Wall clock time and date at job start Tue Mar 31 2020 13:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00335 * 2 1 4 4 H 1.48500 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47397 * 300.00587 * 3 2 1 6 6 H 1.48501 * 109.46973 * 59.99911 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00040 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47226 * 174.86403 * 9 7 2 11 11 H 1.08999 * 109.47217 * 54.20667 * 10 9 7 12 12 N 1.46504 * 109.46939 * 174.20647 * 10 9 7 13 13 C 1.34778 * 119.99747 * 278.67059 * 12 10 9 14 14 O 1.21639 * 120.00097 * 355.04759 * 13 12 10 15 15 C 1.46873 * 120.00003 * 175.04161 * 13 12 10 16 16 C 1.34506 * 120.00354 * 179.97438 * 15 13 12 17 17 C 1.47539 * 120.00322 * 180.02562 * 16 15 13 18 18 C 1.39968 * 120.58242 * 179.97438 * 17 16 15 19 19 C 1.38498 * 118.24271 * 180.02562 * 18 17 16 20 20 N 1.32333 * 119.19234 * 0.02562 * 19 18 17 21 21 C 1.31881 * 121.11100 * 359.97438 * 20 19 18 22 22 N 1.31573 * 121.94237 * 0.02562 * 21 20 19 23 23 C 1.50699 * 109.46871 * 294.20178 * 10 9 7 24 24 C 1.38233 * 120.00245 * 279.72635 * 23 10 9 25 25 C 1.38237 * 120.00030 * 179.81039 * 24 23 10 26 26 C 1.38228 * 119.99801 * 0.40055 * 25 24 23 27 27 C 1.38229 * 120.00382 * 359.85426 * 26 25 24 28 28 C 1.38236 * 120.00125 * 359.95560 * 27 26 25 29 29 H 0.97002 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47100 * 54.86144 * 9 7 2 31 31 H 1.09009 * 109.47403 * 294.86639 * 9 7 2 32 32 H 0.96998 * 120.00076 * 98.67502 * 12 10 9 33 33 H 1.08004 * 120.00323 * 0.02562 * 15 13 12 34 34 H 1.08004 * 119.99323 * 0.02562 * 16 15 13 35 35 H 1.08005 * 120.88221 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.40460 * 180.02562 * 19 18 17 37 37 H 1.07994 * 119.02939 * 180.02562 * 21 20 19 38 38 H 1.08008 * 119.99715 * 0.02562 * 24 23 10 39 39 H 1.08006 * 119.99752 * 180.22793 * 25 24 23 40 40 H 1.08006 * 119.99868 * 179.83374 * 26 25 24 41 41 H 1.08001 * 120.00143 * 179.97438 * 27 26 25 42 42 H 1.07992 * 120.00473 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2402 -3.6591 -0.1303 11 1 2.9962 -3.5811 0.6510 12 7 1.5238 -4.9295 0.0084 13 6 1.2211 -5.4022 1.2337 14 8 1.6202 -4.8215 2.2253 15 6 0.4091 -6.6182 1.3718 16 6 0.1074 -7.0903 2.5946 17 6 -0.7078 -8.3121 2.7334 18 6 -1.0285 -8.8143 3.9999 19 6 -1.7960 -9.9648 4.0737 20 7 -2.1967 -10.5462 2.9545 21 6 -1.8777 -10.0482 1.7758 22 7 -1.1510 -8.9581 1.6543 23 6 2.9060 -3.6028 -1.4811 24 6 2.2498 -4.0899 -2.5960 25 6 2.8590 -4.0346 -3.8356 26 6 4.1276 -3.4997 -3.9590 27 6 4.7859 -3.0174 -2.8433 28 6 4.1752 -3.0691 -1.6043 29 1 -0.4850 0.8401 0.0004 30 1 0.5568 -2.5179 -0.8406 31 1 0.6954 -2.5980 0.9321 32 1 1.2675 -5.4305 -0.7817 33 1 0.0549 -7.1340 0.4914 34 1 0.4619 -6.5747 3.4750 35 1 -0.6858 -8.3182 4.8960 36 1 -2.0643 -10.3823 5.0330 37 1 -2.2231 -10.5499 0.8840 38 1 1.2598 -4.5105 -2.4990 39 1 2.3448 -4.4118 -4.7073 40 1 4.6047 -3.4589 -4.9271 41 1 5.7773 -2.5999 -2.9397 42 1 4.6896 -2.6927 -0.7325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185111804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:01 Heat of formation + Delta-G solvation = 30.557977 kcal Electronic energy + Delta-G solvation = -25249.747193 eV Core-core repulsion = 21580.153612 eV Total energy + Delta-G solvation = -3669.593581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90583 -41.12419 -39.85109 -36.83576 -35.93131 -34.88278 -33.77352 -32.88355 -31.94967 -31.62490 -30.37730 -27.33991 -26.01608 -25.30185 -24.02557 -23.65816 -22.89944 -21.24116 -20.88862 -19.11775 -18.69655 -17.99576 -17.94893 -17.18669 -16.67922 -16.64024 -16.40138 -15.96901 -15.92015 -15.70474 -15.44306 -15.08728 -14.63058 -14.54796 -14.35525 -14.21916 -14.15148 -13.83689 -13.26589 -13.13929 -12.96738 -12.64597 -12.57794 -12.40417 -11.98597 -11.87916 -11.87319 -11.64306 -11.40441 -11.14349 -11.01981 -10.57936 -10.33786 -10.19620 -9.92283 -9.70240 -9.45244 -8.20182 -6.28724 -0.77025 0.01229 0.55220 0.61208 0.80512 1.37341 1.38139 1.50806 2.12125 2.28440 2.42021 2.87640 2.91033 3.01108 3.14784 3.26687 3.44226 3.81988 3.86656 4.04558 4.08630 4.10237 4.18883 4.24903 4.35539 4.50072 4.60539 4.70591 4.73085 4.79416 4.82845 5.06245 5.14479 5.15557 5.22478 5.28576 5.39530 5.46631 5.52798 5.65949 5.69695 5.74714 5.89806 5.97071 6.19861 6.22930 6.56450 6.83286 7.04972 7.22423 7.38585 8.92535 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002892 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.968795 B = 9679.999738 C =11198.933661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.039 3.961 10 C 0.197 3.803 11 H 0.063 0.937 12 N -0.705 5.705 13 C 0.533 3.467 14 O -0.582 6.582 15 C -0.143 4.143 16 C -0.047 4.047 17 C 0.176 3.824 18 C -0.202 4.202 19 C 0.151 3.849 20 N -0.539 5.539 21 C 0.289 3.711 22 N -0.532 5.532 23 C -0.074 4.074 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.121 4.121 29 H 0.262 0.738 30 H 0.002 0.998 31 H -0.020 1.020 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.178 0.822 36 H 0.207 0.793 37 H 0.222 0.778 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -19.747 -0.914 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.093 3.907 11 H 0.081 0.919 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.464 6.464 15 C -0.166 4.166 16 C -0.067 4.067 17 C 0.034 3.966 18 C -0.223 4.223 19 C -0.015 4.015 20 N -0.253 5.253 21 C 0.001 3.999 22 N -0.247 5.247 23 C -0.075 4.075 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.020 0.980 31 H -0.002 1.002 32 H 0.248 0.752 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.196 0.804 36 H 0.224 0.776 37 H 0.238 0.762 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.123 -19.691 -1.065 19.752 hybrid contribution 0.138 1.552 0.666 1.694 sum 1.260 -18.139 -0.399 18.187 Atomic orbital electron populations 1.70108 1.07727 1.27478 1.52048 1.25875 0.95672 1.03057 0.94947 0.85485 0.79360 0.79161 0.77647 1.18345 1.20279 1.20749 1.21443 0.93436 0.91364 1.49711 0.91870 1.19176 0.93790 0.92455 0.94523 1.19777 0.93732 0.82894 0.94312 0.91928 1.46035 1.58024 1.23136 1.08358 1.18981 0.80304 0.85381 0.83107 1.90786 1.55248 1.61674 1.38666 1.23162 0.98257 0.94510 1.00698 1.22246 0.93739 0.91913 0.98805 1.20456 0.92781 0.93150 0.90263 1.23371 1.00573 0.99034 0.99365 1.23867 0.89009 0.90048 0.98541 1.68458 1.22874 1.33923 1.00048 1.25462 0.89438 0.88433 0.96523 1.68474 1.12365 1.09962 1.33905 1.19756 0.94684 0.98742 0.94277 1.21060 0.99851 1.01173 0.92773 1.21396 0.95720 0.99499 0.97085 1.21459 0.95265 0.98607 0.99273 1.21370 1.00916 0.99739 0.92082 1.21085 0.94729 0.99381 0.98797 0.92952 0.97956 1.00180 0.75172 0.82387 0.83299 0.80427 0.77628 0.76206 0.85714 0.83367 0.83196 0.84026 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.52 -30.02 8.53 25.60 0.22 -29.80 16 8 H 0.06 3.50 6.79 -2.91 -0.02 3.48 16 9 C 0.04 2.10 4.68 29.85 0.14 2.24 16 10 C 0.20 8.56 2.19 44.24 0.10 8.66 16 11 H 0.06 2.99 7.49 -2.39 -0.02 2.97 16 12 N -0.70 -25.32 5.04 -449.92 -2.27 -27.59 16 13 C 0.53 19.76 7.62 86.50 0.66 20.42 16 14 O -0.58 -26.68 15.93 -4.16 -0.07 -26.74 16 15 C -0.14 -3.97 9.58 23.68 0.23 -3.74 16 16 C -0.05 -1.16 9.49 23.87 0.23 -0.93 16 17 C 0.18 3.76 6.74 41.79 0.28 4.04 16 18 C -0.20 -3.05 9.94 22.75 0.23 -2.82 16 19 C 0.15 2.02 11.30 84.68 0.96 2.98 16 20 N -0.54 -9.47 10.42 -200.22 -2.09 -11.56 16 21 C 0.29 5.16 12.27 180.92 2.22 7.38 16 22 N -0.53 -11.57 9.50 -189.51 -1.80 -13.37 16 23 C -0.07 -2.80 4.50 -19.87 -0.09 -2.89 16 24 C -0.13 -4.18 9.02 22.27 0.20 -3.98 16 25 C -0.12 -3.15 10.05 22.27 0.22 -2.93 16 26 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 27 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 28 C -0.12 -4.33 8.83 22.27 0.20 -4.13 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H -0.02 -1.25 8.08 -2.38 -0.02 -1.27 16 32 H 0.41 11.74 6.85 -92.71 -0.63 11.11 16 33 H 0.16 3.72 7.45 -2.91 -0.02 3.70 16 34 H 0.15 3.69 7.52 -2.91 -0.02 3.67 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.22 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.12 3.62 6.95 -2.91 -0.02 3.60 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.11 4.04 7.84 -2.91 -0.02 4.02 16 Total: -1.00 -79.52 369.09 3.20 -76.33 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.41 Total: 24.44 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 6.69 Total: -11.24 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -5.87 Total: -110.21 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.52 3.20 -76.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185111804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.885 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds