Wall clock time and date at job start Tue Mar 31 2020 13:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00335 * 2 1 4 4 H 1.48500 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47397 * 300.00587 * 3 2 1 6 6 H 1.48501 * 109.46973 * 59.99911 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47226 * 174.86403 * 9 7 2 11 11 H 1.08999 * 109.47217 * 54.20667 * 10 9 7 12 12 N 1.46504 * 109.46939 * 174.20647 * 10 9 7 13 13 C 1.34778 * 119.99747 * 278.67059 * 12 10 9 14 14 O 1.21639 * 120.00097 * 355.04759 * 13 12 10 15 15 C 1.46873 * 120.00003 * 175.04161 * 13 12 10 16 16 C 1.34506 * 120.00354 * 179.97438 * 15 13 12 17 17 C 1.47539 * 120.00322 * 180.02562 * 16 15 13 18 18 C 1.39968 * 120.58242 * 179.97438 * 17 16 15 19 19 C 1.38498 * 118.24271 * 180.02562 * 18 17 16 20 20 N 1.32333 * 119.19234 * 0.02562 * 19 18 17 21 21 C 1.31881 * 121.11100 * 359.97438 * 20 19 18 22 22 N 1.31573 * 121.94237 * 0.02562 * 21 20 19 23 23 C 1.50699 * 109.46871 * 294.20178 * 10 9 7 24 24 C 1.38233 * 120.00245 * 279.72635 * 23 10 9 25 25 C 1.38237 * 120.00030 * 179.81039 * 24 23 10 26 26 C 1.38228 * 119.99801 * 0.40055 * 25 24 23 27 27 C 1.38229 * 120.00382 * 359.85426 * 26 25 24 28 28 C 1.38236 * 120.00125 * 359.95560 * 27 26 25 29 29 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47100 * 54.86144 * 9 7 2 31 31 H 1.09009 * 109.47403 * 294.86639 * 9 7 2 32 32 H 0.96998 * 120.00076 * 98.67502 * 12 10 9 33 33 H 1.08004 * 120.00323 * 0.02562 * 15 13 12 34 34 H 1.08004 * 119.99323 * 0.02562 * 16 15 13 35 35 H 1.08005 * 120.88221 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.40460 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.02939 * 180.02562 * 21 20 19 38 38 H 1.08008 * 119.99715 * 0.02562 * 24 23 10 39 39 H 1.08006 * 119.99752 * 180.22793 * 25 24 23 40 40 H 1.08006 * 119.99868 * 179.83374 * 26 25 24 41 41 H 1.08001 * 120.00143 * 179.97438 * 27 26 25 42 42 H 1.07992 * 120.00473 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2402 -3.6591 -0.1303 11 1 2.9962 -3.5811 0.6510 12 7 1.5238 -4.9295 0.0084 13 6 1.2211 -5.4022 1.2337 14 8 1.6202 -4.8215 2.2253 15 6 0.4091 -6.6182 1.3718 16 6 0.1074 -7.0903 2.5946 17 6 -0.7078 -8.3121 2.7334 18 6 -1.0285 -8.8143 3.9999 19 6 -1.7960 -9.9648 4.0737 20 7 -2.1967 -10.5462 2.9545 21 6 -1.8777 -10.0482 1.7758 22 7 -1.1510 -8.9581 1.6543 23 6 2.9060 -3.6028 -1.4811 24 6 2.2498 -4.0899 -2.5960 25 6 2.8590 -4.0346 -3.8356 26 6 4.1276 -3.4997 -3.9590 27 6 4.7859 -3.0174 -2.8433 28 6 4.1752 -3.0691 -1.6043 29 1 -0.4850 0.8401 0.0004 30 1 0.5568 -2.5179 -0.8406 31 1 0.6954 -2.5980 0.9321 32 1 1.2675 -5.4305 -0.7817 33 1 0.0549 -7.1340 0.4914 34 1 0.4619 -6.5747 3.4750 35 1 -0.6858 -8.3182 4.8960 36 1 -2.0643 -10.3823 5.0330 37 1 -2.2231 -10.5499 0.8840 38 1 1.2598 -4.5105 -2.4990 39 1 2.3448 -4.4118 -4.7073 40 1 4.6047 -3.4589 -4.9271 41 1 5.7773 -2.5999 -2.9397 42 1 4.6896 -2.6927 -0.7325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185111804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:02 Heat of formation + Delta-G solvation = 51.557392 kcal Electronic energy + Delta-G solvation = -25248.836590 eV Core-core repulsion = 21580.153612 eV Total energy + Delta-G solvation = -3668.682978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16092 -39.70155 -38.54656 -35.44234 -34.86161 -32.98674 -32.84303 -31.59619 -30.82293 -30.41289 -28.62282 -25.98034 -24.75889 -24.43049 -22.43562 -22.29538 -21.78612 -19.85752 -19.53215 -18.14010 -17.20332 -16.98128 -16.48807 -15.94918 -15.75073 -15.23433 -15.07973 -14.78215 -14.62513 -14.23060 -14.16235 -13.95309 -13.81292 -13.21965 -12.97054 -12.81797 -12.50122 -12.19368 -12.15633 -11.60157 -11.51954 -11.16312 -11.15743 -10.87380 -10.72500 -10.64220 -10.36436 -10.05076 -9.95753 -9.68599 -9.57751 -9.14617 -9.12375 -8.55413 -8.48137 -8.35318 -8.04927 -6.00254 -4.01522 0.13104 0.68410 1.79373 1.80977 1.84819 3.31991 3.38267 3.40722 3.44452 3.49453 3.71978 3.75606 3.88035 4.20023 4.29496 4.47788 4.68903 4.75666 5.08666 5.11968 5.20723 5.23835 5.27870 5.36294 5.38293 5.48035 5.51538 5.90273 5.97890 6.02423 6.06606 6.14280 6.24039 6.37683 6.49619 6.69724 6.71092 6.78398 6.85641 6.89834 7.14303 7.42461 7.60729 7.67463 7.77423 7.94677 7.98611 8.34657 8.59593 9.02497 9.61444 11.11481 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002892 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.968795 B = 9679.999738 C =11198.933661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.180 3.820 11 H 0.087 0.913 12 N -0.713 5.713 13 C 0.536 3.464 14 O -0.533 6.533 15 C -0.125 4.125 16 C -0.071 4.071 17 C 0.204 3.796 18 C -0.211 4.211 19 C 0.149 3.851 20 N -0.528 5.528 21 C 0.298 3.702 22 N -0.515 5.515 23 C -0.048 4.048 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.394 0.606 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.198 0.802 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -18.479 0.313 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.077 3.923 11 H 0.105 0.895 12 N -0.363 5.363 13 C 0.322 3.678 14 O -0.411 6.411 15 C -0.148 4.148 16 C -0.091 4.091 17 C 0.060 3.940 18 C -0.233 4.233 19 C -0.017 4.017 20 N -0.242 5.242 21 C 0.010 3.990 22 N -0.229 5.229 23 C -0.048 4.048 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.153 4.153 27 C -0.139 4.139 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.229 0.771 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.214 0.786 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.546 -18.393 0.198 18.402 hybrid contribution 0.373 1.294 0.225 1.365 sum 0.919 -17.099 0.423 17.129 Atomic orbital electron populations 1.69973 1.06033 1.26461 1.50828 1.24950 0.94792 0.99147 0.95292 0.86556 0.80193 0.83906 0.77510 1.19644 1.21097 1.21040 1.21074 0.93021 0.90337 1.50494 0.92331 1.19433 0.93557 0.90407 0.97942 1.20369 0.95520 0.83243 0.93130 0.89452 1.46207 1.58470 1.24152 1.07474 1.18318 0.80892 0.84682 0.83858 1.90825 1.53151 1.59855 1.37275 1.23425 0.96760 0.95357 0.99302 1.22089 0.95589 0.92087 0.99366 1.20483 0.91518 0.93054 0.88907 1.23058 1.01569 0.99122 0.99557 1.23215 0.90210 0.90655 0.97585 1.68379 1.22753 1.33606 0.99474 1.24944 0.89807 0.88793 0.95479 1.68515 1.11746 1.09232 1.33432 1.19881 0.93738 0.96191 0.95034 1.20847 0.99328 1.01148 0.92486 1.20979 0.95447 1.00484 0.96987 1.20984 0.95575 1.00563 0.98138 1.21042 0.99819 1.00178 0.92858 1.20973 0.94553 0.98392 0.97685 0.93089 0.95795 0.95721 0.77109 0.84220 0.83156 0.82941 0.81293 0.78599 0.86637 0.86671 0.86856 0.86600 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.51 -14.12 8.53 -34.44 -0.29 -14.41 16 8 H 0.06 1.56 6.79 -52.49 -0.36 1.21 16 9 C 0.02 0.62 4.68 -27.89 -0.13 0.49 16 10 C 0.18 3.67 2.19 -69.08 -0.15 3.52 16 11 H 0.09 1.91 7.49 -51.93 -0.39 1.53 16 12 N -0.71 -12.04 5.04 -56.19 -0.28 -12.33 16 13 C 0.54 9.30 7.62 -12.77 -0.10 9.20 16 14 O -0.53 -11.33 15.93 5.24 0.08 -11.25 16 15 C -0.12 -1.67 9.58 -37.41 -0.36 -2.03 16 16 C -0.07 -0.87 9.49 -37.11 -0.35 -1.22 16 17 C 0.20 2.26 6.74 -82.77 -0.56 1.70 16 18 C -0.21 -1.81 9.94 -38.84 -0.39 -2.20 16 19 C 0.15 1.19 11.30 -17.24 -0.19 1.00 16 20 N -0.53 -5.19 10.42 -14.64 -0.15 -5.35 16 21 C 0.30 2.88 12.27 -92.27 -1.13 1.75 16 22 N -0.51 -5.82 9.50 -11.25 -0.11 -5.93 16 23 C -0.05 -0.88 4.50 -104.62 -0.47 -1.35 16 24 C -0.12 -1.95 9.02 -39.58 -0.36 -2.31 16 25 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 26 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 27 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 28 C -0.10 -1.72 8.83 -39.58 -0.35 -2.07 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.70 8.08 -51.92 -0.42 0.28 16 32 H 0.39 5.41 6.85 -40.82 -0.28 5.13 16 33 H 0.14 1.62 7.45 -52.48 -0.39 1.23 16 34 H 0.15 1.80 7.52 -52.48 -0.39 1.41 16 35 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.69 6.95 -52.48 -0.36 1.32 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.12 2.11 7.84 -52.49 -0.41 1.69 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -34.76 369.09 -10.40 -45.16 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.10 Total: 6.50 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -6.12 Total: -13.05 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.19 Total: -49.71 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.76 -10.40 -45.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185111804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.718 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds