Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47283 * 262.72394 * 3 2 1 5 5 N 1.46498 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99917 * 91.07896 * 5 4 3 7 7 C 1.50708 * 109.47057 * 89.99949 * 6 5 4 8 8 H 1.07994 * 119.99794 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99814 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00186 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00355 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.46924 * 89.99970 * 11 9 7 13 13 H 1.48500 * 109.47068 * 209.99627 * 11 9 7 14 14 H 1.48499 * 109.47286 * 329.99881 * 11 9 7 15 15 C 1.34776 * 120.00023 * 271.08216 * 5 4 3 16 16 O 1.21715 * 119.99648 * 186.14503 * 15 5 4 17 17 C 1.46579 * 119.99999 * 6.14591 * 15 5 4 18 18 C 1.38057 * 126.00489 * 188.02165 * 17 15 5 19 19 C 1.39360 * 107.44197 * 179.97438 * 18 17 15 20 20 C 1.37823 * 107.65609 * 0.02562 * 19 18 17 21 21 C 1.47806 * 125.82822 * 179.97438 * 20 19 18 22 22 C 1.39594 * 120.14802 * 179.74631 * 21 20 19 23 23 C 1.37956 * 119.84846 * 179.77020 * 22 21 20 24 24 C 1.38361 * 120.14622 * 0.51393 * 23 22 21 25 25 C 1.38368 * 120.29761 * 359.74188 * 24 23 22 26 26 C 1.37957 * 120.14450 * 359.97438 * 25 24 23 27 27 N 1.36410 * 108.34762 * 359.73644 * 20 19 18 28 28 H 0.97001 * 125.71893 * 180.29946 * 27 20 19 29 29 H 1.09005 * 109.46626 * 142.72864 * 3 2 1 30 30 H 1.08997 * 109.47533 * 22.73556 * 3 2 1 31 31 H 1.08994 * 109.47284 * 300.00962 * 4 3 2 32 32 H 1.09005 * 109.46907 * 60.00641 * 4 3 2 33 33 H 1.09001 * 109.47231 * 210.00073 * 6 5 4 34 34 H 1.08996 * 109.47246 * 330.00194 * 6 5 4 35 35 H 0.96989 * 120.00847 * 180.02562 * 10 9 7 36 36 H 1.08004 * 126.28067 * 359.96507 * 18 17 15 37 37 H 1.08000 * 126.17016 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.07240 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.92155 * 180.25482 * 23 22 21 40 40 H 1.07997 * 119.85189 * 179.76552 * 24 23 22 41 41 H 1.08001 * 119.92407 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.06834 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.1836 1.4308 5 7 4.5829 0.1848 1.4308 6 6 5.3143 1.4468 1.2940 7 6 5.5650 2.0327 2.6597 8 1 5.2149 1.5164 3.5412 9 6 6.2422 3.2272 2.7835 10 7 6.4614 3.7384 3.9753 11 14 6.8483 4.1199 1.2587 12 1 5.7959 5.0518 0.7795 13 1 8.0758 4.8874 1.5895 14 1 7.1549 3.1303 0.1948 15 6 5.2578 -0.9750 1.5565 16 8 6.4697 -0.9647 1.6689 17 6 4.5323 -2.2486 1.5578 18 6 5.0717 -3.4896 1.8320 19 6 4.0439 -4.4246 1.7251 20 6 2.8936 -3.7447 1.3874 21 6 1.5625 -4.3499 1.1719 22 6 0.4722 -3.5450 0.8371 23 6 -0.7664 -4.1170 0.6326 24 6 -0.9317 -5.4839 0.7692 25 6 0.1437 -6.2868 1.1061 26 6 1.3890 -5.7284 1.3076 27 7 3.1921 -2.4171 1.2912 28 1 2.5655 -1.7103 1.0703 29 1 2.9709 0.8187 -0.6224 30 1 2.9718 -0.9469 -0.3971 31 1 2.7541 1.1312 1.8279 32 1 2.7550 -0.6344 2.0532 33 1 6.2668 1.2627 0.7971 34 1 4.7246 2.1461 0.7013 35 1 6.9375 4.5789 4.0626 36 1 6.1013 -3.6976 2.0832 37 1 4.1329 -5.4900 1.8784 38 1 0.5991 -2.4774 0.7343 39 1 -1.6098 -3.4958 0.3695 40 1 -1.9043 -5.9261 0.6118 41 1 0.0080 -7.3531 1.2107 42 1 2.2276 -6.3563 1.5701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171763315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 72.742911 kcal Electronic energy + Delta-G solvation = -26458.836690 eV Core-core repulsion = 22791.072385 eV Total energy + Delta-G solvation = -3667.764305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.75543 -40.43656 -39.51217 -38.47084 -37.00898 -34.95281 -33.19206 -33.01628 -32.19097 -31.44499 -30.42683 -28.72218 -25.72871 -25.19084 -23.84366 -23.56072 -21.92710 -21.62680 -20.63303 -19.39175 -18.97257 -18.58265 -17.83094 -17.31900 -16.80731 -16.38000 -16.37101 -15.97525 -15.70904 -15.45004 -15.15733 -14.83836 -14.69117 -14.60097 -14.43471 -14.37929 -13.92786 -13.71568 -13.69794 -13.63034 -13.45663 -13.38010 -13.21744 -12.88596 -12.44406 -12.34217 -12.22789 -12.00952 -11.93647 -11.73678 -11.06492 -10.77927 -10.47478 -10.07798 -9.93696 -9.70780 -8.67041 -8.29414 -6.35686 -0.23838 0.42904 0.73248 1.37379 1.38808 1.43572 1.50476 1.52669 1.78976 1.87000 2.03710 2.35639 2.36144 2.77661 2.93113 3.05460 3.42604 3.55343 3.61417 3.62839 3.85519 3.97626 4.00306 4.23627 4.25913 4.38059 4.45179 4.50896 4.56091 4.65206 4.76844 4.84914 4.94743 5.01961 5.08844 5.14525 5.36195 5.43626 5.48530 5.49512 5.56723 5.77601 5.85450 5.99840 6.21296 6.25339 6.27476 6.44184 6.67277 7.13484 7.30086 8.87745 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.003469 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.272484 B = 8070.259176 C = 9145.770598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.219 3.781 3 C -0.062 4.062 4 C 0.094 3.906 5 N -0.593 5.593 6 C 0.223 3.777 7 C -0.538 4.538 8 H 0.026 0.974 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.948 3.052 12 H -0.251 1.251 13 H -0.289 1.289 14 H -0.244 1.244 15 C 0.577 3.423 16 O -0.564 6.564 17 C -0.058 4.058 18 C -0.112 4.112 19 C -0.178 4.178 20 C 0.075 3.925 21 C -0.038 4.038 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.112 4.112 26 C -0.100 4.100 27 N -0.539 5.539 28 H 0.422 0.578 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -19.174 -11.249 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.032 4.032 5 N -0.322 5.322 6 C 0.102 3.898 7 C -0.577 4.577 8 H 0.044 0.956 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.770 3.230 12 H -0.175 1.175 13 H -0.215 1.215 14 H -0.167 1.167 15 C 0.367 3.633 16 O -0.443 6.443 17 C -0.171 4.171 18 C -0.139 4.139 19 C -0.202 4.202 20 C -0.042 4.042 21 C -0.039 4.039 22 C -0.157 4.157 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.130 4.130 26 C -0.118 4.118 27 N -0.146 5.146 28 H 0.271 0.729 29 H 0.176 0.824 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.195 0.805 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.399 -18.786 -11.145 26.725 hybrid contribution 0.818 1.495 0.126 1.709 sum -14.580 -17.291 -11.019 25.159 Atomic orbital electron populations 1.81288 1.13240 1.09129 1.08325 1.28881 0.94774 0.92957 0.93272 1.20135 0.81390 1.08715 1.00125 1.21862 0.80326 1.05920 0.95045 1.47736 1.05987 1.07110 1.71402 1.19554 0.93283 0.81291 0.95687 1.21556 1.37030 1.06159 0.92953 0.95588 1.25889 0.95242 0.98072 0.99616 1.70063 1.42765 1.20702 1.25306 0.85716 0.78607 0.79211 0.79474 1.17480 1.21501 1.16729 1.17484 0.86539 0.82818 0.76494 1.90808 1.15000 1.87057 1.51458 1.20331 0.84041 0.95140 1.17634 1.21434 1.00496 0.90024 1.01940 1.21385 0.89902 1.00594 1.08305 1.19598 0.94952 0.83010 1.06613 1.18200 0.88995 0.94556 1.02117 1.21190 0.93805 0.98839 1.01905 1.21245 0.96675 0.96331 0.99811 1.21615 1.00465 0.93121 0.98410 1.21497 0.91799 1.01580 0.98082 1.21446 0.99202 0.92505 0.98684 1.43443 1.08419 1.08650 1.54075 0.72851 0.82408 0.86190 0.87059 0.90012 0.94844 0.91453 0.92381 0.83214 0.80526 0.88137 0.85159 0.83349 0.82486 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.84 18.33 20.01 0.37 -10.47 16 2 C 0.22 4.46 13.85 89.44 1.24 5.70 16 3 C -0.06 -1.15 5.06 28.79 0.15 -1.01 16 4 C 0.09 2.52 4.85 86.38 0.42 2.93 16 5 N -0.59 -21.96 2.46 -830.98 -2.04 -24.00 16 6 C 0.22 9.75 4.18 85.64 0.36 10.11 16 7 C -0.54 -30.16 9.94 25.60 0.25 -29.90 16 8 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 9 C 0.01 0.55 5.47 84.65 0.46 1.01 16 10 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 11 Si 0.95 41.75 27.47 68.60 1.88 43.63 16 12 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 15 C 0.58 23.11 7.62 86.42 0.66 23.77 16 16 O -0.56 -27.78 16.53 -4.40 -0.07 -27.85 16 17 C -0.06 -1.87 6.57 40.36 0.27 -1.60 16 18 C -0.11 -3.24 10.61 22.50 0.24 -3.00 16 19 C -0.18 -4.00 10.22 22.44 0.23 -3.77 16 20 C 0.07 1.75 6.93 40.87 0.28 2.03 16 21 C -0.04 -0.76 5.87 -20.09 -0.12 -0.88 16 22 C -0.14 -2.85 9.70 22.53 0.22 -2.63 16 23 C -0.12 -2.11 10.03 22.23 0.22 -1.89 16 24 C -0.12 -1.55 10.04 22.33 0.22 -1.33 16 25 C -0.11 -1.35 10.03 22.23 0.22 -1.12 16 26 C -0.10 -1.51 9.56 22.53 0.22 -1.29 16 27 N -0.54 -13.78 4.12 -172.31 -0.71 -14.49 16 28 H 0.42 9.58 2.02 -92.71 -0.19 9.40 16 29 H 0.16 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.12 2.07 6.47 -2.39 -0.02 2.05 16 31 H 0.11 3.00 8.06 -2.39 -0.02 2.98 16 32 H 0.08 2.15 5.22 -2.38 -0.01 2.13 16 33 H 0.03 1.57 6.57 -2.39 -0.02 1.56 16 34 H 0.07 2.46 7.50 -2.39 -0.02 2.45 16 35 H 0.27 15.47 8.31 -92.72 -0.77 14.69 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.18 2.68 7.26 -2.91 -0.02 2.66 16 38 H 0.10 2.14 5.81 -2.91 -0.02 2.12 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.15 1.60 6.98 -2.91 -0.02 1.58 16 Total: -1.00 -77.89 356.79 6.10 -71.80 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.83 Total: 22.84 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.54 Total: -2.88 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -2.09 Total: -107.54 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.07 Total: -27.85 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Total: -77.89 6.10 -71.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171763315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.541 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds