Wall clock time and date at job start Tue Mar 31 2020 14:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38186 * 120.13586 * 2 1 4 4 C 1.38353 * 120.25477 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 119.99714 * 179.47936 * 4 3 2 6 6 C 1.38541 * 120.00029 * 359.45412 * 4 3 2 7 7 C 1.37923 * 119.61283 * 0.10730 * 6 4 3 8 8 C 1.38010 * 120.66616 * 0.83919 * 7 6 4 9 9 O 1.36066 * 120.55626 * 178.34508 * 8 7 6 10 10 C 1.43178 * 115.59589 * 289.10302 * 9 8 7 11 11 C 1.51438 * 110.85836 * 86.55293 * 10 9 8 12 12 C 1.52114 * 113.46586 * 294.76459 * 11 10 9 13 13 C 1.51737 * 120.09329 * 181.05419 * 7 6 4 14 14 H 1.08999 * 109.59319 * 7.73840 * 13 7 6 15 15 N 1.46899 * 109.59795 * 128.20830 * 13 7 6 16 16 C 1.46897 * 110.99888 * 274.22285 * 15 13 7 17 17 C 1.53005 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47008 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47239 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99469 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00436 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47217 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47136 * 120.00356 * 23 21 19 26 26 H 1.48502 * 109.46916 * 239.99709 * 23 21 19 27 27 H 1.09005 * 109.47125 * 270.02358 * 1 2 3 28 28 H 1.09007 * 109.46929 * 30.01683 * 1 2 3 29 29 H 1.08996 * 109.47456 * 150.01551 * 1 2 3 30 30 H 1.07996 * 119.87322 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.19831 * 180.08189 * 6 4 3 32 32 H 1.09003 * 109.20047 * 326.20135 * 10 9 8 33 33 H 1.09000 * 109.20028 * 206.91583 * 10 9 8 34 34 H 1.09002 * 108.68593 * 173.73146 * 11 10 9 35 35 H 1.09003 * 108.57783 * 55.71918 * 11 10 9 36 36 H 1.08997 * 109.20060 * 307.39287 * 12 11 10 37 37 H 1.09005 * 109.20341 * 188.10260 * 12 11 10 38 38 H 1.00899 * 110.99905 * 38.17715 * 15 13 7 39 39 H 1.09003 * 109.46887 * 299.99606 * 16 15 13 40 40 H 1.08998 * 109.47201 * 60.00123 * 16 15 13 41 41 H 1.09003 * 109.46787 * 299.99382 * 17 16 15 42 42 H 1.08998 * 109.47318 * 59.99910 * 17 16 15 43 43 H 1.09003 * 109.46844 * 299.99350 * 18 17 16 44 44 H 1.08998 * 109.47152 * 59.99811 * 18 17 16 45 45 H 0.97005 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1951 0.0000 4 6 3.5843 1.1980 -0.0005 5 17 4.4491 2.7032 -0.0142 6 6 4.2795 -0.0003 0.0104 7 6 3.5843 -1.1915 0.0194 8 6 2.2043 -1.2013 0.0004 9 8 1.5212 -2.3778 -0.0244 10 6 1.5928 -3.1089 -1.2534 11 6 2.8171 -3.9998 -1.2803 12 6 4.1280 -3.2282 -1.2779 13 6 4.3344 -2.5100 0.0556 14 1 5.3971 -2.3218 0.2088 15 7 3.8155 -3.3424 1.1491 16 6 4.4833 -3.0213 2.4175 17 6 3.9180 -3.9069 3.5298 18 6 4.6140 -3.5730 4.8508 19 6 4.0568 -4.4448 5.9466 20 1 3.2833 -5.1646 5.7231 21 6 4.5344 -4.3234 7.2342 22 7 5.4767 -3.4472 7.5062 23 14 3.8432 -5.4035 8.5925 24 1 2.8013 -6.2998 8.0303 25 1 4.9353 -6.2213 9.1787 26 1 3.2440 -4.5482 9.6484 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6609 2.1304 0.0004 31 1 5.3595 -0.0018 0.0113 32 1 1.6421 -2.4068 -2.0858 33 1 0.6992 -3.7243 -1.3570 34 1 2.7783 -4.6196 -2.1761 35 1 2.7929 -4.6498 -0.4056 36 1 4.1126 -2.4929 -2.0824 37 1 4.9526 -3.9217 -1.4428 38 1 2.8146 -3.2463 1.2330 39 1 5.5541 -3.2005 2.3198 40 1 4.3111 -1.9736 2.6638 41 1 2.8472 -3.7281 3.6277 42 1 4.0906 -4.9545 3.2833 43 1 5.6847 -3.7521 4.7527 44 1 4.4419 -2.5254 5.0975 45 1 5.8126 -3.3614 8.4121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179108881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:18 Heat of formation + Delta-G solvation = -40.661209 kcal Electronic energy + Delta-G solvation = -25489.664969 eV Core-core repulsion = 21918.090587 eV Total energy + Delta-G solvation = -3571.574382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15247 -38.09231 -36.89889 -36.48055 -34.50188 -32.89912 -32.65797 -31.44650 -29.88779 -27.63807 -27.15052 -25.84951 -24.60084 -22.54037 -21.77239 -21.56102 -20.30392 -19.68798 -17.99714 -17.05499 -16.30975 -16.20457 -15.78046 -15.27837 -14.86131 -14.60482 -14.35347 -14.25105 -14.05164 -13.66848 -13.47884 -13.07232 -13.00958 -12.87857 -12.57996 -12.34576 -12.19125 -11.99027 -11.91770 -11.49244 -11.38647 -11.18770 -10.93892 -10.82258 -10.77012 -10.72141 -10.51925 -10.38933 -10.10975 -9.64383 -9.30406 -9.02552 -8.93547 -8.56842 -8.29639 -8.14238 -5.94545 -3.96274 0.79142 0.98241 1.92063 3.07076 3.34646 3.41790 3.46608 3.59001 4.30862 4.38956 4.49894 4.57402 4.71570 4.79360 4.85642 4.91074 4.98538 5.13419 5.16588 5.27681 5.33483 5.41309 5.44105 5.48708 5.63518 5.72065 5.75540 5.82696 5.89451 5.93017 5.96132 6.00631 6.05612 6.19053 6.25933 6.36519 6.40382 6.79908 6.83716 7.20975 7.23086 7.39341 7.74284 7.76798 7.90671 8.06393 8.49996 9.11172 9.67462 11.17004 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.003269 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.083164 B = 8563.042104 C = 9562.002022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.036 4.036 5 Cl -0.070 7.070 6 C -0.093 4.093 7 C -0.123 4.123 8 C 0.105 3.895 9 O -0.318 6.318 10 C 0.066 3.934 11 C -0.156 4.156 12 C -0.103 4.103 13 C 0.127 3.873 14 H 0.088 0.912 15 N -0.677 5.677 16 C 0.057 3.943 17 C -0.105 4.105 18 C 0.022 3.978 19 C -0.516 4.516 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.285 1.285 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.354 0.646 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 8.072 -23.568 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.062 4.062 5 Cl -0.042 7.042 6 C -0.113 4.113 7 C -0.126 4.126 8 C 0.061 3.939 9 O -0.234 6.234 10 C -0.008 4.008 11 C -0.193 4.193 12 C -0.141 4.141 13 C 0.016 3.984 14 H 0.106 0.894 15 N -0.311 5.311 16 C -0.071 4.071 17 C -0.143 4.143 18 C -0.015 4.015 19 C -0.555 4.555 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.177 0.823 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.622 7.619 -23.419 25.502 hybrid contribution -0.361 0.666 0.982 1.240 sum -6.983 8.285 -22.437 24.917 Atomic orbital electron populations 1.20667 0.89779 1.02820 1.03112 1.20036 0.97052 0.91222 1.00310 1.20778 0.91821 0.98234 1.01436 1.20927 0.92424 0.87163 1.05721 1.98371 1.76875 1.31963 1.96943 1.20835 1.00469 0.89657 1.00299 1.21173 0.93815 0.97228 1.00347 1.18288 0.89274 0.85762 1.00554 1.86278 1.70178 1.31061 1.35931 1.22607 0.99353 0.94199 0.84678 1.21630 0.93853 0.99657 1.04207 1.21328 0.98188 0.99139 0.95438 1.20805 0.98175 0.86148 0.93241 0.89370 1.60923 1.11557 1.54041 1.04624 1.22161 0.98632 0.97753 0.88583 1.21595 0.99289 0.98460 0.94965 1.19063 0.95661 0.96732 0.90074 1.21302 1.20817 1.20143 0.93213 0.92637 1.25026 0.95139 0.95585 0.98785 1.69980 1.28359 1.35259 1.20046 0.86554 0.78954 0.80526 0.82086 1.19717 1.21047 1.21075 0.90463 0.91509 0.90876 0.84645 0.84503 0.92916 0.88327 0.91093 0.88654 0.92391 0.90661 0.82259 0.91648 0.95866 0.93740 0.92625 0.96618 0.96872 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.80 36.00 0.35 -0.59 16 2 C -0.09 -0.95 5.90 -104.39 -0.62 -1.57 16 3 C -0.10 -1.12 9.48 -39.56 -0.37 -1.49 16 4 C -0.04 -0.41 6.33 -39.43 -0.25 -0.66 16 5 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 6 C -0.09 -1.11 9.48 -39.59 -0.38 -1.49 16 7 C -0.12 -1.53 4.62 -104.31 -0.48 -2.01 16 8 C 0.11 1.30 5.25 -39.42 -0.21 1.09 16 9 O -0.32 -3.79 7.03 -19.95 -0.14 -3.93 16 10 C 0.07 0.59 6.49 36.37 0.24 0.83 16 11 C -0.16 -1.45 5.28 -27.97 -0.15 -1.60 16 12 C -0.10 -1.03 5.54 -27.26 -0.15 -1.18 16 13 C 0.13 1.58 2.69 -68.43 -0.18 1.40 16 14 H 0.09 1.09 7.60 -51.93 -0.39 0.70 16 15 N -0.68 -10.21 4.91 -107.48 -0.53 -10.73 16 16 C 0.06 1.04 5.49 -3.82 -0.02 1.02 16 17 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 23 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 29 H 0.07 0.61 7.51 -51.93 -0.39 0.22 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.14 1.47 7.99 -52.49 -0.42 1.05 16 32 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.08 6.80 -51.93 -0.35 0.73 16 36 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.35 5.50 5.32 -39.29 -0.21 5.29 16 39 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 40 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -31.30 370.80 -10.97 -42.27 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.19 Total: 0.91 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.91 Total: -22.09 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.21 Total: -37.61 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.14 Total: -3.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.30 -10.97 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.607 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds