.35 -2.39 -0.02 -0.43 16 34 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.07 2.44 8.10 -2.38 -0.02 2.42 16 36 H 0.10 2.68 4.38 -2.39 -0.01 2.67 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.03 1.26 5.68 -2.39 -0.01 1.24 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 0.98 5.40 -2.39 -0.01 0.97 16 44 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.06 1.54 5.84 -2.39 -0.01 1.53 16 Total: -1.00 -70.78 361.97 6.15 -64.63 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.99 Total: 15.48 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.62 Total: -13.05 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.35 Total: -81.78 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -70.78 6.15 -64.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163997275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.825 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds