Wall clock time and date at job start Tue Mar 31 2020 14:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48500 * 109.47057 * 240.00154 * 3 2 1 5 5 H 1.48504 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47231 * 119.99960 * 3 2 1 7 7 C 1.38654 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00007 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00278 * 185.05848 * 9 7 2 11 11 C 1.38876 * 120.06427 * 354.46050 * 10 9 7 12 12 C 1.38105 * 119.92629 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06970 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93183 * 179.97438 * 13 12 11 15 15 N 1.46907 * 109.47001 * 89.99604 * 14 13 12 16 16 C 1.46906 * 110.99652 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46693 * 179.97438 * 16 15 14 18 18 C 1.35103 * 126.40651 * 95.00402 * 17 16 15 19 19 N 1.33516 * 108.62762 * 179.97438 * 18 17 16 20 20 C 1.32558 * 109.15684 * 0.02562 * 19 18 17 21 21 C 1.40928 * 132.32559 * 180.02562 * 20 19 18 22 22 C 1.36032 * 119.32748 * 180.02562 * 21 20 19 23 23 C 1.40473 * 119.68884 * 359.73041 * 22 21 20 24 24 C 1.34949 * 120.30164 * 0.54169 * 23 22 21 25 25 N 1.36484 * 120.60973 * 359.45529 * 24 23 22 26 26 C 1.38305 * 120.14113 * 0.24908 * 13 12 11 27 27 C 1.38107 * 120.06352 * 359.45473 * 26 13 12 28 28 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03982 * 0.02562 * 11 10 9 30 30 H 1.07999 * 119.96027 * 180.02562 * 12 11 10 31 31 H 1.09000 * 109.46838 * 329.99998 * 14 13 12 32 32 H 1.08998 * 109.47106 * 209.99427 * 14 13 12 33 33 H 1.00903 * 110.99811 * 56.05144 * 15 14 13 34 34 H 1.09000 * 109.46749 * 60.00496 * 16 15 14 35 35 H 1.08996 * 109.46904 * 300.00358 * 16 15 14 36 36 H 1.08001 * 125.68952 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.33912 * 359.97279 * 21 20 19 38 38 H 1.08002 * 120.15110 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.84870 * 180.27143 * 23 22 21 40 40 H 1.07999 * 119.69572 * 179.72905 * 24 23 22 41 41 H 1.07992 * 119.96895 * 179.70748 * 26 13 12 42 42 H 1.07999 * 120.03236 * 180.27117 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0952 12 6 4.2022 -4.5972 0.2039 13 6 3.5684 -5.8204 0.3246 14 6 4.3845 -7.0818 0.4424 15 7 4.6560 -7.3588 1.8594 16 6 5.4509 -8.5846 2.0132 17 6 5.7093 -8.8353 3.4765 18 6 4.9847 -9.6301 4.2941 19 7 5.5263 -9.5940 5.5139 20 6 6.5824 -8.7931 5.4975 21 6 7.4978 -8.4090 6.4978 22 6 8.5067 -7.5521 6.1843 23 6 8.6254 -7.0679 4.8710 24 6 7.7379 -7.4405 3.9251 25 7 6.7210 -8.2996 4.2261 26 6 2.1871 -5.8892 0.3316 27 6 1.4364 -4.7345 0.2294 28 1 -0.4850 0.8401 -0.0004 29 1 3.9526 -2.4846 0.0006 30 1 5.2810 -4.5471 0.1947 31 1 5.3271 -6.9557 -0.0902 32 1 3.8308 -7.9146 0.0090 33 1 3.7980 -7.4160 2.3874 34 1 6.4009 -8.4693 1.4914 35 1 4.9042 -9.4276 1.5907 36 1 4.1131 -10.2003 4.0084 37 1 7.3988 -8.7904 7.5033 38 1 9.2159 -7.2493 6.9404 39 1 9.4280 -6.3910 4.6181 40 1 7.8359 -7.0589 2.9195 41 1 1.6950 -6.8463 0.4213 42 1 0.3578 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171769110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:51 Heat of formation + Delta-G solvation = 70.912997 kcal Electronic energy + Delta-G solvation = -25031.408197 eV Core-core repulsion = 21363.564541 eV Total energy + Delta-G solvation = -3667.843656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.74028 -40.78313 -38.74653 -38.26438 -36.73991 -34.56858 -34.24712 -32.08784 -31.75813 -31.00270 -29.74996 -27.60037 -26.55278 -24.75674 -24.30992 -23.61253 -23.33238 -22.03245 -21.84235 -19.83511 -18.85303 -18.41941 -17.70399 -16.98058 -16.94559 -16.60923 -16.44013 -16.13010 -15.87927 -15.62744 -15.45248 -15.32011 -14.97174 -14.77189 -14.48983 -14.31528 -14.01692 -13.58895 -13.44538 -13.15324 -12.94253 -12.82981 -12.76648 -12.53835 -12.37816 -12.30275 -12.15045 -12.07205 -11.84162 -11.17486 -11.07155 -10.79242 -9.78557 -9.76290 -9.40496 -8.91526 -8.69629 -8.47551 -6.15870 -0.10288 0.31179 0.61647 0.69630 1.34141 1.45019 1.50696 1.68026 1.88001 2.17576 2.62213 2.79930 3.12026 3.33346 3.52410 3.53895 3.64258 3.76943 4.03132 4.05955 4.09393 4.15546 4.20595 4.23135 4.36383 4.52428 4.60472 4.61403 4.66398 4.75139 4.76327 4.84379 5.08273 5.10664 5.15879 5.21029 5.30420 5.31642 5.57361 5.63704 5.66497 5.72691 5.82094 6.02477 6.03733 6.16294 6.26003 6.37338 6.88228 6.97119 7.78511 8.75646 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015292 B = 0.002374 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.545380 B =11789.921804 C =12806.152369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.049 4.049 13 C -0.158 4.158 14 C 0.124 3.876 15 N -0.695 5.695 16 C 0.145 3.855 17 C -0.068 4.068 18 C 0.021 3.979 19 N -0.538 5.538 20 C 0.198 3.802 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.142 4.142 24 C 0.048 3.952 25 N -0.355 5.355 26 C -0.059 4.059 27 C -0.208 4.208 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.342 0.658 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.194 0.806 37 H 0.158 0.842 38 H 0.176 0.824 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.147 0.853 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.303 -17.614 6.747 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.265 4.265 12 C -0.067 4.067 13 C -0.159 4.159 14 C -0.003 4.003 15 N -0.327 5.327 16 C 0.016 3.984 17 C -0.182 4.182 18 C -0.131 4.131 19 N -0.259 5.259 20 C -0.045 4.045 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.163 4.163 24 C -0.074 4.074 25 N -0.026 5.026 26 C -0.078 4.078 27 C -0.227 4.227 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.211 0.789 37 H 0.176 0.824 38 H 0.193 0.807 39 H 0.201 0.799 40 H 0.196 0.804 41 H 0.165 0.835 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.125 -17.471 7.338 27.642 hybrid contribution -0.848 0.776 -0.812 1.408 sum 19.277 -16.694 6.526 26.322 Atomic orbital electron populations 1.70181 1.08059 1.28863 1.48922 1.26605 0.96854 1.02784 0.95861 0.84657 0.77413 0.74243 0.79962 1.18002 1.19620 1.18208 1.21781 0.92494 0.81492 1.53268 0.88158 1.83940 1.36026 1.12638 1.81475 1.19980 0.91721 0.87965 0.94175 1.21265 0.93037 1.00141 1.12046 1.20918 0.99687 0.90868 0.95274 1.19638 0.93152 0.95247 1.07899 1.20627 0.98697 0.92622 0.88393 1.60588 1.25129 1.36433 1.10535 1.20225 0.99429 0.92037 0.86721 1.21355 0.94421 1.05559 0.96831 1.22703 1.01147 1.00882 0.88343 1.70688 1.09339 1.21943 1.23924 1.21442 0.98379 0.98805 0.85909 1.20576 0.93839 1.00491 0.98271 1.21522 0.97186 0.94529 0.97555 1.21342 1.00298 1.02166 0.92445 1.22178 0.88294 0.93758 1.03188 1.42807 1.19746 1.29604 1.10448 1.20921 0.93530 0.96789 0.96549 1.20455 0.99872 0.90735 1.11649 0.91843 0.86604 0.84445 0.89318 0.92726 0.83944 0.89243 0.90566 0.78864 0.82413 0.80681 0.79902 0.80394 0.83502 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.21 13.67 21.61 0.30 -56.91 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.04 29.55 68.60 2.03 45.07 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -14.28 9.76 -22.80 -0.22 -14.51 16 10 C 0.11 5.61 6.65 22.58 0.15 5.76 16 11 C -0.25 -10.67 9.17 22.39 0.21 -10.47 16 12 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 13 C -0.16 -4.58 5.40 -19.83 -0.11 -4.69 16 14 C 0.12 2.41 5.81 85.56 0.50 2.91 16 15 N -0.69 -13.54 6.48 -521.96 -3.38 -16.92 16 16 C 0.15 2.22 6.12 85.56 0.52 2.74 16 17 C -0.07 -1.41 6.54 41.06 0.27 -1.14 16 18 C 0.02 0.48 11.75 83.71 0.98 1.47 16 19 N -0.54 -14.94 11.32 -194.35 -2.20 -17.14 16 20 C 0.20 4.82 7.81 134.10 1.05 5.87 16 21 C -0.11 -1.96 10.11 22.42 0.23 -1.73 16 22 C -0.08 -0.95 10.07 22.30 0.22 -0.73 16 23 C -0.14 -1.55 9.98 22.06 0.22 -1.33 16 24 C 0.05 0.74 10.85 83.21 0.90 1.64 16 25 N -0.35 -7.56 2.94 -338.89 -1.00 -8.55 16 26 C -0.06 -1.90 9.69 22.25 0.22 -1.68 16 27 C -0.21 -8.82 9.99 22.39 0.22 -8.60 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.34 7.38 8.71 -89.69 -0.78 6.60 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 39 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 40 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -79.96 364.42 2.70 -77.26 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.27 Total: 27.76 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 6.91 Total: -36.05 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -6.28 Total: -99.53 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.22 Total: -14.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -79.96 2.70 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171769110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.169 kcal (2) G-P(sol) polarization free energy of solvation -79.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds