Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38295 * 119.97956 * 2 1 4 4 C 1.38237 * 120.25459 * 179.49559 * 3 2 1 5 5 Cl 1.73594 * 120.15305 * 180.02562 * 4 3 2 6 6 C 1.39057 * 119.69096 * 0.02827 * 4 3 2 7 7 C 1.37929 * 119.69673 * 0.88403 * 6 4 3 8 8 C 1.37999 * 120.66794 * 358.68822 * 7 6 4 9 9 C 1.51737 * 119.24120 * 178.44615 * 7 6 4 10 10 H 1.08999 * 109.59319 * 187.95993 * 9 7 6 11 11 N 1.46899 * 109.59795 * 308.42984 * 9 7 6 12 12 C 1.46901 * 111.00032 * 274.21930 * 11 9 7 13 13 C 1.53000 * 109.46972 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47058 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.46962 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00535 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99954 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99665 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00225 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.47094 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47254 * 119.99597 * 19 17 15 22 22 H 1.48497 * 109.47178 * 239.99964 * 19 17 15 23 23 C 1.52856 * 108.70534 * 68.19853 * 9 7 6 24 24 C 1.52120 * 110.85774 * 276.45448 * 23 9 7 25 25 C 1.51445 * 113.45468 * 67.74849 * 24 23 9 26 26 O 1.36060 * 119.73456 * 181.19223 * 6 4 3 27 27 H 1.09002 * 109.46830 * 90.00094 * 1 2 3 28 28 H 1.08998 * 109.47331 * 209.99910 * 1 2 3 29 29 H 1.08996 * 109.47584 * 330.00222 * 1 2 3 30 30 H 1.08006 * 119.87371 * 359.52205 * 3 2 1 31 31 H 1.07992 * 120.18084 * 180.79809 * 8 7 6 32 32 H 1.00899 * 110.99905 * 38.17715 * 11 9 7 33 33 H 1.08997 * 109.47010 * 300.00250 * 12 11 9 34 34 H 1.08998 * 109.46842 * 60.00265 * 12 11 9 35 35 H 1.08996 * 109.47324 * 300.00525 * 13 12 11 36 36 H 1.09005 * 109.46795 * 60.00157 * 13 12 11 37 37 H 1.08997 * 109.46958 * 300.00312 * 14 13 12 38 38 H 1.08998 * 109.46808 * 60.00275 * 14 13 12 39 39 H 0.97000 * 119.99573 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.20176 * 36.81386 * 23 9 7 41 41 H 1.09001 * 109.19323 * 156.10338 * 23 9 7 42 42 H 1.08998 * 108.68444 * 188.76870 * 24 23 9 43 43 H 1.08996 * 108.68784 * 306.84433 * 24 23 9 44 44 H 1.08997 * 109.20334 * 55.12289 * 25 24 23 45 45 H 1.09005 * 109.20047 * 174.41986 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1979 0.0000 4 6 3.5804 1.2046 0.0105 5 17 4.4451 2.7098 0.0112 6 6 4.2749 -0.0001 0.0205 7 6 3.5785 -1.1905 0.0014 8 6 2.1985 -1.1988 -0.0005 9 6 4.3471 -2.4986 -0.0234 10 1 3.6551 -3.3263 -0.1784 11 7 5.3357 -2.4687 -1.1095 12 6 4.7341 -2.8927 -2.3808 13 6 5.7917 -2.8480 -3.4855 14 6 5.1650 -3.2891 -4.8098 15 6 6.2068 -3.2456 -5.8976 16 1 7.2153 -2.9350 -5.6676 17 6 5.8727 -3.6025 -7.1869 18 7 4.6447 -3.9813 -7.4670 19 14 7.1642 -3.5494 -8.5353 20 1 8.4572 -3.0933 -7.9646 21 1 7.3300 -4.9063 -9.1157 22 1 6.7323 -2.6059 -9.5976 23 6 5.0623 -2.6723 1.3163 24 6 6.3851 -1.9211 1.3256 25 6 6.2236 -0.4157 1.2910 26 8 5.6350 0.0054 0.0554 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6556 2.1319 -0.0078 31 1 1.6612 -2.1355 -0.0025 32 1 5.7525 -1.5537 -1.1940 33 1 4.3543 -3.9096 -2.2817 34 1 3.9139 -2.2218 -2.6362 35 1 6.1711 -1.8310 -3.5844 36 1 6.6122 -3.5187 -3.2302 37 1 4.7853 -4.3060 -4.7111 38 1 4.3447 -2.6181 -5.0647 39 1 4.4097 -4.2327 -8.3739 40 1 4.4267 -2.2888 2.1144 41 1 5.2508 -3.7322 1.4871 42 1 6.9346 -2.1927 2.2269 43 1 6.9672 -2.2283 0.4568 44 1 5.5843 -0.1046 2.1171 45 1 7.2020 0.0523 1.3998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178275977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = -39.610775 kcal Electronic energy + Delta-G solvation = -25490.394439 eV Core-core repulsion = 21918.865607 eV Total energy + Delta-G solvation = -3571.528832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.06577 -38.14927 -36.99769 -36.34414 -34.38542 -33.11527 -32.36478 -31.21057 -30.28617 -28.16097 -26.46017 -25.75496 -24.34271 -22.91370 -22.29894 -21.07503 -20.25002 -19.63769 -18.06210 -17.03941 -16.22982 -16.08756 -15.71598 -14.98880 -14.90540 -14.60264 -14.40495 -14.29189 -14.20518 -13.90893 -13.68301 -13.04557 -12.80693 -12.60748 -12.55682 -12.34262 -12.16369 -11.98923 -11.82040 -11.49104 -11.34066 -11.19988 -10.96247 -10.82228 -10.77142 -10.67534 -10.50953 -10.38228 -10.09799 -9.63409 -9.29335 -9.00559 -8.89461 -8.56345 -8.29093 -8.12507 -5.94318 -3.95739 0.84084 0.95461 1.98193 3.10605 3.35179 3.42277 3.47404 3.58647 4.31923 4.40557 4.51645 4.59823 4.75049 4.81756 4.85511 4.94172 5.01806 5.09207 5.14686 5.24374 5.34952 5.36534 5.41669 5.53904 5.63224 5.70153 5.76515 5.79220 5.82654 5.90140 5.97097 6.05928 6.10289 6.23647 6.30009 6.41210 6.42374 6.81070 6.85027 7.21880 7.22031 7.41001 7.74925 7.77863 7.91206 8.06823 8.50713 9.11691 9.67945 11.17279 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003205 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.676152 B = 8735.179796 C = 9025.889397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.105 4.105 4 C -0.044 4.044 5 Cl -0.058 7.058 6 C 0.106 3.894 7 C -0.123 4.123 8 C -0.094 4.094 9 C 0.128 3.872 10 H 0.089 0.911 11 N -0.678 5.678 12 C 0.058 3.942 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.103 4.103 24 C -0.156 4.156 25 C 0.067 3.933 26 O -0.313 6.313 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.354 0.646 33 H 0.065 0.935 34 H 0.023 0.977 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 8.979 23.521 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.071 4.071 5 Cl -0.029 7.029 6 C 0.061 3.939 7 C -0.126 4.126 8 C -0.113 4.113 9 C 0.017 3.983 10 H 0.107 0.893 11 N -0.313 5.313 12 C -0.070 4.070 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.141 4.141 24 C -0.193 4.193 25 C -0.007 4.007 26 O -0.229 6.229 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.178 0.822 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.435 8.492 23.376 25.457 hybrid contribution -0.006 0.902 -0.987 1.337 sum -5.441 9.394 22.388 24.882 Atomic orbital electron populations 1.20790 0.90244 1.02981 1.02924 1.19915 0.96541 0.92225 0.99421 1.20817 0.91271 0.98855 1.01493 1.21209 0.92521 0.86762 1.06649 1.98366 1.77051 1.30648 1.96826 1.18100 0.84015 0.90431 1.01376 1.21191 0.94716 0.96310 1.00377 1.20964 0.92752 0.98130 0.99422 1.20805 0.92346 0.91878 0.93286 0.89317 1.60916 1.30347 1.35101 1.04896 1.22149 0.96983 0.99362 0.88550 1.21600 0.97251 1.00502 0.95027 1.19058 0.95978 0.96392 0.90059 1.21308 0.96616 1.44173 0.93322 0.92627 1.25027 0.95307 0.95453 0.98758 1.69984 1.17973 1.45893 1.19853 0.86553 0.81980 0.77569 0.82013 1.19707 1.21043 1.21082 1.21333 0.96199 1.01153 0.95422 1.21637 0.99014 0.94515 1.04170 1.22611 0.98375 0.95310 0.84431 1.86319 1.14797 1.86248 1.35576 0.90587 0.91145 0.91349 0.84713 0.84915 0.82197 0.91675 0.95911 0.93707 0.92619 0.96639 0.96881 0.93171 0.92413 0.90686 0.91078 0.88644 0.92946 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.08 -0.82 5.89 -104.54 -0.62 -1.44 16 3 C -0.11 -1.14 9.47 -39.56 -0.37 -1.52 16 4 C -0.04 -0.55 6.34 -39.28 -0.25 -0.80 16 5 Cl -0.06 -0.70 28.51 -51.86 -1.48 -2.17 16 6 C 0.11 1.39 5.27 -39.39 -0.21 1.18 16 7 C -0.12 -1.53 4.62 -104.31 -0.48 -2.02 16 8 C -0.09 -1.03 9.35 -39.61 -0.37 -1.40 16 9 C 0.13 1.59 2.69 -68.43 -0.18 1.40 16 10 H 0.09 1.07 7.60 -51.93 -0.39 0.68 16 11 N -0.68 -10.37 4.91 -107.49 -0.53 -10.90 16 12 C 0.06 1.06 5.49 -3.82 -0.02 1.04 16 13 C -0.11 -2.31 5.41 -26.73 -0.14 -2.46 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.10 -1.04 5.54 -27.25 -0.15 -1.19 16 24 C -0.16 -1.53 5.28 -27.97 -0.15 -1.67 16 25 C 0.07 0.67 6.49 36.37 0.24 0.91 16 26 O -0.31 -4.13 7.46 -19.93 -0.15 -4.28 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.13 1.22 7.99 -52.49 -0.42 0.80 16 32 H 0.35 5.70 5.32 -39.29 -0.21 5.49 16 33 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 1.13 6.80 -51.93 -0.35 0.78 16 44 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -31.70 371.45 -10.96 -42.66 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.22 Total: 0.64 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.90 Total: -21.89 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.21 Total: -37.78 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.15 Total: -4.28 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.70 -10.96 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.049 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds