Wall clock time and date at job start Tue Mar 31 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38186 * 120.13586 * 2 1 4 4 C 1.38353 * 120.25477 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 119.99714 * 179.47936 * 4 3 2 6 6 C 1.38541 * 120.00029 * 359.45412 * 4 3 2 7 7 C 1.37923 * 119.61283 * 0.10730 * 6 4 3 8 8 C 1.38010 * 120.66616 * 0.83919 * 7 6 4 9 9 O 1.36066 * 120.55626 * 178.34508 * 8 7 6 10 10 C 1.43178 * 115.59589 * 289.10302 * 9 8 7 11 11 C 1.51438 * 110.85836 * 86.55293 * 10 9 8 12 12 C 1.52114 * 113.46586 * 294.76459 * 11 10 9 13 13 C 1.51737 * 120.09329 * 181.05419 * 7 6 4 14 14 H 1.08999 * 109.59319 * 7.73840 * 13 7 6 15 15 N 1.46899 * 109.59795 * 128.20830 * 13 7 6 16 16 C 1.46897 * 110.99888 * 274.22285 * 15 13 7 17 17 C 1.53005 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47008 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47239 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99469 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00436 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47217 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47136 * 120.00356 * 23 21 19 26 26 H 1.48502 * 109.46916 * 239.99709 * 23 21 19 27 27 H 1.09005 * 109.47125 * 270.02358 * 1 2 3 28 28 H 1.09007 * 109.46929 * 30.01683 * 1 2 3 29 29 H 1.08996 * 109.47456 * 150.01551 * 1 2 3 30 30 H 1.07996 * 119.87322 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.19831 * 180.08189 * 6 4 3 32 32 H 1.09003 * 109.20047 * 326.20135 * 10 9 8 33 33 H 1.09000 * 109.20028 * 206.91583 * 10 9 8 34 34 H 1.09002 * 108.68593 * 173.73146 * 11 10 9 35 35 H 1.09003 * 108.57783 * 55.71918 * 11 10 9 36 36 H 1.08997 * 109.20060 * 307.39287 * 12 11 10 37 37 H 1.09005 * 109.20341 * 188.10260 * 12 11 10 38 38 H 1.00899 * 110.99905 * 38.17715 * 15 13 7 39 39 H 1.09003 * 109.46887 * 299.99606 * 16 15 13 40 40 H 1.08998 * 109.47201 * 60.00123 * 16 15 13 41 41 H 1.09003 * 109.46787 * 299.99382 * 17 16 15 42 42 H 1.08998 * 109.47318 * 59.99910 * 17 16 15 43 43 H 1.09003 * 109.46844 * 299.99350 * 18 17 16 44 44 H 1.08998 * 109.47152 * 59.99811 * 18 17 16 45 45 H 0.97005 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1951 0.0000 4 6 3.5843 1.1980 -0.0005 5 17 4.4491 2.7032 -0.0142 6 6 4.2795 -0.0003 0.0104 7 6 3.5843 -1.1915 0.0194 8 6 2.2043 -1.2013 0.0004 9 8 1.5212 -2.3778 -0.0244 10 6 1.5928 -3.1089 -1.2534 11 6 2.8171 -3.9998 -1.2803 12 6 4.1280 -3.2282 -1.2779 13 6 4.3344 -2.5100 0.0556 14 1 5.3971 -2.3218 0.2088 15 7 3.8155 -3.3424 1.1491 16 6 4.4833 -3.0213 2.4175 17 6 3.9180 -3.9069 3.5298 18 6 4.6140 -3.5730 4.8508 19 6 4.0568 -4.4448 5.9466 20 1 3.2833 -5.1646 5.7231 21 6 4.5344 -4.3234 7.2342 22 7 5.4767 -3.4472 7.5062 23 14 3.8432 -5.4035 8.5925 24 1 2.8013 -6.2998 8.0303 25 1 4.9353 -6.2213 9.1787 26 1 3.2440 -4.5482 9.6484 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6609 2.1304 0.0004 31 1 5.3595 -0.0018 0.0113 32 1 1.6421 -2.4068 -2.0858 33 1 0.6992 -3.7243 -1.3570 34 1 2.7783 -4.6196 -2.1761 35 1 2.7929 -4.6498 -0.4056 36 1 4.1126 -2.4929 -2.0824 37 1 4.9526 -3.9217 -1.4428 38 1 2.8146 -3.2463 1.2330 39 1 5.5541 -3.2005 2.3198 40 1 4.3111 -1.9736 2.6638 41 1 2.8472 -3.7281 3.6277 42 1 4.0906 -4.9545 3.2833 43 1 5.6847 -3.7521 4.7527 44 1 4.4419 -2.5254 5.0975 45 1 5.8126 -3.3614 8.4121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179108881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:17 Heat of formation + Delta-G solvation = -56.855606 kcal Electronic energy + Delta-G solvation = -25490.367211 eV Core-core repulsion = 21918.090587 eV Total energy + Delta-G solvation = -3572.276624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02467 -38.94161 -38.02766 -37.33045 -36.13025 -34.58081 -33.48118 -32.79423 -31.24999 -28.67707 -28.01922 -27.42691 -25.61056 -24.26982 -22.72490 -22.40029 -21.93918 -20.77584 -18.85006 -18.51451 -17.86429 -17.28041 -16.66484 -16.53317 -16.26863 -15.83144 -15.77373 -15.35171 -15.03629 -14.51857 -14.46032 -14.38625 -14.09960 -13.81194 -13.73937 -13.51296 -13.45990 -13.28464 -13.01488 -12.82038 -12.70953 -12.53082 -12.46026 -12.23571 -12.03079 -11.78200 -11.66018 -11.52606 -11.48528 -11.37367 -11.06769 -10.92916 -10.56698 -9.85844 -9.45578 -9.37269 -8.20519 -6.31842 -0.07952 0.10946 1.05248 1.39512 1.40048 1.53908 2.23670 2.40829 2.74003 3.12487 3.26269 3.46210 3.66839 3.95183 4.02656 4.04020 4.08185 4.17532 4.24192 4.31317 4.38800 4.45098 4.51604 4.56783 4.67287 4.70582 4.77907 4.84542 4.92367 4.95765 5.03662 5.07176 5.08848 5.11526 5.19579 5.22914 5.24394 5.34844 5.46933 5.50935 5.56920 5.73255 5.84386 6.06458 6.26481 6.41375 6.50979 6.84791 7.37485 8.91779 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.003269 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.083164 B = 8563.042104 C = 9562.002022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.093 4.093 3 C -0.104 4.104 4 C -0.046 4.046 5 Cl -0.067 7.067 6 C -0.104 4.104 7 C -0.136 4.136 8 C 0.096 3.904 9 O -0.333 6.333 10 C 0.062 3.938 11 C -0.153 4.153 12 C -0.099 4.099 13 C 0.124 3.876 14 H 0.085 0.915 15 N -0.671 5.671 16 C 0.072 3.928 17 C -0.089 4.089 18 C 0.027 3.973 19 C -0.542 4.542 20 H 0.059 0.941 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.353 0.647 39 H 0.064 0.936 40 H 0.010 0.990 41 H 0.042 0.958 42 H 0.056 0.944 43 H -0.007 1.007 44 H -0.014 1.014 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 7.558 -24.583 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.072 4.072 5 Cl -0.038 7.038 6 C -0.123 4.123 7 C -0.138 4.138 8 C 0.051 3.949 9 O -0.250 6.250 10 C -0.012 4.012 11 C -0.191 4.191 12 C -0.137 4.137 13 C 0.014 3.986 14 H 0.103 0.897 15 N -0.306 5.306 16 C -0.057 4.057 17 C -0.127 4.127 18 C -0.011 4.011 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.176 0.824 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.011 0.989 44 H 0.004 0.996 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.044 7.106 -24.462 26.713 hybrid contribution 0.097 0.869 1.256 1.530 sum -7.948 7.974 -23.206 25.793 Atomic orbital electron populations 1.20707 0.88144 1.04093 1.03181 1.20336 0.98334 0.90901 0.99802 1.21045 0.91632 0.99048 1.00511 1.21048 0.92930 0.87224 1.06018 1.98368 1.76878 1.31585 1.96945 1.20963 1.00888 0.89885 1.00562 1.21160 0.94132 0.97120 1.01418 1.18482 0.89334 0.86420 1.00636 1.86253 1.70114 1.31123 1.37498 1.22817 1.00038 0.94349 0.83982 1.21614 0.93602 0.99502 1.04352 1.21315 0.98916 0.99385 0.94060 1.20897 0.97867 0.86450 0.93387 0.89705 1.60890 1.11281 1.54836 1.03563 1.21841 0.98598 0.96009 0.89235 1.21336 0.98606 0.99103 0.93668 1.18954 0.94724 0.94837 0.92551 1.21714 1.21240 1.20706 0.94354 0.92256 1.26003 0.95293 0.96976 1.01603 1.70111 1.29571 1.36815 1.20973 0.85374 0.78515 0.78597 0.78424 1.18537 1.20177 1.20310 0.90864 0.89409 0.90487 0.82714 0.84042 0.91815 0.86363 0.88689 0.90777 0.91133 0.90210 0.82387 0.91723 0.97210 0.93903 0.92520 0.98877 0.99578 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.80 71.23 0.70 -0.96 16 2 C -0.09 -1.95 5.90 -19.72 -0.12 -2.07 16 3 C -0.10 -2.10 9.48 22.28 0.21 -1.89 16 4 C -0.05 -1.02 6.33 22.37 0.14 -0.88 16 5 Cl -0.07 -1.39 28.96 -2.72 -0.08 -1.47 16 6 C -0.10 -2.45 9.48 22.27 0.21 -2.24 16 7 C -0.14 -3.32 4.62 -19.66 -0.09 -3.41 16 8 C 0.10 2.27 5.25 22.38 0.12 2.39 16 9 O -0.33 -7.57 7.03 -94.30 -0.66 -8.23 16 10 C 0.06 0.98 6.49 71.47 0.46 1.45 16 11 C -0.15 -2.57 5.28 29.79 0.16 -2.41 16 12 C -0.10 -1.83 5.54 30.25 0.17 -1.66 16 13 C 0.12 3.04 2.69 44.45 0.12 3.16 16 14 H 0.08 2.10 7.60 -2.39 -0.02 2.08 16 15 N -0.67 -20.17 4.91 -493.97 -2.43 -22.60 16 16 C 0.07 2.69 5.49 86.31 0.47 3.17 16 17 C -0.09 -3.95 5.41 30.60 0.17 -3.78 16 18 C 0.03 1.50 4.97 29.85 0.15 1.65 16 19 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 20 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 21 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 22 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 23 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.09 0.99 8.09 -2.38 -0.02 0.97 16 29 H 0.08 1.15 7.51 -2.39 -0.02 1.13 16 30 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.14 3.06 7.99 -2.91 -0.02 3.04 16 32 H 0.06 0.88 7.90 -2.39 -0.02 0.86 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.59 6.80 -2.39 -0.02 1.58 16 36 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.35 10.89 5.32 -89.69 -0.48 10.41 16 39 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 40 H 0.01 0.38 8.04 -2.39 -0.02 0.36 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 45 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -67.65 370.80 3.21 -64.44 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.50 Total: 17.62 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 3.56 Total: -39.02 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.14 Total: -80.78 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.66 Total: -8.23 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -67.65 3.21 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.589 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds