Wall clock time and date at job start Tue Mar 31 2020 13:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48498 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46718 * 299.99632 * 3 2 1 6 6 H 1.48497 * 109.47548 * 59.99642 * 3 2 1 7 7 C 1.37883 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99576 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46994 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46775 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00258 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00180 * 179.97438 * 13 12 11 16 16 N 1.40103 * 119.99524 * 0.02562 * 15 13 12 17 17 C 1.34780 * 119.99524 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47372 * 59.99793 * 9 7 2 29 29 H 1.09002 * 109.47467 * 299.99799 * 9 7 2 30 30 H 1.09003 * 109.47442 * 60.00416 * 10 9 7 31 31 H 1.08996 * 109.47323 * 299.99723 * 10 9 7 32 32 H 1.09000 * 109.47332 * 60.00502 * 11 10 9 33 33 H 1.09004 * 109.47155 * 299.99839 * 11 10 9 34 34 H 0.97001 * 120.00624 * 0.02562 * 12 11 10 35 35 H 0.96995 * 120.00011 * 179.97438 * 15 13 12 36 36 H 0.96995 * 120.00466 * 359.97438 * 16 15 13 37 37 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 38 38 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 39 39 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0018 13 6 1.9828 -7.3713 0.0019 14 8 0.7874 -7.5935 0.0020 15 7 2.8586 -8.3958 0.0020 16 7 4.2360 -8.1397 0.0024 17 6 5.1118 -9.1642 0.0020 18 8 4.7075 -10.3077 0.0016 19 6 6.5934 -8.8889 0.0019 20 6 7.3469 -10.1940 0.0020 21 6 7.8725 -10.6889 -1.1767 22 6 8.5641 -11.8857 -1.1769 23 6 8.7305 -12.5894 0.0017 24 6 8.2050 -12.0972 1.1811 25 6 7.5178 -10.8949 1.1836 26 9 7.0089 -10.4095 2.3371 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6044 -0.8894 32 1 0.8532 -5.0451 -0.8886 33 1 0.8537 -5.0446 0.8914 34 1 3.3858 -5.9235 0.0021 35 1 2.5352 -9.3102 0.0024 36 1 4.5594 -7.2253 0.0024 37 1 6.8567 -8.3170 -0.8880 38 1 6.8569 -8.3176 0.8920 39 1 7.7428 -10.1404 -2.0978 40 1 8.9741 -12.2718 -2.0983 41 1 9.2707 -13.5246 0.0004 42 1 8.3347 -12.6472 2.1014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171834420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:44 Heat of formation + Delta-G solvation = -61.505289 kcal Electronic energy + Delta-G solvation = -25587.304057 eV Core-core repulsion = 21482.949089 eV Total energy + Delta-G solvation = -4104.354968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.24726 -40.78588 -39.78906 -38.92413 -35.91852 -35.57647 -33.60198 -33.32506 -31.53296 -31.00543 -30.79005 -27.91893 -26.71067 -23.40065 -23.27045 -22.82548 -21.33612 -21.06450 -20.62371 -18.98563 -18.09246 -17.95070 -16.96998 -16.60974 -16.29200 -16.20372 -15.97678 -15.74899 -15.29415 -15.26237 -14.69540 -14.53671 -14.38407 -14.18148 -14.02058 -13.73300 -13.63022 -12.84688 -12.65438 -12.34633 -12.07495 -11.95146 -11.88791 -11.51106 -11.46236 -10.96258 -10.86348 -10.71666 -10.59504 -10.34483 -9.94790 -9.53141 -9.43099 -9.16636 -9.07946 -9.07405 -8.48975 -8.41603 -6.05936 -4.09309 0.65122 0.77936 1.63407 2.08051 2.98017 3.10222 3.15617 3.26919 3.34717 3.37517 3.84814 3.94117 4.09971 4.24729 4.40415 4.48392 4.65441 4.76393 4.84741 4.88171 4.98740 5.30030 5.37916 5.52595 5.58764 5.68671 5.70621 5.82975 5.94554 6.06696 6.14784 6.30689 6.41886 6.44418 6.52021 6.77981 6.92036 7.04680 7.46234 7.58848 7.70599 7.92377 8.03904 8.32486 8.43772 8.97462 9.55138 11.05282 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.001940 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.380061 B =14428.758010 C =15332.281145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.131 3.869 12 N -0.738 5.738 13 C 0.709 3.291 14 O -0.571 6.571 15 N -0.537 5.537 16 N -0.527 5.527 17 C 0.517 3.483 18 O -0.526 6.526 19 C -0.093 4.093 20 C -0.105 4.105 21 C -0.078 4.078 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.155 4.155 25 C 0.118 3.882 26 F -0.136 7.136 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.388 0.612 35 H 0.440 0.560 36 H 0.422 0.578 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.037 -23.496 -1.223 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.009 3.991 12 N -0.394 5.394 13 C 0.408 3.592 14 O -0.444 6.444 15 N -0.295 5.295 16 N -0.279 5.279 17 C 0.303 3.697 18 O -0.400 6.400 19 C -0.134 4.134 20 C -0.106 4.106 21 C -0.096 4.096 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.173 4.173 25 C 0.099 3.901 26 F -0.114 7.114 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.222 0.778 35 H 0.286 0.714 36 H 0.263 0.737 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.638 -24.142 -1.174 31.143 hybrid contribution 0.813 1.228 0.250 1.494 sum 20.451 -22.914 -0.923 30.727 Atomic orbital electron populations 1.69973 1.06055 1.26635 1.50461 1.25039 0.94866 0.99345 0.95258 0.86522 0.79997 0.83746 0.77623 1.19777 1.21005 1.20996 1.21217 0.92998 0.90884 1.51021 0.92586 1.19036 0.93847 0.90755 0.97811 1.21910 0.99880 0.93211 1.00885 1.21639 0.91230 0.83880 1.02387 1.45439 1.10323 1.04565 1.79088 1.15822 0.84336 0.80611 0.78402 1.91037 1.12250 1.82597 1.58538 1.44682 0.92585 1.10172 1.82073 1.44899 0.95671 1.10222 1.77134 1.20690 0.87737 0.84611 0.76704 1.90771 1.79574 1.20751 1.48855 1.20502 0.89398 0.96748 1.06762 1.19229 1.01512 0.96937 0.92933 1.20940 0.96047 0.95925 0.96656 1.21191 0.99901 0.95220 0.98580 1.21053 0.98184 0.99666 0.91763 1.21149 1.00571 0.95367 1.00260 1.17521 0.97090 0.93989 0.81517 1.91512 1.85083 1.87581 1.47246 0.92937 0.96162 0.96151 0.92662 0.92662 0.91478 0.91488 0.77779 0.71447 0.73692 0.86465 0.86782 0.84861 0.85151 0.84978 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.13 2.18 5.67 -4.04 -0.02 2.16 16 12 N -0.74 -9.80 5.52 -65.22 -0.36 -10.16 16 13 C 0.71 10.53 8.68 -86.91 -0.75 9.78 16 14 O -0.57 -10.94 17.18 5.29 0.09 -10.85 16 15 N -0.54 -6.44 6.26 27.64 0.17 -6.26 16 16 N -0.53 -4.57 6.26 31.22 0.20 -4.37 16 17 C 0.52 4.82 7.93 -10.98 -0.09 4.74 16 18 O -0.53 -7.01 15.80 5.56 0.09 -6.92 16 19 C -0.09 -0.54 5.56 -29.03 -0.16 -0.71 16 20 C -0.10 -0.81 4.42 -104.55 -0.46 -1.27 16 21 C -0.08 -0.49 9.67 -39.60 -0.38 -0.87 16 22 C -0.13 -0.74 10.04 -39.57 -0.40 -1.14 16 23 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 24 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 25 C 0.12 1.07 7.14 -39.42 -0.28 0.79 16 26 F -0.14 -1.42 16.66 2.25 0.04 -1.38 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 3.80 6.39 -40.82 -0.26 3.54 16 35 H 0.44 5.50 8.10 -182.60 -1.48 4.02 16 36 H 0.42 2.41 6.70 -182.60 -1.22 1.19 16 37 H 0.12 0.31 8.01 -51.93 -0.42 -0.10 16 38 H 0.11 0.50 7.94 -51.93 -0.41 0.09 16 39 H 0.13 0.55 8.04 -52.49 -0.42 0.12 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -36.05 370.07 -10.08 -46.12 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.56 Total: 1.71 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.03 Total: -3.88 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.74 Total: -46.37 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.05 -10.08 -46.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171834420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.383 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds