Wall clock time and date at job start Tue Mar 31 2020 13:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47283 * 262.72394 * 3 2 1 5 5 N 1.46498 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99917 * 91.07896 * 5 4 3 7 7 C 1.50708 * 109.47057 * 89.99949 * 6 5 4 8 8 H 1.07994 * 119.99794 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99814 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00186 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00355 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46924 * 89.99970 * 11 9 7 13 13 H 1.48500 * 109.47068 * 209.99627 * 11 9 7 14 14 H 1.48499 * 109.47286 * 329.99881 * 11 9 7 15 15 C 1.34776 * 120.00023 * 271.08216 * 5 4 3 16 16 O 1.21715 * 119.99648 * 186.14503 * 15 5 4 17 17 C 1.46579 * 119.99999 * 6.14591 * 15 5 4 18 18 C 1.38057 * 126.00489 * 188.02165 * 17 15 5 19 19 C 1.39360 * 107.44197 * 179.97438 * 18 17 15 20 20 C 1.37823 * 107.65609 * 0.02562 * 19 18 17 21 21 C 1.47806 * 125.82822 * 179.97438 * 20 19 18 22 22 C 1.39594 * 120.14802 * 179.74631 * 21 20 19 23 23 C 1.37956 * 119.84846 * 179.77020 * 22 21 20 24 24 C 1.38361 * 120.14622 * 0.51393 * 23 22 21 25 25 C 1.38368 * 120.29761 * 359.74188 * 24 23 22 26 26 C 1.37957 * 120.14450 * 359.97438 * 25 24 23 27 27 N 1.36410 * 108.34762 * 359.73644 * 20 19 18 28 28 H 0.97001 * 125.71893 * 180.29946 * 27 20 19 29 29 H 1.09005 * 109.46626 * 142.72864 * 3 2 1 30 30 H 1.08997 * 109.47533 * 22.73556 * 3 2 1 31 31 H 1.08994 * 109.47284 * 300.00962 * 4 3 2 32 32 H 1.09005 * 109.46907 * 60.00641 * 4 3 2 33 33 H 1.09001 * 109.47231 * 210.00073 * 6 5 4 34 34 H 1.08996 * 109.47246 * 330.00194 * 6 5 4 35 35 H 0.96989 * 120.00847 * 180.02562 * 10 9 7 36 36 H 1.08004 * 126.28067 * 359.96507 * 18 17 15 37 37 H 1.08000 * 126.17016 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.07240 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.92155 * 180.25482 * 23 22 21 40 40 H 1.07997 * 119.85189 * 179.76552 * 24 23 22 41 41 H 1.08001 * 119.92407 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.06834 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.1836 1.4308 5 7 4.5829 0.1848 1.4308 6 6 5.3143 1.4468 1.2940 7 6 5.5650 2.0327 2.6597 8 1 5.2149 1.5164 3.5412 9 6 6.2422 3.2272 2.7835 10 7 6.4614 3.7384 3.9753 11 14 6.8483 4.1199 1.2587 12 1 5.7959 5.0518 0.7795 13 1 8.0758 4.8874 1.5895 14 1 7.1549 3.1303 0.1948 15 6 5.2578 -0.9750 1.5565 16 8 6.4697 -0.9647 1.6689 17 6 4.5323 -2.2486 1.5578 18 6 5.0717 -3.4896 1.8320 19 6 4.0439 -4.4246 1.7251 20 6 2.8936 -3.7447 1.3874 21 6 1.5625 -4.3499 1.1719 22 6 0.4722 -3.5450 0.8371 23 6 -0.7664 -4.1170 0.6326 24 6 -0.9317 -5.4839 0.7692 25 6 0.1437 -6.2868 1.1061 26 6 1.3890 -5.7284 1.3076 27 7 3.1921 -2.4171 1.2912 28 1 2.5655 -1.7103 1.0703 29 1 2.9709 0.8187 -0.6224 30 1 2.9718 -0.9469 -0.3971 31 1 2.7541 1.1312 1.8279 32 1 2.7550 -0.6344 2.0532 33 1 6.2668 1.2627 0.7971 34 1 4.7246 2.1461 0.7013 35 1 6.9375 4.5789 4.0626 36 1 6.1013 -3.6976 2.0832 37 1 4.1329 -5.4900 1.8784 38 1 0.5991 -2.4774 0.7343 39 1 -1.6098 -3.4958 0.3695 40 1 -1.9043 -5.9261 0.6118 41 1 0.0080 -7.3531 1.2107 42 1 2.2276 -6.3563 1.5701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171763315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:10 Heat of formation + Delta-G solvation = 92.036154 kcal Electronic energy + Delta-G solvation = -26458.000072 eV Core-core repulsion = 22791.072385 eV Total energy + Delta-G solvation = -3666.927687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65655 -39.31948 -38.51508 -37.36758 -35.68211 -33.07535 -32.17953 -31.81497 -31.28288 -30.52397 -28.92799 -27.39973 -24.57792 -23.72416 -22.99573 -22.46421 -20.93159 -20.32003 -19.58870 -18.21669 -17.65631 -16.94348 -16.71991 -16.19166 -15.62328 -15.39987 -15.06442 -14.87472 -14.55370 -14.23333 -13.99775 -13.77184 -13.67844 -13.59646 -13.32011 -12.90007 -12.81747 -12.68549 -12.58517 -12.53222 -12.26185 -12.13087 -11.78910 -11.54068 -11.37144 -11.25049 -11.05966 -10.66084 -10.24978 -9.70342 -9.63350 -9.45051 -9.24637 -9.01752 -8.67471 -8.14091 -7.66259 -6.15884 -4.16459 0.62533 1.12078 1.83813 2.35465 2.40428 2.76457 2.96211 3.20091 3.23128 3.31260 3.33444 3.63186 3.67105 3.88997 4.31818 4.41979 4.48644 4.55597 4.62637 4.67231 4.81308 4.84904 4.93757 5.12076 5.16071 5.21382 5.29821 5.38914 5.39967 5.60875 5.70154 5.73454 5.95249 6.06519 6.20500 6.21743 6.23353 6.44734 6.66396 6.72744 6.81055 6.90627 7.03237 7.16636 7.25602 7.48325 7.88281 8.35369 8.65495 8.88109 9.42380 10.97295 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.003469 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.272484 B = 8070.259176 C = 9145.770598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.198 3.802 3 C -0.076 4.076 4 C 0.098 3.902 5 N -0.590 5.590 6 C 0.216 3.784 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.580 3.420 16 O -0.509 6.509 17 C -0.026 4.026 18 C -0.111 4.111 19 C -0.178 4.178 20 C 0.059 3.941 21 C -0.013 4.013 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.101 4.101 27 N -0.545 5.545 28 H 0.418 0.582 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.030 0.970 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -17.207 -8.838 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.121 4.121 3 C -0.118 4.118 4 C -0.029 4.029 5 N -0.321 5.321 6 C 0.096 3.904 7 C -0.572 4.572 8 H 0.095 0.905 9 C -0.129 4.129 10 N -0.531 5.531 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.367 3.633 16 O -0.383 6.383 17 C -0.141 4.141 18 C -0.137 4.137 19 C -0.202 4.202 20 C -0.056 4.056 21 C -0.014 4.014 22 C -0.143 4.143 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.131 4.131 26 C -0.120 4.120 27 N -0.151 5.151 28 H 0.267 0.733 29 H 0.151 0.849 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.300 -16.808 -8.717 23.138 hybrid contribution 0.357 1.076 -0.734 1.350 sum -12.943 -15.732 -9.451 22.457 Atomic orbital electron populations 1.81260 1.12381 1.07984 1.07531 1.28971 0.95013 0.93960 0.94135 1.20262 0.82090 1.07060 1.02357 1.21714 0.83057 1.05683 0.92477 1.47819 1.04204 1.08397 1.71716 1.19807 0.92522 0.79427 0.98596 1.21280 1.37601 1.06363 0.91986 0.90519 1.24851 0.95112 0.96974 0.95919 1.69882 1.41096 1.19837 1.22301 0.86898 0.79060 0.80272 0.83812 1.20078 1.20850 1.18698 1.17015 0.86897 0.81601 0.77736 1.90859 1.12684 1.86097 1.48642 1.20881 0.82833 0.96456 1.13883 1.21224 0.99886 0.89805 1.02795 1.21071 0.91088 0.99374 1.08686 1.19175 0.94064 0.83495 1.08866 1.18121 0.89830 0.93502 0.99914 1.21107 0.93021 0.98977 1.01191 1.21044 0.96950 0.95259 0.99381 1.21229 0.99062 0.93715 1.00211 1.21101 0.92577 0.99999 0.99380 1.21119 0.97838 0.93249 0.99798 1.43554 1.09428 1.07985 1.54182 0.73331 0.84871 0.87287 0.86965 0.90297 0.93496 0.95169 0.92422 0.83011 0.83744 0.87366 0.85824 0.85912 0.85554 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.33 18.33 42.15 0.77 -4.56 16 2 C 0.20 2.17 13.85 -20.76 -0.29 1.88 16 3 C -0.08 -0.77 5.06 -29.52 -0.15 -0.92 16 4 C 0.10 1.32 4.85 -4.04 -0.02 1.30 16 5 N -0.59 -10.76 2.46 -176.64 -0.43 -11.19 16 6 C 0.22 4.71 4.18 -5.19 -0.02 4.69 16 7 C -0.53 -14.39 9.94 -34.44 -0.34 -14.73 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 11 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 15 C 0.58 11.20 7.62 -12.90 -0.10 11.11 16 16 O -0.51 -11.87 16.53 5.17 0.09 -11.78 16 17 C -0.03 -0.42 6.57 -81.94 -0.54 -0.96 16 18 C -0.11 -1.61 10.61 -39.23 -0.42 -2.02 16 19 C -0.18 -2.15 10.22 -39.32 -0.40 -2.56 16 20 C 0.06 0.74 6.93 -82.07 -0.57 0.17 16 21 C -0.01 -0.14 5.87 -104.97 -0.62 -0.76 16 22 C -0.12 -1.38 9.70 -39.18 -0.38 -1.76 16 23 C -0.11 -1.05 10.03 -39.64 -0.40 -1.45 16 24 C -0.12 -1.03 10.04 -39.49 -0.40 -1.43 16 25 C -0.11 -0.91 10.03 -39.64 -0.40 -1.30 16 26 C -0.10 -0.94 9.56 -39.18 -0.37 -1.31 16 27 N -0.55 -7.13 4.12 -5.81 -0.02 -7.16 16 28 H 0.42 4.90 2.02 -40.82 -0.08 4.82 16 29 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.11 1.04 6.47 -51.93 -0.34 0.70 16 31 H 0.11 1.53 8.06 -51.93 -0.42 1.11 16 32 H 0.08 1.03 5.22 -51.93 -0.27 0.76 16 33 H 0.05 1.10 6.57 -51.93 -0.34 0.76 16 34 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.14 1.33 7.26 -52.49 -0.38 0.95 16 38 H 0.11 1.21 5.81 -52.49 -0.30 0.90 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.97 6.98 -52.48 -0.37 0.60 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -33.51 356.79 -8.22 -41.73 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.59 Total: 5.96 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -5.50 Total: -8.08 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 1.09 Total: -48.77 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.51 -8.22 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171763315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.762 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds