Wall clock time and date at job start Tue Mar 31 2020 14:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99545 * 2 1 4 4 H 1.48500 * 109.46596 * 240.00019 * 3 2 1 5 5 H 1.48504 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47397 * 119.99855 * 3 2 1 7 7 C 1.37871 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46875 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46931 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00126 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99738 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99962 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00207 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47592 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99822 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.39923 * 120.00135 * 175.37783 * 19 17 16 21 21 C 1.38904 * 120.05959 * 214.81954 * 20 19 17 22 22 C 1.38098 * 119.97967 * 179.67534 * 21 20 19 23 23 C 1.38273 * 120.09336 * 0.62397 * 22 21 20 24 24 C 1.38492 * 120.11429 * 359.67490 * 23 22 21 25 25 F 1.35093 * 119.98595 * 180.02562 * 24 23 22 26 26 C 1.38354 * 120.01709 * 0.02562 * 24 23 22 27 27 H 0.97002 * 120.00481 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47379 * 59.99858 * 9 7 2 29 29 H 1.09004 * 109.46879 * 299.99189 * 9 7 2 30 30 H 1.08992 * 109.47798 * 59.99266 * 10 9 7 31 31 H 1.09004 * 109.46467 * 299.99150 * 10 9 7 32 32 H 1.08997 * 109.47469 * 59.99477 * 11 10 9 33 33 H 1.09004 * 109.46808 * 299.99393 * 11 10 9 34 34 H 0.97001 * 119.99446 * 359.97438 * 12 11 10 35 35 H 0.97003 * 120.00377 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.46762 * 300.00070 * 16 15 13 37 37 H 1.09001 * 109.47416 * 59.99049 * 16 15 13 38 38 H 0.96995 * 119.99845 * 355.38495 * 19 17 16 39 39 H 1.07998 * 120.00544 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.95282 * 180.31684 * 22 21 20 41 41 H 1.07996 * 119.93893 * 179.69463 * 23 22 21 42 42 H 1.07996 * 120.04250 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9834 -7.3712 0.0009 14 8 0.7880 -7.5934 0.0000 15 7 2.8593 -8.3955 0.0009 16 6 2.3711 -9.7768 0.0005 17 6 3.5432 -10.7240 0.0000 18 8 4.6750 -10.2881 -0.0005 19 7 3.3338 -12.0554 0.0000 20 6 4.4182 -12.9342 -0.0981 21 6 4.2837 -14.1305 -0.7910 22 6 5.3570 -14.9935 -0.8925 23 6 6.5621 -14.6746 -0.2942 24 6 6.6987 -13.4858 0.4029 25 9 7.8774 -13.1765 0.9860 26 6 5.6283 -12.6148 0.5023 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 2.8715 -3.6038 0.8921 31 1 2.8727 -3.6046 -0.8878 32 1 0.8548 -5.0450 -0.8894 33 1 0.8530 -5.0447 0.8906 34 1 3.3862 -5.9232 0.0021 35 1 3.8130 -8.2183 0.0012 36 1 1.7653 -9.9483 0.8902 37 1 1.7656 -9.9480 -0.8897 38 1 2.4313 -12.4043 0.0680 39 1 3.3415 -14.3833 -1.2544 40 1 5.2535 -15.9212 -1.4358 41 1 7.3984 -15.3537 -0.3710 42 1 5.7344 -11.6875 1.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:30 Heat of formation + Delta-G solvation = -91.844344 kcal Electronic energy + Delta-G solvation = -25009.393118 eV Core-core repulsion = 20903.722550 eV Total energy + Delta-G solvation = -4105.670568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.28918 -41.24314 -39.85026 -38.82514 -35.64653 -35.38991 -34.47944 -33.29584 -31.36666 -31.11734 -30.47263 -28.09795 -26.28445 -23.84896 -23.18280 -22.78443 -21.19639 -20.89740 -20.41544 -19.04659 -18.50374 -17.23568 -16.94520 -16.67413 -16.64581 -16.23720 -16.07008 -15.94472 -15.72908 -15.31409 -14.76296 -14.45568 -14.30780 -14.12478 -13.99174 -13.71999 -13.53281 -13.20048 -12.81960 -12.48286 -12.26656 -12.08757 -11.81026 -11.70572 -11.01641 -10.87557 -10.71883 -10.61878 -10.49173 -10.22625 -9.84901 -9.44359 -9.40030 -9.33447 -9.12875 -8.84106 -8.66400 -8.35760 -6.00627 -4.03725 0.52601 0.68431 1.87624 2.09367 2.85374 3.07164 3.26841 3.33238 3.37849 3.40013 3.74451 4.00170 4.27469 4.35007 4.46411 4.46888 4.54565 4.77752 4.87873 4.91785 4.96323 5.35061 5.42665 5.53153 5.67339 5.68795 5.70351 5.80136 5.81315 6.13322 6.20549 6.38841 6.50261 6.62707 6.64647 6.77229 7.01233 7.03231 7.36872 7.64561 7.77505 7.98068 8.06944 8.39081 8.65001 9.02668 9.60364 11.10541 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.001588 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.180983 B =17626.498034 C =18478.527424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.135 3.865 12 N -0.738 5.738 13 C 0.705 3.295 14 O -0.594 6.594 15 N -0.743 5.743 16 C 0.125 3.875 17 C 0.512 3.488 18 O -0.511 6.511 19 N -0.670 5.670 20 C 0.175 3.825 21 C -0.154 4.154 22 C -0.071 4.071 23 C -0.170 4.170 24 C 0.118 3.882 25 F -0.135 7.135 26 C -0.159 4.159 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.407 0.593 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.419 0.581 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.447 -34.299 -0.808 35.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.392 5.392 13 C 0.404 3.596 14 O -0.472 6.472 15 N -0.404 5.404 16 C -0.003 4.003 17 C 0.300 3.700 18 O -0.385 6.385 19 N -0.316 5.316 20 C 0.080 3.920 21 C -0.175 4.175 22 C -0.090 4.090 23 C -0.189 4.189 24 C 0.099 3.901 25 F -0.114 7.114 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.256 0.744 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.972 -33.943 -0.793 35.118 hybrid contribution 1.107 0.951 0.110 1.463 sum 10.079 -32.992 -0.683 34.504 Atomic orbital electron populations 1.69956 1.06038 1.26779 1.50492 1.25023 0.94860 0.99271 0.95269 0.86639 0.79552 0.83095 0.78580 1.20268 1.21275 1.20261 1.21174 0.92979 0.90965 1.51044 0.92690 1.19027 0.93845 0.90780 0.97701 1.21905 0.99827 0.93267 1.00944 1.21549 0.91238 0.84046 1.01973 1.45364 1.10732 1.04218 1.78846 1.15861 0.84962 0.80746 0.77984 1.90927 1.13982 1.84163 1.58148 1.44741 1.10279 1.03550 1.81823 1.20763 0.93341 0.80853 1.05351 1.20931 0.91393 0.82638 0.75088 1.90736 1.24019 1.76687 1.47085 1.43376 1.09655 1.05390 1.73181 1.17393 0.87890 0.90506 0.96202 1.21000 1.00679 0.94694 1.01122 1.20809 0.91360 0.99245 0.97589 1.21191 0.99838 0.96776 1.01129 1.17512 0.81701 0.94665 0.96264 1.91526 1.44679 1.93113 1.82079 1.21247 0.92157 1.01735 1.02845 0.92888 0.96215 0.96223 0.92688 0.92702 0.91831 0.91822 0.77043 0.75601 0.87953 0.87916 0.74393 0.84724 0.84396 0.84545 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 12 N -0.74 -10.71 5.56 -65.23 -0.36 -11.07 16 13 C 0.70 10.43 8.57 -86.93 -0.74 9.69 16 14 O -0.59 -10.91 16.34 5.29 0.09 -10.83 16 15 N -0.74 -8.11 5.53 -66.42 -0.37 -8.48 16 16 C 0.13 0.99 6.16 -5.19 -0.03 0.96 16 17 C 0.51 4.01 7.74 -10.99 -0.09 3.92 16 18 O -0.51 -5.69 13.10 5.55 0.07 -5.62 16 19 N -0.67 -3.52 5.34 -9.87 -0.05 -3.58 16 20 C 0.17 1.20 6.30 -83.71 -0.53 0.67 16 21 C -0.15 -0.74 9.96 -39.39 -0.39 -1.13 16 22 C -0.07 -0.33 10.04 -39.62 -0.40 -0.72 16 23 C -0.17 -1.05 10.02 -39.47 -0.40 -1.44 16 24 C 0.12 1.02 7.30 -39.45 -0.29 0.73 16 25 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 26 C -0.16 -1.42 8.68 -39.33 -0.34 -1.76 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.40 4.74 8.49 -40.82 -0.35 4.39 16 35 H 0.41 4.11 7.45 -40.82 -0.30 3.80 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.42 0.74 8.82 -40.82 -0.36 0.38 16 39 H 0.13 0.31 8.06 -52.49 -0.42 -0.12 16 40 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.15 1.59 6.22 -52.49 -0.33 1.26 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -35.66 368.87 -8.76 -44.42 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.53 Total: 2.64 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.92 Total: -2.21 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.05 Total: -49.20 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.16 Total: -16.44 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.66 -8.76 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.429 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds