Wall clock time and date at job start Tue Mar 31 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47057 * 300.00191 * 3 2 1 6 6 H 1.48508 * 109.46895 * 59.99739 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99858 * 359.72927 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47676 * 324.99283 * 16 15 13 18 18 C 1.50700 * 109.47462 * 84.99733 * 16 15 13 19 19 N 1.34776 * 120.00101 * 179.97438 * 18 16 15 20 20 O 1.21285 * 119.99844 * 359.97438 * 18 16 15 21 21 C 1.50706 * 109.46843 * 204.99675 * 16 15 13 22 22 C 1.38245 * 119.97327 * 319.72639 * 21 16 15 23 23 C 1.38203 * 120.02350 * 179.72846 * 22 21 16 24 24 C 1.38453 * 119.97399 * 0.52285 * 23 22 21 25 25 F 1.35096 * 120.02894 * 179.72948 * 24 23 22 26 26 C 1.38466 * 119.94774 * 359.74694 * 24 23 22 27 27 C 1.38196 * 119.97446 * 0.02562 * 26 24 23 28 28 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 30 30 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 31 31 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 32 32 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 33 33 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 34 34 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 35 35 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 36 36 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 37 37 H 0.96994 * 120.00082 * 0.02562 * 19 18 16 38 38 H 0.96999 * 120.00033 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.98589 * 359.97313 * 22 21 16 40 40 H 1.08001 * 120.01080 * 180.29670 * 23 22 21 41 41 H 1.08000 * 120.00998 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.98508 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7876 -7.5935 0.0058 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4584 -9.8402 0.5872 18 6 2.0798 -10.2063 -1.4213 19 7 1.6172 -11.4481 -1.6671 20 8 2.2622 -9.4344 -2.3388 21 6 3.4198 -10.6810 0.5875 22 6 4.7540 -10.4831 0.2842 23 6 5.7176 -11.3081 0.8326 24 6 5.3455 -12.3398 1.6775 25 9 6.2861 -13.1503 2.2099 26 6 4.0085 -12.5406 1.9762 27 6 3.0470 -11.7114 1.4303 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8720 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8534 -5.0451 -0.8887 34 1 0.8538 -5.0446 0.8914 35 1 3.3860 -5.9234 -0.0041 36 1 3.8125 -8.2185 -0.0103 37 1 1.4710 -12.0653 -0.9333 38 1 1.4298 -11.7244 -2.5779 39 1 5.0436 -9.6809 -0.3785 40 1 6.7603 -11.1502 0.5992 41 1 3.7170 -13.3453 2.6348 42 1 2.0040 -11.8681 1.6629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183928460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:47 Heat of formation + Delta-G solvation = -98.470261 kcal Electronic energy + Delta-G solvation = -25997.958547 eV Core-core repulsion = 21892.000657 eV Total energy + Delta-G solvation = -4105.957890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.40981 -40.97184 -39.36802 -38.90663 -35.62277 -34.79246 -33.99682 -33.28067 -31.82643 -31.61349 -30.68370 -27.50294 -26.20032 -23.82139 -23.04421 -22.73787 -21.14678 -20.63585 -20.26626 -18.62338 -18.06190 -17.98136 -17.45259 -16.66414 -16.50881 -16.13767 -16.03781 -15.59857 -15.30045 -14.94885 -14.61224 -14.47631 -14.34752 -14.14585 -14.00648 -13.79652 -13.72428 -13.19294 -12.84860 -12.27508 -12.16394 -11.77034 -11.71323 -11.60350 -10.90550 -10.69594 -10.61737 -10.54543 -10.17562 -9.96977 -9.82787 -9.73545 -9.45748 -9.38459 -9.11154 -9.07866 -8.62083 -8.34887 -5.99401 -4.02185 0.43083 0.60560 2.33008 2.54839 2.84943 3.27688 3.31718 3.39116 3.42789 3.51110 3.67670 3.95984 4.09629 4.29160 4.34448 4.47415 4.60125 4.63677 4.68071 4.98271 5.26890 5.29371 5.36420 5.51500 5.57873 5.71826 5.77188 5.85773 6.13881 6.23322 6.24018 6.48584 6.54942 6.66595 6.78427 6.99338 7.02857 7.05637 7.67235 7.80155 7.97378 7.99958 8.09924 8.40890 8.71431 9.04777 9.61789 11.11973 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002068 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.129386 B =13536.713013 C =14384.422080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.737 5.737 13 C 0.710 3.290 14 O -0.590 6.590 15 N -0.729 5.729 16 C 0.193 3.807 17 H 0.127 0.873 18 C 0.510 3.490 19 N -0.853 5.853 20 O -0.521 6.521 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.146 4.146 24 C 0.105 3.895 25 F -0.137 7.137 26 C -0.148 4.148 27 C -0.075 4.075 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.399 0.601 37 H 0.399 0.601 38 H 0.403 0.597 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -31.079 2.994 32.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.390 5.390 13 C 0.410 3.590 14 O -0.468 6.468 15 N -0.385 5.385 16 C 0.082 3.918 17 H 0.144 0.856 18 C 0.291 3.709 19 N -0.417 5.417 20 O -0.395 6.395 21 C -0.107 4.107 22 C -0.094 4.094 23 C -0.165 4.165 24 C 0.086 3.914 25 F -0.116 7.116 26 C -0.167 4.167 27 C -0.094 4.094 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.227 0.773 38 H 0.234 0.766 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.887 -30.473 2.553 31.845 hybrid contribution 1.356 0.503 0.032 1.447 sum 10.243 -29.970 2.585 31.778 Atomic orbital electron populations 1.69979 1.06042 1.26538 1.50720 1.25039 0.94867 0.99311 0.95349 0.86525 0.80034 0.83782 0.77569 1.19781 1.21021 1.21029 1.21244 0.93022 0.90932 1.50682 0.92601 1.19035 0.93873 0.90811 0.97710 1.21893 0.99799 0.93280 1.00865 1.21537 0.91262 0.84027 1.01953 1.45307 1.10551 1.04209 1.78948 1.15868 0.85061 0.80753 0.77363 1.90911 1.14012 1.84009 1.57851 1.44725 1.09296 1.03240 1.81268 1.19326 0.97721 0.81213 0.93491 0.85592 1.20978 0.76419 0.81825 0.91634 1.43769 1.70084 1.15048 1.12836 1.90790 1.51013 1.51942 1.45710 1.19680 0.93961 0.97421 0.99653 1.20873 0.91637 0.98676 0.98224 1.21170 1.01294 0.95475 0.98578 1.17801 0.86227 0.91036 0.96372 1.91527 1.64229 1.71335 1.84505 1.21158 0.91043 1.01923 1.02536 1.20891 1.00155 0.93394 0.94935 0.93007 0.96214 0.96225 0.92750 0.92711 0.91881 0.91850 0.77243 0.76586 0.77271 0.76612 0.84655 0.84176 0.84104 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 12 N -0.74 -11.11 5.56 -65.22 -0.36 -11.47 16 13 C 0.71 11.16 8.39 -86.91 -0.73 10.43 16 14 O -0.59 -11.59 16.01 5.29 0.08 -11.51 16 15 N -0.73 -8.12 4.56 -60.96 -0.28 -8.40 16 16 C 0.19 1.78 2.58 -70.23 -0.18 1.60 16 17 H 0.13 1.17 7.44 -51.93 -0.39 0.79 16 18 C 0.51 5.54 7.44 -10.99 -0.08 5.45 16 19 N -0.85 -5.48 8.77 31.22 0.27 -5.21 16 20 O -0.52 -8.24 17.16 5.55 0.10 -8.15 16 21 C -0.11 -0.68 4.74 -104.62 -0.50 -1.17 16 22 C -0.08 -0.47 9.04 -39.59 -0.36 -0.83 16 23 C -0.15 -0.87 10.03 -39.52 -0.40 -1.27 16 24 C 0.10 0.68 7.30 -39.42 -0.29 0.39 16 25 F -0.14 -1.06 17.27 2.25 0.04 -1.02 16 26 C -0.15 -0.74 10.03 -39.51 -0.40 -1.13 16 27 C -0.08 -0.35 9.50 -39.60 -0.38 -0.72 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.39 4.74 8.49 -40.82 -0.35 4.39 16 36 H 0.40 3.38 6.90 -40.82 -0.28 3.10 16 37 H 0.40 1.30 8.55 -40.82 -0.35 0.95 16 38 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 39 H 0.14 0.74 6.93 -52.48 -0.36 0.38 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.14 0.31 8.04 -52.49 -0.42 -0.11 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -37.85 369.29 -8.32 -46.17 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.44 Total: 4.03 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.02 Total: -0.35 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.37 Total: -51.39 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.18 Total: -19.66 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.85 -8.32 -46.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.303 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds