Wall clock time and date at job start Tue Mar 31 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47057 * 300.00191 * 3 2 1 6 6 H 1.48508 * 109.46895 * 59.99739 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99858 * 359.72927 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47676 * 324.99283 * 16 15 13 18 18 C 1.50700 * 109.47462 * 84.99733 * 16 15 13 19 19 N 1.34776 * 120.00101 * 179.97438 * 18 16 15 20 20 O 1.21285 * 119.99844 * 359.97438 * 18 16 15 21 21 C 1.50706 * 109.46843 * 204.99675 * 16 15 13 22 22 C 1.38245 * 119.97327 * 319.72639 * 21 16 15 23 23 C 1.38203 * 120.02350 * 179.72846 * 22 21 16 24 24 C 1.38453 * 119.97399 * 0.52285 * 23 22 21 25 25 F 1.35096 * 120.02894 * 179.72948 * 24 23 22 26 26 C 1.38466 * 119.94774 * 359.74694 * 24 23 22 27 27 C 1.38196 * 119.97446 * 0.02562 * 26 24 23 28 28 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 30 30 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 31 31 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 32 32 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 33 33 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 34 34 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 35 35 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 36 36 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 37 37 H 0.96994 * 120.00082 * 0.02562 * 19 18 16 38 38 H 0.96999 * 120.00033 * 179.97438 * 19 18 16 39 39 H 1.08004 * 119.98589 * 359.97313 * 22 21 16 40 40 H 1.08001 * 120.01080 * 180.29670 * 23 22 21 41 41 H 1.08000 * 120.00998 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.98508 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7876 -7.5935 0.0058 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4584 -9.8402 0.5872 18 6 2.0798 -10.2063 -1.4213 19 7 1.6172 -11.4481 -1.6671 20 8 2.2622 -9.4344 -2.3388 21 6 3.4198 -10.6810 0.5875 22 6 4.7540 -10.4831 0.2842 23 6 5.7176 -11.3081 0.8326 24 6 5.3455 -12.3398 1.6775 25 9 6.2861 -13.1503 2.2099 26 6 4.0085 -12.5406 1.9762 27 6 3.0470 -11.7114 1.4303 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8720 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8534 -5.0451 -0.8887 34 1 0.8538 -5.0446 0.8914 35 1 3.3860 -5.9234 -0.0041 36 1 3.8125 -8.2185 -0.0103 37 1 1.4710 -12.0653 -0.9333 38 1 1.4298 -11.7244 -2.5779 39 1 5.0436 -9.6809 -0.3785 40 1 6.7603 -11.1502 0.5992 41 1 3.7170 -13.3453 2.6348 42 1 2.0040 -11.8681 1.6629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183928460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:46 Heat of formation + Delta-G solvation = -127.944420 kcal Electronic energy + Delta-G solvation = -25999.236642 eV Core-core repulsion = 21892.000657 eV Total energy + Delta-G solvation = -4107.235985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92379 -41.82609 -40.37077 -39.63072 -37.07170 -35.87251 -35.19041 -34.76953 -33.12974 -32.21220 -31.73680 -28.78034 -27.54062 -24.95654 -24.17540 -23.30712 -22.31259 -22.15974 -21.27713 -19.61982 -18.81633 -18.67785 -18.47411 -18.16062 -17.28874 -17.05556 -16.71704 -16.62459 -16.55923 -16.37786 -15.58262 -15.53591 -15.50594 -15.27141 -14.95833 -14.50222 -14.39454 -14.25951 -13.90416 -13.71245 -13.50508 -13.36243 -12.77931 -12.76794 -12.53711 -12.32606 -12.01699 -11.68728 -11.67317 -11.56589 -11.33529 -11.14557 -10.70151 -10.54952 -10.46062 -10.12965 -9.90255 -9.65099 -8.18461 -6.29702 -0.04871 0.21084 1.42132 1.42602 1.47132 1.55720 1.57806 2.05388 2.42691 2.43819 2.71560 3.15246 3.19728 3.30829 3.37301 3.68020 3.90087 4.01024 4.08596 4.17756 4.24970 4.26028 4.44431 4.57627 4.83533 4.91053 4.97387 4.98989 5.10335 5.14546 5.18066 5.20136 5.38310 5.46892 5.54958 5.72739 5.80510 5.85565 5.85705 5.89931 6.23946 6.37889 6.87591 7.01326 7.27677 7.39618 7.51431 8.93960 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002068 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.129386 B =13536.713013 C =14384.422080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.150 3.850 12 N -0.728 5.728 13 C 0.706 3.294 14 O -0.633 6.633 15 N -0.713 5.713 16 C 0.194 3.806 17 H 0.128 0.872 18 C 0.505 3.495 19 N -0.830 5.830 20 O -0.579 6.579 21 C -0.110 4.110 22 C -0.081 4.081 23 C -0.150 4.150 24 C 0.090 3.910 25 F -0.147 7.147 26 C -0.144 4.144 27 C -0.066 4.066 28 H 0.263 0.737 29 H -0.010 1.010 30 H -0.005 1.005 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.413 0.587 37 H 0.417 0.583 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -32.263 3.786 34.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.026 3.974 12 N -0.383 5.383 13 C 0.406 3.594 14 O -0.514 6.514 15 N -0.370 5.370 16 C 0.084 3.916 17 H 0.146 0.854 18 C 0.287 3.713 19 N -0.394 5.394 20 O -0.457 6.457 21 C -0.111 4.111 22 C -0.100 4.100 23 C -0.169 4.169 24 C 0.071 3.929 25 F -0.126 7.126 26 C -0.162 4.162 27 C -0.084 4.084 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.013 0.987 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.701 -31.748 3.367 33.672 hybrid contribution 0.788 0.740 -0.203 1.100 sum 11.489 -31.008 3.164 33.219 Atomic orbital electron populations 1.70122 1.07930 1.27708 1.51798 1.26043 0.95780 1.03598 0.94856 0.85349 0.79177 0.78594 0.77602 1.18209 1.20671 1.20494 1.21705 0.93746 0.91970 1.50245 0.91529 1.18948 0.94457 0.92928 0.95126 1.21592 0.98458 0.91661 1.02126 1.21091 0.91302 0.84529 1.00496 1.44976 1.10917 1.03492 1.78937 1.16035 0.84961 0.81368 0.77056 1.90878 1.16071 1.84687 1.59752 1.44580 1.09482 1.03227 1.79685 1.19441 0.98821 0.80443 0.92862 0.85403 1.21279 0.75940 0.82394 0.91640 1.43588 1.67929 1.13936 1.13994 1.90766 1.53892 1.53778 1.47311 1.19498 0.93174 0.97753 1.00658 1.20938 0.91678 0.98951 0.98392 1.21278 1.01849 0.95314 0.98458 1.18083 0.86783 0.91244 0.96813 1.91504 1.64726 1.71645 1.84714 1.21395 0.90313 1.02226 1.02312 1.21146 1.01549 0.92146 0.93568 0.92830 0.99111 0.98692 0.91053 0.91647 0.93984 0.92912 0.75220 0.74950 0.75143 0.75921 0.84366 0.83209 0.82097 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.10 -3.97 5.27 30.60 0.16 -3.81 16 11 C 0.15 5.58 5.67 86.38 0.49 6.07 16 12 N -0.73 -21.51 5.56 -478.52 -2.66 -24.17 16 13 C 0.71 21.99 8.39 179.05 1.50 23.49 16 14 O -0.63 -25.17 16.01 -3.99 -0.06 -25.23 16 15 N -0.71 -15.23 4.56 -465.03 -2.12 -17.35 16 16 C 0.19 3.34 2.58 43.50 0.11 3.45 16 17 H 0.13 2.20 7.44 -2.39 -0.02 2.18 16 18 C 0.50 10.56 7.44 87.66 0.65 11.22 16 19 N -0.83 -9.34 8.77 -173.53 -1.52 -10.87 16 20 O -0.58 -18.44 17.16 -3.04 -0.05 -18.49 16 21 C -0.11 -1.17 4.74 -19.86 -0.09 -1.27 16 22 C -0.08 -0.87 9.04 22.26 0.20 -0.66 16 23 C -0.15 -1.54 10.03 22.31 0.22 -1.32 16 24 C 0.09 1.00 7.30 22.38 0.16 1.16 16 25 F -0.15 -2.06 17.27 44.97 0.78 -1.28 16 26 C -0.14 -1.04 10.03 22.31 0.22 -0.81 16 27 C -0.07 -0.41 9.50 22.26 0.21 -0.20 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.72 16 34 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.41 9.22 8.49 -92.71 -0.79 8.44 16 36 H 0.41 6.42 6.90 -92.71 -0.64 5.78 16 37 H 0.42 1.66 8.55 -92.71 -0.79 0.87 16 38 H 0.41 4.10 8.93 -92.71 -0.83 3.27 16 39 H 0.14 1.33 6.93 -2.91 -0.02 1.31 16 40 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 42 H 0.17 0.10 8.04 -2.91 -0.02 0.08 16 Total: -1.00 -83.98 369.29 -0.58 -84.56 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -1.94 Total: 15.30 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 4.69 Total: 8.67 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -6.02 Total: -109.83 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.12 Total: -43.72 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -83.98 -0.58 -84.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183928460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.380 kcal (2) G-P(sol) polarization free energy of solvation -83.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds