Wall clock time and date at job start Tue Mar 31 2020 14:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.94628 * 2 1 4 4 C 1.38271 * 120.19140 * 180.63757 * 3 2 1 5 5 Cl 1.73596 * 120.18738 * 179.69764 * 4 3 2 6 6 C 1.38969 * 119.62730 * 359.71483 * 4 3 2 7 7 C 1.37878 * 119.92201 * 359.27421 * 6 4 3 8 8 C 1.38106 * 120.46565 * 1.13044 * 7 6 4 9 9 C 1.51610 * 119.59139 * 182.14125 * 7 6 4 10 10 H 1.08993 * 109.59808 * 171.13341 * 9 7 6 11 11 N 1.46898 * 109.59665 * 50.65703 * 9 7 6 12 12 C 1.46894 * 111.00056 * 85.00004 * 11 9 7 13 13 C 1.53001 * 109.47429 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47317 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47197 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99578 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00302 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99975 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00429 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46706 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47460 * 119.99948 * 19 17 15 22 22 H 1.48499 * 109.47082 * 240.00030 * 19 17 15 23 23 C 1.52899 * 108.69302 * 290.89626 * 9 7 6 24 24 C 1.52155 * 110.75625 * 83.16936 * 23 9 7 25 25 C 1.51422 * 113.45135 * 292.60999 * 24 23 9 26 26 O 1.36248 * 119.85421 * 178.15839 * 6 4 3 27 27 H 1.08999 * 109.47206 * 270.25346 * 1 2 3 28 28 H 1.08997 * 109.47068 * 30.26284 * 1 2 3 29 29 H 1.09002 * 109.46796 * 150.25594 * 1 2 3 30 30 H 1.08008 * 119.90310 * 0.37841 * 3 2 1 31 31 H 1.08002 * 120.15952 * 179.20016 * 8 7 6 32 32 H 1.00898 * 111.00316 * 321.04538 * 11 9 7 33 33 H 1.08997 * 109.47190 * 299.99884 * 12 11 9 34 34 H 1.09005 * 109.47341 * 59.99742 * 12 11 9 35 35 H 1.08997 * 109.47049 * 300.00226 * 13 12 11 36 36 H 1.08995 * 109.46832 * 59.99799 * 13 12 11 37 37 H 1.08997 * 109.47235 * 300.00100 * 14 13 12 38 38 H 1.09007 * 109.46758 * 60.00386 * 14 13 12 39 39 H 0.96998 * 119.99813 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.21900 * 322.84085 * 23 9 7 41 41 H 1.08996 * 109.18407 * 203.47805 * 23 9 7 42 42 H 1.09001 * 108.69228 * 171.58575 * 24 23 9 43 43 H 1.09003 * 108.68944 * 53.63522 * 24 23 9 44 44 H 1.08999 * 109.17568 * 305.20964 * 25 24 23 45 45 H 1.08997 * 109.17637 * 185.99047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2042 -0.0133 5 17 4.4463 2.7085 -0.0212 6 6 4.2721 -0.0008 -0.0207 7 6 3.5787 -1.1924 0.0005 8 6 2.1977 -1.1989 0.0055 9 6 4.3416 -2.5019 0.0415 10 1 3.6471 -3.3245 0.2119 11 7 5.3351 -2.4596 1.1228 12 6 4.7330 -2.8442 2.4063 13 6 5.7961 -2.7889 3.5053 14 6 5.1691 -3.1901 4.8420 15 6 6.2163 -3.1363 5.9244 16 1 7.2280 -2.8454 5.6828 17 6 5.8832 -3.4593 7.2226 18 7 4.6516 -3.8150 7.5165 19 14 7.1811 -3.3919 8.5644 20 1 8.4775 -2.9666 7.9781 21 1 6.7657 -2.4190 9.6066 22 1 7.3320 -4.7370 9.1751 23 6 5.0504 -2.6984 -1.2989 24 6 6.3715 -1.9440 -1.3260 25 6 6.2066 -0.4389 -1.3077 26 8 5.6336 -0.0007 -0.0717 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6548 2.1322 0.0062 31 1 1.6595 -2.1353 0.0090 32 1 5.7650 -1.5488 1.1835 33 1 3.9234 -2.1559 2.6485 34 1 4.3386 -3.8578 2.3334 35 1 6.6055 -3.4775 3.2628 36 1 6.1908 -1.7756 3.5782 37 1 4.3595 -2.5019 5.0847 38 1 4.7747 -4.2037 4.7686 39 1 4.4171 -4.0419 8.4299 40 1 4.4104 -2.3299 -2.1006 41 1 5.2406 -3.7607 -1.4512 42 1 6.9157 -2.2248 -2.2278 43 1 6.9613 -2.2413 -0.4588 44 1 5.5561 -0.1401 -2.1296 45 1 7.1823 0.0297 -1.4360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178275990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:06 Heat of formation + Delta-G solvation = -39.546317 kcal Electronic energy + Delta-G solvation = -25501.237387 eV Core-core repulsion = 21929.711350 eV Total energy + Delta-G solvation = -3571.526037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.06703 -38.14641 -36.99330 -36.34286 -34.38590 -33.11570 -32.36228 -31.21342 -30.28474 -28.15460 -26.46352 -25.75358 -24.34631 -22.91365 -22.30157 -21.07360 -20.24832 -19.63859 -18.05990 -17.03774 -16.22910 -16.09106 -15.70432 -14.99647 -14.90729 -14.60064 -14.40309 -14.29016 -14.21316 -13.90682 -13.68450 -13.04461 -12.80663 -12.60475 -12.55773 -12.34232 -12.16107 -11.98399 -11.82329 -11.48683 -11.34035 -11.20142 -10.95702 -10.82201 -10.77267 -10.67867 -10.50854 -10.38243 -10.10359 -9.63307 -9.29258 -9.00317 -8.89064 -8.56453 -8.29022 -8.12725 -5.94191 -3.95666 0.84438 0.95053 1.98170 3.09907 3.35245 3.42346 3.47473 3.59062 4.32151 4.40828 4.51683 4.59808 4.74897 4.81717 4.85328 4.94151 5.01763 5.09041 5.14737 5.24414 5.35094 5.36526 5.41787 5.53811 5.63113 5.70037 5.76372 5.79021 5.82483 5.90107 5.97103 6.06001 6.10338 6.23656 6.29399 6.41380 6.42238 6.81143 6.85134 7.21614 7.22030 7.41078 7.75004 7.77973 7.91300 8.06912 8.50771 9.11745 9.68067 11.17402 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003221 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.532684 B = 8690.022112 C = 8982.545261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.105 4.105 4 C -0.044 4.044 5 Cl -0.057 7.057 6 C 0.106 3.894 7 C -0.124 4.124 8 C -0.094 4.094 9 C 0.128 3.872 10 H 0.089 0.911 11 N -0.678 5.678 12 C 0.058 3.942 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.103 4.103 24 C -0.156 4.156 25 C 0.067 3.933 26 O -0.314 6.314 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.354 0.646 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 8.514 -23.652 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.081 4.081 3 C -0.124 4.124 4 C -0.071 4.071 5 Cl -0.028 7.028 6 C 0.061 3.939 7 C -0.126 4.126 8 C -0.113 4.113 9 C 0.017 3.983 10 H 0.107 0.893 11 N -0.313 5.313 12 C -0.070 4.070 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.141 4.141 24 C -0.193 4.193 25 C -0.007 4.007 26 O -0.230 6.230 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.178 0.822 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.497 8.026 -23.494 25.429 hybrid contribution 0.008 0.923 0.972 1.340 sum -5.490 8.949 -22.523 24.849 Atomic orbital electron populations 1.20792 0.90251 1.02978 1.02923 1.19906 0.96551 0.92228 0.99452 1.20826 0.91257 0.98855 1.01456 1.21164 0.92492 0.86762 1.06672 1.98367 1.76957 1.30694 1.96823 1.18116 0.83958 0.90457 1.01376 1.21198 0.94732 0.96321 1.00389 1.21000 0.92791 0.98117 0.99393 1.20785 0.92400 0.91800 0.93297 0.89281 1.60918 1.29516 1.36356 1.04490 1.22145 0.97020 0.99510 0.88364 1.21598 0.97196 1.00498 0.95083 1.19060 0.95982 0.96505 0.89941 1.21308 0.96230 1.45001 0.92871 0.92628 1.25024 0.95311 0.95441 0.98761 1.69983 1.17799 1.46704 1.19225 0.86553 0.82023 0.77565 0.81980 1.19708 1.21076 1.21051 1.21350 0.96219 1.01123 0.95424 1.21639 0.99043 0.94494 1.04166 1.22583 0.98576 0.95170 0.84383 1.86333 1.15054 1.85731 1.35912 0.90587 0.91349 0.91155 0.84687 0.84928 0.82178 0.95909 0.91687 0.92623 0.93705 0.96883 0.96638 0.93171 0.92382 0.90669 0.91065 0.88691 0.92959 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.08 -0.83 5.88 -104.56 -0.62 -1.44 16 3 C -0.11 -1.14 9.48 -39.55 -0.37 -1.52 16 4 C -0.04 -0.55 6.34 -39.30 -0.25 -0.80 16 5 Cl -0.06 -0.69 28.52 -51.86 -1.48 -2.17 16 6 C 0.11 1.40 5.29 -39.44 -0.21 1.19 16 7 C -0.12 -1.54 4.58 -104.35 -0.48 -2.02 16 8 C -0.09 -1.04 9.34 -39.58 -0.37 -1.41 16 9 C 0.13 1.59 2.69 -68.47 -0.18 1.41 16 10 H 0.09 1.07 7.60 -51.93 -0.39 0.68 16 11 N -0.68 -10.39 4.95 -107.54 -0.53 -10.92 16 12 C 0.06 1.06 5.49 -3.83 -0.02 1.04 16 13 C -0.11 -2.32 5.41 -26.73 -0.14 -2.46 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 19 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.10 -1.04 5.55 -27.21 -0.15 -1.19 16 24 C -0.16 -1.52 5.27 -27.96 -0.15 -1.67 16 25 C 0.07 0.67 6.48 36.36 0.24 0.91 16 26 O -0.31 -4.15 7.47 -20.53 -0.15 -4.30 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.13 1.22 7.98 -52.49 -0.42 0.80 16 32 H 0.35 5.70 5.27 -39.29 -0.21 5.49 16 33 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 34 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.12 6.80 -51.93 -0.35 0.77 16 44 H 0.05 0.48 7.89 -51.93 -0.41 0.07 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -31.73 371.38 -10.96 -42.70 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.21 Total: 0.65 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.90 Total: -21.88 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.20 Total: -37.81 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.15 Total: -4.30 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.73 -10.96 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.150 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds