Wall clock time and date at job start Tue Mar 31 2020 14:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38620 * 119.31153 * 2 1 4 4 C 1.38159 * 119.56978 * 179.97438 * 3 2 1 5 5 C 1.39977 * 118.16111 * 359.97438 * 4 3 2 6 6 N 1.35389 * 133.68647 * 180.35477 * 5 4 3 7 7 C 1.31040 * 109.48956 * 180.09784 * 6 5 4 8 8 C 1.47909 * 125.11717 * 179.83342 * 7 6 5 9 9 C 1.39581 * 120.11330 * 179.97438 * 8 7 6 10 10 C 1.37976 * 119.96662 * 180.27735 * 9 8 7 11 11 C 1.38284 * 120.20085 * 359.72335 * 10 9 8 12 12 C 1.38807 * 120.23287 * 359.97438 * 11 10 9 13 13 O 1.35906 * 119.98961 * 179.97438 * 12 11 10 14 14 C 1.42896 * 116.99672 * 0.02562 * 13 12 11 15 15 C 1.53005 * 109.47401 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47684 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99603 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00138 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99673 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47026 * 60.00243 * 20 18 16 22 22 H 1.48508 * 109.47003 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47502 * 299.99560 * 20 18 16 24 24 C 1.38508 * 120.02808 * 359.97438 * 12 11 10 25 25 N 1.36956 * 109.76505 * 359.57204 * 7 6 5 26 26 H 0.97002 * 126.32203 * 180.26579 * 25 7 6 27 27 C 1.37842 * 107.35385 * 0.26191 * 25 7 6 28 28 N 1.31707 * 119.31046 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47101 * 270.02118 * 1 2 3 30 30 H 1.09001 * 109.46625 * 30.02086 * 1 2 3 31 31 H 1.08996 * 109.46806 * 150.01714 * 1 2 3 32 32 H 1.08002 * 120.22111 * 359.95430 * 3 2 1 33 33 H 1.07992 * 120.91846 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.01881 * 0.02562 * 9 8 7 35 35 H 1.07996 * 119.90183 * 179.74540 * 10 9 8 36 36 H 1.08004 * 119.88342 * 179.97438 * 11 10 9 37 37 H 1.08994 * 109.47161 * 299.99971 * 14 13 12 38 38 H 1.09001 * 109.47274 * 60.00052 * 14 13 12 39 39 H 1.09007 * 109.47148 * 300.00300 * 15 14 13 40 40 H 1.09001 * 109.46724 * 59.99887 * 15 14 13 41 41 H 0.97001 * 119.99684 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.09855 * 179.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.2087 0.0000 4 6 3.5672 1.2150 0.0005 5 6 4.2334 -0.0161 0.0016 6 7 5.5395 -0.3726 0.0084 7 6 5.6360 -1.6795 0.0039 8 6 6.9052 -2.4389 0.0054 9 6 6.8862 -3.8346 0.0007 10 6 8.0720 -4.5400 0.0079 11 6 9.2809 -3.8685 0.0139 12 6 9.3095 -2.4808 0.0123 13 8 10.5004 -1.8259 0.0189 14 6 11.6823 -2.6290 0.0267 15 6 12.9149 -1.7225 0.0326 16 6 14.1613 -2.5694 0.0414 17 1 14.0823 -3.6466 0.0423 18 6 15.4025 -1.9692 0.0484 19 7 15.4988 -0.6576 0.0469 20 14 16.9475 -3.0191 0.0601 21 1 16.9713 -3.8783 -1.1509 22 1 18.1439 -2.1392 0.0657 23 1 16.9558 -3.8742 1.2741 24 6 8.1249 -1.7630 0.0041 25 7 4.3848 -2.2363 0.0035 26 1 4.1776 -3.1839 0.0041 27 6 3.4742 -1.2014 0.0020 28 7 2.1518 -1.1485 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3632 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6380 2.1396 -0.0007 33 1 4.1179 2.1439 0.0010 34 1 5.9438 -4.3621 -0.0045 35 1 8.0560 -5.6199 0.0084 36 1 10.2060 -4.4259 0.0200 37 1 11.6887 -3.2573 0.9172 38 1 11.6993 -3.2590 -0.8627 39 1 12.9082 -1.0944 -0.8583 40 1 12.8980 -1.0922 0.9217 41 1 16.3721 -0.2354 0.0514 42 1 8.1459 -0.6832 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178980916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:44 Heat of formation + Delta-G solvation = 58.038087 kcal Electronic energy + Delta-G solvation = -24619.470747 eV Core-core repulsion = 20951.068793 eV Total energy + Delta-G solvation = -3668.401954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56748 -39.92690 -38.89648 -37.18181 -33.97865 -33.42288 -32.50896 -31.59761 -31.05727 -30.67794 -29.28239 -27.08552 -25.18335 -24.12058 -23.19771 -22.59810 -21.78931 -21.44642 -20.32909 -18.89437 -17.92501 -17.29146 -16.33826 -16.14311 -16.04572 -15.76372 -15.45904 -15.41545 -14.91854 -14.48437 -14.28898 -14.18940 -13.68898 -13.41139 -13.06254 -12.98812 -12.90142 -12.51393 -12.34650 -12.20315 -11.88183 -11.54467 -11.49776 -11.44203 -11.14409 -10.91190 -10.84056 -10.56502 -9.95105 -9.70426 -9.49920 -9.45121 -9.34533 -9.17403 -8.47481 -8.28146 -8.00938 -6.12112 -4.17338 0.19053 0.97090 1.20707 1.42846 2.12910 2.64990 3.27195 3.31750 3.33114 3.48456 3.54289 3.72790 3.80849 4.02522 4.27290 4.39004 4.51188 4.65397 4.80359 4.82929 4.91611 5.12136 5.20255 5.21906 5.24203 5.24585 5.38167 5.42369 5.48911 5.63080 5.75065 5.91409 5.93068 5.95621 5.96354 6.18106 6.28339 6.36504 6.43523 6.59292 6.64913 6.83756 7.44998 7.46633 7.58495 7.60882 7.74730 7.97512 8.20367 8.87916 9.47106 10.99270 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031309 B = 0.001907 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.099127 B =14679.816966 C =15548.125148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.162 3.838 3 C -0.182 4.182 4 C -0.015 4.015 5 C 0.003 3.997 6 N -0.468 5.468 7 C 0.351 3.649 8 C -0.004 4.004 9 C -0.151 4.151 10 C -0.077 4.077 11 C -0.192 4.192 12 C 0.147 3.853 13 O -0.310 6.310 14 C 0.063 3.937 15 C 0.025 3.975 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.888 5.888 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.107 4.107 25 N -0.583 5.583 26 H 0.428 0.572 27 C 0.248 3.752 28 N -0.487 5.487 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.872 -2.173 -0.110 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.014 3.986 3 C -0.204 4.204 4 C -0.042 4.042 5 C -0.119 4.119 6 N -0.187 5.187 7 C 0.087 3.913 8 C -0.006 4.006 9 C -0.171 4.171 10 C -0.095 4.095 11 C -0.211 4.211 12 C 0.100 3.900 13 O -0.223 6.223 14 C -0.010 4.010 15 C -0.012 4.012 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.526 5.526 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.127 4.127 25 N -0.197 5.197 26 H 0.268 0.732 27 C 0.011 3.989 28 N -0.201 5.201 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.447 -1.959 -0.103 28.514 hybrid contribution 0.704 -1.122 0.014 1.325 sum -27.742 -3.081 -0.089 27.913 Atomic orbital electron populations 1.20722 0.88100 1.03689 1.03309 1.21052 0.96538 0.86793 0.94209 1.21710 0.93962 0.99328 1.05446 1.20814 0.93387 0.95911 0.94123 1.19740 0.90370 0.94332 1.07427 1.70660 1.17698 1.09230 1.21116 1.21415 0.84128 0.88224 0.97569 1.17192 0.87490 0.91618 1.04309 1.20805 0.98558 0.91975 1.05766 1.20760 0.91199 0.99837 0.97700 1.21609 0.99735 0.93670 1.06127 1.19019 0.87017 0.90589 0.93388 1.86221 1.12257 1.37153 1.86622 1.23405 0.82496 0.95362 0.99783 1.19134 0.88035 0.95030 0.99035 1.20918 0.90282 0.92902 1.52612 0.92401 1.24986 0.99253 0.95034 0.94863 1.69963 1.24669 1.08560 1.49399 0.86544 0.82059 0.80039 0.78694 1.20104 1.21102 1.20098 1.20407 0.88134 1.01291 1.02901 1.42700 1.04832 1.09037 1.63171 0.73205 1.18825 0.89115 0.87810 1.03122 1.66155 1.05982 1.30783 1.17187 0.90150 0.90202 0.90453 0.83761 0.83715 0.86416 0.85224 0.84494 0.92906 0.92912 0.95278 0.95281 0.92606 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.15 36.01 0.37 -0.17 16 2 C 0.16 1.47 6.78 -82.50 -0.56 0.91 16 3 C -0.18 -1.47 9.70 -39.47 -0.38 -1.85 16 4 C -0.02 -0.16 10.23 -38.96 -0.40 -0.55 16 5 C 0.00 0.04 7.23 -84.69 -0.61 -0.57 16 6 N -0.47 -6.96 10.84 -8.67 -0.09 -7.05 16 7 C 0.35 4.64 7.73 -154.51 -1.19 3.44 16 8 C 0.00 -0.05 5.87 -104.99 -0.62 -0.67 16 9 C -0.15 -1.61 9.68 -39.18 -0.38 -1.99 16 10 C -0.08 -0.85 10.03 -39.66 -0.40 -1.25 16 11 C -0.19 -2.66 9.03 -39.35 -0.36 -3.02 16 12 C 0.15 2.42 6.68 -39.27 -0.26 2.15 16 13 O -0.31 -6.12 10.13 -19.45 -0.20 -6.32 16 14 C 0.06 1.30 4.68 37.16 0.17 1.47 16 15 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 16 C -0.53 -14.47 9.11 -34.44 -0.31 -14.79 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.11 -1.63 9.61 -39.03 -0.38 -2.00 16 25 N -0.58 -6.53 6.10 -9.90 -0.06 -6.59 16 26 H 0.43 3.44 8.00 -40.82 -0.33 3.11 16 27 C 0.25 3.15 8.45 -155.57 -1.31 1.84 16 28 N -0.49 -5.70 10.29 -8.46 -0.09 -5.79 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 0.88 7.10 -52.49 -0.37 0.51 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.14 1.83 6.28 -52.48 -0.33 1.50 16 37 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 38 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 39 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.15 2.31 7.80 -52.49 -0.41 1.90 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -32.91 362.63 -11.28 -44.19 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.15 Total: 0.50 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -6.87 Total: -14.94 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.50 Total: -44.87 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.20 Total: -6.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.91 -11.28 -44.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178980916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.226 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds