Wall clock time and date at job start Tue Mar 31 2020 14:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38286 * 119.94628 * 2 1 4 4 C 1.38271 * 120.19140 * 180.63757 * 3 2 1 5 5 Cl 1.73596 * 120.18738 * 179.69764 * 4 3 2 6 6 C 1.38969 * 119.62730 * 359.71483 * 4 3 2 7 7 C 1.37878 * 119.92201 * 359.27421 * 6 4 3 8 8 C 1.38106 * 120.46565 * 1.13044 * 7 6 4 9 9 C 1.51610 * 119.59139 * 182.14125 * 7 6 4 10 10 H 1.08993 * 109.59808 * 171.13341 * 9 7 6 11 11 N 1.46898 * 109.59665 * 50.65703 * 9 7 6 12 12 C 1.46894 * 111.00056 * 85.00004 * 11 9 7 13 13 C 1.53001 * 109.47429 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47317 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47197 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99578 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00302 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99975 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00429 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46706 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47460 * 119.99948 * 19 17 15 22 22 H 1.48499 * 109.47082 * 240.00030 * 19 17 15 23 23 C 1.52899 * 108.69302 * 290.89626 * 9 7 6 24 24 C 1.52155 * 110.75625 * 83.16936 * 23 9 7 25 25 C 1.51422 * 113.45135 * 292.60999 * 24 23 9 26 26 O 1.36248 * 119.85421 * 178.15839 * 6 4 3 27 27 H 1.08999 * 109.47206 * 270.25346 * 1 2 3 28 28 H 1.08997 * 109.47068 * 30.26284 * 1 2 3 29 29 H 1.09002 * 109.46796 * 150.25594 * 1 2 3 30 30 H 1.08008 * 119.90310 * 0.37841 * 3 2 1 31 31 H 1.08002 * 120.15952 * 179.20016 * 8 7 6 32 32 H 1.00898 * 111.00316 * 321.04538 * 11 9 7 33 33 H 1.08997 * 109.47190 * 299.99884 * 12 11 9 34 34 H 1.09005 * 109.47341 * 59.99742 * 12 11 9 35 35 H 1.08997 * 109.47049 * 300.00226 * 13 12 11 36 36 H 1.08995 * 109.46832 * 59.99799 * 13 12 11 37 37 H 1.08997 * 109.47235 * 300.00100 * 14 13 12 38 38 H 1.09007 * 109.46758 * 60.00386 * 14 13 12 39 39 H 0.96998 * 119.99813 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.21900 * 322.84085 * 23 9 7 41 41 H 1.08996 * 109.18407 * 203.47805 * 23 9 7 42 42 H 1.09001 * 108.69228 * 171.58575 * 24 23 9 43 43 H 1.09003 * 108.68944 * 53.63522 * 24 23 9 44 44 H 1.08999 * 109.17568 * 305.20964 * 25 24 23 45 45 H 1.08997 * 109.17637 * 185.99047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2042 -0.0133 5 17 4.4463 2.7085 -0.0212 6 6 4.2721 -0.0008 -0.0207 7 6 3.5787 -1.1924 0.0005 8 6 2.1977 -1.1989 0.0055 9 6 4.3416 -2.5019 0.0415 10 1 3.6471 -3.3245 0.2119 11 7 5.3351 -2.4596 1.1228 12 6 4.7330 -2.8442 2.4063 13 6 5.7961 -2.7889 3.5053 14 6 5.1691 -3.1901 4.8420 15 6 6.2163 -3.1363 5.9244 16 1 7.2280 -2.8454 5.6828 17 6 5.8832 -3.4593 7.2226 18 7 4.6516 -3.8150 7.5165 19 14 7.1811 -3.3919 8.5644 20 1 8.4775 -2.9666 7.9781 21 1 6.7657 -2.4190 9.6066 22 1 7.3320 -4.7370 9.1751 23 6 5.0504 -2.6984 -1.2989 24 6 6.3715 -1.9440 -1.3260 25 6 6.2066 -0.4389 -1.3077 26 8 5.6336 -0.0007 -0.0717 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6548 2.1322 0.0062 31 1 1.6595 -2.1353 0.0090 32 1 5.7650 -1.5488 1.1835 33 1 3.9234 -2.1559 2.6485 34 1 4.3386 -3.8578 2.3334 35 1 6.6055 -3.4775 3.2628 36 1 6.1908 -1.7756 3.5782 37 1 4.3595 -2.5019 5.0847 38 1 4.7747 -4.2037 4.7686 39 1 4.4171 -4.0419 8.4299 40 1 4.4104 -2.3299 -2.1006 41 1 5.2406 -3.7607 -1.4512 42 1 6.9157 -2.2248 -2.2278 43 1 6.9613 -2.2413 -0.4588 44 1 5.5561 -0.1401 -2.1296 45 1 7.1823 0.0297 -1.4360 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178275990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:05 Heat of formation + Delta-G solvation = -56.272075 kcal Electronic energy + Delta-G solvation = -25501.962670 eV Core-core repulsion = 21929.711350 eV Total energy + Delta-G solvation = -3572.251320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96021 -38.99107 -38.06001 -37.37719 -36.01754 -34.54405 -33.59847 -32.23651 -31.69408 -29.20309 -27.70087 -27.03897 -25.35744 -24.22048 -23.65270 -21.97842 -21.86801 -20.69845 -18.94400 -18.53189 -17.85010 -17.14349 -16.57775 -16.52985 -16.12658 -15.81853 -15.68162 -15.41037 -15.06691 -14.97333 -14.56863 -14.37332 -14.09097 -13.70929 -13.52198 -13.47718 -13.33299 -13.18153 -13.00220 -12.80307 -12.73065 -12.46689 -12.41032 -12.24170 -12.07664 -11.80989 -11.66373 -11.54218 -11.47535 -11.37535 -11.06668 -10.96918 -10.56466 -9.81289 -9.43450 -9.35849 -8.20757 -6.31723 -0.01742 0.07905 1.07807 1.39140 1.39557 1.53429 2.27050 2.40644 2.71082 3.12191 3.27359 3.48572 3.76266 3.93941 4.01730 4.05170 4.17016 4.18435 4.25735 4.27274 4.36570 4.44035 4.48064 4.53043 4.70649 4.79486 4.81910 4.84298 4.92961 4.94678 5.00305 5.04950 5.09598 5.14087 5.20928 5.24451 5.25895 5.43428 5.48344 5.51569 5.64228 5.73616 5.84480 6.08977 6.27198 6.35583 6.49903 6.84562 7.37420 8.91491 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003221 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.532684 B = 8690.022112 C = 8982.545261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.108 4.108 4 C -0.061 4.061 5 Cl -0.061 7.061 6 C 0.090 3.910 7 C -0.136 4.136 8 C -0.101 4.101 9 C 0.126 3.874 10 H 0.092 0.908 11 N -0.675 5.675 12 C 0.074 3.926 13 C -0.091 4.091 14 C 0.028 3.972 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.275 1.275 23 C -0.099 4.099 24 C -0.152 4.152 25 C 0.063 3.937 26 O -0.334 6.334 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.351 0.649 33 H 0.010 0.990 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.038 0.962 37 H -0.013 1.013 38 H -0.005 1.005 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 8.600 -24.625 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.089 4.089 5 Cl -0.032 7.032 6 C 0.045 3.955 7 C -0.139 4.139 8 C -0.119 4.119 9 C 0.015 3.985 10 H 0.110 0.890 11 N -0.309 5.309 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.200 1.200 23 C -0.137 4.137 24 C -0.189 4.189 25 C -0.011 4.011 26 O -0.251 6.251 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.005 0.995 38 H 0.013 0.987 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.450 8.114 -24.495 26.373 hybrid contribution -0.060 0.910 1.238 1.538 sum -5.510 9.024 -23.257 25.547 Atomic orbital electron populations 1.20857 0.88059 1.04481 1.03365 1.20251 0.98115 0.91625 0.98167 1.21125 0.90807 1.00021 1.00712 1.21370 0.93230 0.86601 1.07661 1.98356 1.77181 1.30757 1.96907 1.18305 0.84096 0.90976 1.02090 1.21215 0.95375 0.95907 1.01393 1.21295 0.92475 0.99306 0.98863 1.20896 0.92164 0.92134 0.93284 0.88960 1.60884 1.30281 1.36192 1.03561 1.21826 0.95313 0.99472 0.88918 1.21346 0.97817 0.99783 0.93920 1.18943 0.95033 0.94623 0.92345 1.21711 0.96785 1.45511 0.94087 0.92464 1.25978 0.97697 0.94661 1.01422 1.70105 1.19904 1.47184 1.20151 0.85392 0.79153 0.78003 0.78476 1.18738 1.20293 1.20047 1.21339 0.96374 1.01712 0.94233 1.21606 0.98760 0.94251 1.04315 1.22766 0.99209 0.95457 0.83645 1.86297 1.15287 1.86060 1.37441 0.90504 0.89804 0.89806 0.82940 0.83290 0.82582 0.97124 0.91398 0.92603 0.94283 0.99507 0.98667 0.92736 0.90981 0.89960 0.88670 0.90834 0.92159 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.66 16 2 C -0.08 -1.53 5.88 -19.82 -0.12 -1.65 16 3 C -0.11 -2.22 9.48 22.29 0.21 -2.01 16 4 C -0.06 -1.52 6.34 22.45 0.14 -1.37 16 5 Cl -0.06 -1.46 28.52 -2.72 -0.08 -1.53 16 6 C 0.09 2.35 5.29 22.36 0.12 2.47 16 7 C -0.14 -3.29 4.58 -19.69 -0.09 -3.38 16 8 C -0.10 -2.10 9.34 22.27 0.21 -1.89 16 9 C 0.13 3.01 2.69 44.43 0.12 3.13 16 10 H 0.09 2.13 7.60 -2.39 -0.02 2.11 16 11 N -0.67 -20.57 4.95 -494.14 -2.44 -23.01 16 12 C 0.07 2.74 5.49 86.30 0.47 3.21 16 13 C -0.09 -4.06 5.41 30.59 0.17 -3.89 16 14 C 0.03 1.57 4.97 29.85 0.15 1.72 16 15 C -0.54 -32.39 9.11 25.60 0.23 -32.15 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 19 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 20 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.10 -1.83 5.55 30.28 0.17 -1.66 16 24 C -0.15 -2.75 5.27 29.80 0.16 -2.59 16 25 C 0.06 1.20 6.48 71.47 0.46 1.66 16 26 O -0.33 -8.76 7.47 -96.38 -0.72 -9.48 16 27 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.15 2.49 7.98 -2.91 -0.02 2.47 16 32 H 0.35 11.35 5.27 -89.70 -0.47 10.88 16 33 H 0.01 0.41 8.01 -2.39 -0.02 0.39 16 34 H 0.07 2.46 8.06 -2.38 -0.02 2.44 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 40 H 0.07 1.15 7.90 -2.39 -0.02 1.14 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.68 6.80 -2.39 -0.02 1.66 16 44 H 0.06 1.04 7.89 -2.39 -0.02 1.02 16 45 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -68.77 371.38 3.15 -65.62 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.50 Total: 17.29 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.58 Total: -38.63 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.16 Total: -80.92 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.72 Total: -9.48 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.53 kcal Total: -68.77 3.15 -65.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.344 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds