Wall clock time and date at job start Tue Mar 31 2020 13:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48498 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46718 * 299.99632 * 3 2 1 6 6 H 1.48497 * 109.47548 * 59.99642 * 3 2 1 7 7 C 1.37883 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99576 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46994 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46775 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00258 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00180 * 179.97438 * 13 12 11 16 16 N 1.40103 * 119.99524 * 0.02562 * 15 13 12 17 17 C 1.34780 * 119.99524 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.38215 * 120.01293 * 100.00060 * 20 19 17 22 22 C 1.38223 * 120.02750 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.04965 * 0.02562 * 22 21 20 24 24 C 1.38178 * 120.02564 * 0.02562 * 23 22 21 25 25 C 1.38445 * 120.01246 * 279.72227 * 20 19 17 26 26 F 1.35105 * 120.02239 * 0.02562 * 25 20 19 27 27 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47372 * 59.99793 * 9 7 2 29 29 H 1.09002 * 109.47467 * 299.99799 * 9 7 2 30 30 H 1.09003 * 109.47442 * 60.00416 * 10 9 7 31 31 H 1.08996 * 109.47323 * 299.99723 * 10 9 7 32 32 H 1.09000 * 109.47332 * 60.00502 * 11 10 9 33 33 H 1.09004 * 109.47155 * 299.99839 * 11 10 9 34 34 H 0.97001 * 120.00624 * 0.02562 * 12 11 10 35 35 H 0.96995 * 120.00011 * 179.97438 * 15 13 12 36 36 H 0.96995 * 120.00466 * 359.97438 * 16 15 13 37 37 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 38 38 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 39 39 H 1.07996 * 119.98644 * 359.97438 * 21 20 19 40 40 H 1.07996 * 119.97518 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.98896 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.01215 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1006 0.0018 13 6 1.9828 -7.3713 0.0019 14 8 0.7874 -7.5935 0.0020 15 7 2.8586 -8.3958 0.0020 16 7 4.2360 -8.1397 0.0024 17 6 5.1118 -9.1642 0.0020 18 8 4.7075 -10.3077 0.0016 19 6 6.5934 -8.8889 0.0019 20 6 7.3469 -10.1940 0.0020 21 6 7.8725 -10.6889 -1.1767 22 6 8.5641 -11.8857 -1.1769 23 6 8.7305 -12.5894 0.0017 24 6 8.2050 -12.0972 1.1811 25 6 7.5178 -10.8949 1.1836 26 9 7.0089 -10.4095 2.3371 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6044 -0.8894 32 1 0.8532 -5.0451 -0.8886 33 1 0.8537 -5.0446 0.8914 34 1 3.3858 -5.9235 0.0021 35 1 2.5352 -9.3102 0.0024 36 1 4.5594 -7.2253 0.0024 37 1 6.8567 -8.3170 -0.8880 38 1 6.8569 -8.3176 0.8920 39 1 7.7428 -10.1404 -2.0978 40 1 8.9741 -12.2718 -2.0983 41 1 9.2707 -13.5246 0.0004 42 1 8.3347 -12.6472 2.1014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171834420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:44 Heat of formation + Delta-G solvation = -86.770931 kcal Electronic energy + Delta-G solvation = -25588.399657 eV Core-core repulsion = 21482.949089 eV Total energy + Delta-G solvation = -4105.450569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.90799 -41.72821 -40.66647 -39.56946 -37.06451 -36.90416 -35.15657 -34.15395 -32.99937 -31.99926 -31.40084 -28.68273 -28.26906 -25.13026 -23.76631 -23.45116 -22.46297 -22.24450 -21.77471 -20.08836 -18.95633 -18.52193 -18.43146 -17.53499 -17.29899 -17.07646 -16.86373 -16.56514 -16.46674 -16.25386 -16.22051 -15.55856 -15.53318 -15.13528 -15.00092 -14.26499 -14.23811 -14.17421 -13.72356 -13.64358 -13.27223 -13.14892 -12.79162 -12.55726 -12.53325 -12.41032 -12.32916 -11.99948 -11.92739 -11.65728 -11.43359 -11.29263 -11.14476 -10.53569 -10.33667 -9.90636 -9.59540 -9.44753 -8.17108 -6.28019 0.13976 0.29365 0.79103 1.33638 1.43824 1.44331 1.56914 1.90529 1.93578 2.44170 2.65627 3.17285 3.34221 3.38679 3.50745 3.80549 4.00522 4.09971 4.13820 4.25351 4.30819 4.42426 4.53869 4.57384 4.57521 4.92267 4.96818 4.97964 5.12547 5.18326 5.22973 5.26513 5.33954 5.39267 5.50169 5.51235 5.57330 5.74668 5.87706 5.98308 6.21131 6.24988 6.56683 6.90344 7.14478 7.31385 7.41622 8.95066 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.001940 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.380061 B =14428.758010 C =15332.281145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.145 3.855 12 N -0.721 5.721 13 C 0.711 3.289 14 O -0.619 6.619 15 N -0.533 5.533 16 N -0.515 5.515 17 C 0.518 3.482 18 O -0.569 6.569 19 C -0.088 4.088 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.133 4.133 23 C -0.092 4.092 24 C -0.170 4.170 25 C 0.083 3.917 26 F -0.153 7.153 27 H 0.262 0.738 28 H -0.007 1.007 29 H -0.008 1.008 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.409 0.591 35 H 0.439 0.561 36 H 0.437 0.563 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.319 -23.285 -2.217 33.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.021 3.979 12 N -0.379 5.379 13 C 0.410 3.590 14 O -0.496 6.496 15 N -0.287 5.287 16 N -0.269 5.269 17 C 0.306 3.694 18 O -0.445 6.445 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.151 4.151 23 C -0.110 4.110 24 C -0.189 4.189 25 C 0.064 3.936 26 F -0.131 7.131 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.246 0.754 35 H 0.284 0.716 36 H 0.282 0.718 37 H 0.175 0.825 38 H 0.149 0.851 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 23.005 -23.926 -2.167 33.262 hybrid contribution -0.160 1.054 0.539 1.194 sum 22.845 -22.872 -1.628 32.368 Atomic orbital electron populations 1.70122 1.07953 1.27625 1.51902 1.26028 0.95722 1.03570 0.94981 0.85379 0.79357 0.78754 0.77413 1.17919 1.20828 1.20898 1.21720 0.93862 0.91865 1.50018 0.91210 1.18964 0.94548 0.92983 0.95192 1.21608 0.98478 0.91230 1.02566 1.21231 0.91297 0.84275 1.01113 1.44997 1.10923 1.03292 1.78680 1.15802 0.83926 0.81121 0.78157 1.91007 1.14608 1.83442 1.60530 1.44431 0.94203 1.09314 1.80778 1.44985 0.93733 1.11274 1.76930 1.21433 0.88959 0.83852 0.75176 1.90761 1.80408 1.22583 1.50759 1.20649 0.86032 0.96663 1.09444 1.19506 1.01903 0.97722 0.92891 1.21325 0.95536 0.96321 0.97023 1.21601 0.99098 0.94901 0.99456 1.21403 0.97770 1.00511 0.91303 1.21399 1.00830 0.95247 1.01391 1.17949 0.98657 0.95265 0.81704 1.91458 1.85580 1.87897 1.48214 0.92942 0.98853 0.98952 0.90969 0.90780 0.92844 0.93032 0.75356 0.71628 0.71825 0.82524 0.85139 0.82476 0.82634 0.82618 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 13.29 21.45 0.28 -55.86 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 42.63 29.54 68.60 2.03 44.65 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -28.71 9.11 25.60 0.23 -28.48 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.04 4.97 29.84 0.15 1.18 16 10 C -0.10 -3.52 5.27 30.60 0.16 -3.36 16 11 C 0.15 4.75 5.67 86.38 0.49 5.24 16 12 N -0.72 -17.97 5.52 -478.52 -2.64 -20.61 16 13 C 0.71 20.64 8.68 179.05 1.55 22.19 16 14 O -0.62 -24.08 17.18 -3.99 -0.07 -24.14 16 15 N -0.53 -12.24 6.26 -184.74 -1.16 -13.40 16 16 N -0.52 -7.81 6.26 -173.53 -1.09 -8.90 16 17 C 0.52 8.75 7.93 87.66 0.70 9.45 16 18 O -0.57 -14.85 15.80 -3.03 -0.05 -14.90 16 19 C -0.09 -0.79 5.56 29.10 0.16 -0.63 16 20 C -0.12 -1.64 4.42 -19.82 -0.09 -1.73 16 21 C -0.08 -0.85 9.67 22.26 0.22 -0.63 16 22 C -0.13 -1.17 10.04 22.27 0.22 -0.95 16 23 C -0.09 -0.93 10.04 22.26 0.22 -0.70 16 24 C -0.17 -2.45 10.03 22.31 0.22 -2.23 16 25 C 0.08 1.49 7.14 22.38 0.16 1.65 16 26 F -0.15 -3.26 16.66 44.97 0.75 -2.51 16 27 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 28 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.41 6.74 6.39 -92.71 -0.59 6.15 16 35 H 0.44 10.90 8.10 -213.32 -1.73 9.17 16 36 H 0.44 3.57 6.70 -213.32 -1.43 2.14 16 37 H 0.16 0.14 8.01 -2.39 -0.02 0.12 16 38 H 0.13 0.78 7.94 -2.39 -0.02 0.76 16 39 H 0.16 0.72 8.04 -2.91 -0.02 0.70 16 40 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -80.95 370.07 0.25 -80.70 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -2.67 Total: 13.82 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.86 Total: 1.15 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -4.60 Total: -98.77 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.12 Total: -39.04 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.75 Total: -2.51 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -80.95 0.25 -80.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171834420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.075 kcal (2) G-P(sol) polarization free energy of solvation -80.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds