Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48489 * 109.47350 * 269.99882 * 3 2 1 5 5 H 1.48507 * 109.46917 * 30.00025 * 3 2 1 6 6 H 1.48506 * 109.47120 * 149.99632 * 3 2 1 7 7 C 1.37877 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00293 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47271 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47552 * 54.99952 * 10 9 7 12 12 N 1.46503 * 109.47488 * 294.99620 * 10 9 7 13 13 C 1.34775 * 120.00420 * 154.99882 * 12 10 9 14 14 O 1.21636 * 119.99625 * 0.02562 * 13 12 10 15 15 C 1.46872 * 120.00047 * 180.02562 * 13 12 10 16 16 C 1.34502 * 120.00007 * 180.02562 * 15 13 12 17 17 C 1.47536 * 120.00256 * 179.97438 * 16 15 13 18 18 C 1.39975 * 120.58547 * 179.97438 * 17 16 15 19 19 C 1.38491 * 118.24095 * 180.02562 * 18 17 16 20 20 N 1.32332 * 119.19436 * 0.02562 * 19 18 17 21 21 C 1.31882 * 121.11525 * 359.97438 * 20 19 18 22 22 N 1.31568 * 121.93804 * 0.02562 * 21 20 19 23 23 C 1.50702 * 109.47295 * 174.99829 * 10 9 7 24 24 C 1.38233 * 119.99929 * 79.72196 * 23 10 9 25 25 C 1.38241 * 119.99919 * 179.78774 * 24 23 10 26 26 C 1.38239 * 119.99661 * 0.44572 * 25 24 23 27 27 C 1.38236 * 120.00167 * 359.81386 * 26 25 24 28 28 C 1.38232 * 119.99812 * 359.97380 * 27 26 25 29 29 H 0.96999 * 120.00015 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47069 * 59.99482 * 9 7 2 31 31 H 1.09001 * 109.47044 * 299.99926 * 9 7 2 32 32 H 0.96999 * 119.99163 * 335.00705 * 12 10 9 33 33 H 1.08002 * 120.00181 * 359.97438 * 15 13 12 34 34 H 1.08002 * 119.99811 * 359.97438 * 16 15 13 35 35 H 1.08002 * 120.87503 * 0.02562 * 18 17 16 36 36 H 1.08003 * 120.39786 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.02735 * 180.02562 * 21 20 19 38 38 H 1.07993 * 120.00316 * 0.02562 * 24 23 10 39 39 H 1.07995 * 119.99981 * 180.27308 * 25 24 23 40 40 H 1.07996 * 119.99561 * 179.82945 * 26 25 24 41 41 H 1.07994 * 119.99722 * 180.02562 * 27 26 25 42 42 H 1.08004 * 119.99522 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 1 3.5872 -3.1762 -0.8393 12 7 3.6335 -3.2907 1.2544 13 6 3.5067 -4.6316 1.3031 14 8 3.7148 -5.2987 0.3075 15 6 3.1172 -5.2873 2.5583 16 6 2.9911 -6.6256 2.6070 17 6 2.6004 -7.2843 3.8680 18 6 2.4651 -8.6761 3.9323 19 6 2.0957 -9.2434 5.1404 20 7 1.8842 -8.4582 6.1844 21 6 2.0200 -7.1497 6.0916 22 7 2.3690 -6.5642 4.9662 23 6 5.5234 -2.6385 -0.1210 24 6 6.3084 -2.3908 0.9896 25 6 7.6862 -2.3970 0.8774 26 6 8.2789 -2.6416 -0.3473 27 6 7.4938 -2.8839 -1.4590 28 6 6.1161 -2.8821 -1.3459 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6805 -0.8889 32 1 3.4679 -2.7587 2.0484 33 1 2.9329 -4.6951 3.4424 34 1 3.1759 -7.2179 1.7230 35 1 2.6441 -9.2911 3.0627 36 1 1.9815 -10.3137 5.2293 37 1 1.8395 -6.5409 6.9652 38 1 5.8454 -2.1964 1.9456 39 1 8.2995 -2.2079 1.7459 40 1 9.3552 -2.6437 -0.4355 41 1 7.9568 -3.0755 -2.4157 42 1 5.5028 -3.0719 -2.2144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185111822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = 51.599477 kcal Electronic energy + Delta-G solvation = -25409.317936 eV Core-core repulsion = 21740.636783 eV Total energy + Delta-G solvation = -3668.681153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.11376 -39.75868 -38.54363 -35.55438 -34.90069 -32.93508 -32.70014 -31.67827 -30.86202 -30.54759 -29.32839 -25.98291 -24.82961 -24.47207 -22.45576 -21.98951 -21.79586 -19.92209 -19.57556 -18.03339 -17.21443 -17.01221 -16.59487 -16.33238 -15.71966 -15.54085 -15.06235 -14.97395 -14.38870 -14.31288 -14.20026 -13.89431 -13.78600 -13.21870 -13.11202 -12.96375 -12.65567 -12.42423 -12.15478 -11.82346 -11.53392 -11.37712 -11.12469 -11.11310 -10.76148 -10.67056 -10.32043 -10.20703 -9.87762 -9.63394 -9.52254 -9.35333 -9.10698 -8.66577 -8.62949 -8.53232 -8.33585 -6.13001 -4.13237 0.17782 0.73031 1.64535 1.68135 1.83485 3.24361 3.32944 3.34773 3.47095 3.52072 3.75571 3.80005 3.92449 4.09886 4.29683 4.36299 4.72852 4.79153 5.11070 5.15185 5.16070 5.18361 5.21784 5.25006 5.27335 5.41512 5.52104 5.78612 5.80484 5.96730 6.08592 6.12371 6.19809 6.25775 6.29308 6.39354 6.69727 6.73549 6.74430 6.76268 6.90135 7.01710 7.26995 7.29531 7.62359 7.82673 8.00058 8.41299 8.62244 8.92428 9.47570 10.99714 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.003503 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.467234 B = 7992.339060 C =10108.792400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.194 3.806 11 H 0.094 0.906 12 N -0.689 5.689 13 C 0.538 3.462 14 O -0.547 6.547 15 C -0.120 4.120 16 C -0.074 4.074 17 C 0.205 3.795 18 C -0.213 4.213 19 C 0.148 3.852 20 N -0.528 5.528 21 C 0.299 3.701 22 N -0.513 5.513 23 C -0.077 4.077 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.264 0.736 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.404 0.596 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.198 0.802 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.813 -13.016 7.723 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.089 3.911 11 H 0.112 0.888 12 N -0.337 5.337 13 C 0.325 3.675 14 O -0.426 6.426 15 C -0.144 4.144 16 C -0.094 4.094 17 C 0.061 3.939 18 C -0.235 4.235 19 C -0.017 4.017 20 N -0.242 5.242 21 C 0.011 3.989 22 N -0.228 5.228 23 C -0.078 4.078 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.239 0.761 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.214 0.786 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.613 -12.779 7.824 18.362 hybrid contribution 0.345 0.758 -0.311 0.889 sum 10.958 -12.021 7.513 17.917 Atomic orbital electron populations 1.69902 1.06277 1.26991 1.50332 1.24981 0.94680 0.98990 0.94395 0.86857 0.80357 0.83856 0.78699 1.20206 1.21326 1.18941 1.21009 0.88637 0.94721 1.51674 0.90594 1.19876 0.97848 0.89706 0.97712 1.19997 0.87683 0.96502 0.86893 0.88825 1.45823 1.67557 1.06018 1.14310 1.18364 0.77976 0.82847 0.88351 1.90765 1.51137 1.64324 1.36421 1.23432 0.96871 0.95950 0.98162 1.22043 0.98123 0.95217 0.94054 1.20486 0.90473 0.90465 0.92457 1.23036 1.03233 0.96141 1.01077 1.23198 0.90093 1.00706 0.87721 1.68379 1.16210 1.06947 1.32710 1.24961 0.90242 0.88604 0.95110 1.68532 1.13251 1.41220 0.99767 1.20552 0.96797 0.96977 0.93501 1.20943 0.93397 0.99876 0.98512 1.21060 0.94823 1.00997 0.97414 1.21027 0.99275 1.01618 0.93199 1.21064 0.93831 1.00785 0.98379 1.21045 0.94656 0.99413 0.97432 0.92601 0.95772 0.95165 0.76070 0.84028 0.83348 0.83052 0.81351 0.78557 0.86431 0.86635 0.86741 0.86471 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.70 27.47 -169.99 -4.67 16.04 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -13.86 9.39 -34.44 -0.32 -14.18 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.30 3.56 -27.89 -0.10 -0.40 16 10 C 0.19 3.74 2.11 -69.08 -0.15 3.60 16 11 H 0.09 2.01 7.44 -51.93 -0.39 1.62 16 12 N -0.69 -12.07 4.04 -56.19 -0.23 -12.30 16 13 C 0.54 9.34 7.72 -12.77 -0.10 9.25 16 14 O -0.55 -11.06 15.90 5.25 0.08 -10.98 16 15 C -0.12 -1.70 9.57 -37.41 -0.36 -2.06 16 16 C -0.07 -0.93 9.49 -37.11 -0.35 -1.29 16 17 C 0.20 2.39 6.74 -82.76 -0.56 1.83 16 18 C -0.21 -1.91 9.94 -38.84 -0.39 -2.29 16 19 C 0.15 1.25 11.30 -17.24 -0.19 1.06 16 20 N -0.53 -5.50 10.42 -14.64 -0.15 -5.66 16 21 C 0.30 3.13 12.28 -92.27 -1.13 2.00 16 22 N -0.51 -6.26 9.50 -11.25 -0.11 -6.37 16 23 C -0.08 -1.34 4.91 -104.62 -0.51 -1.85 16 24 C -0.11 -1.70 9.32 -39.58 -0.37 -2.07 16 25 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 26 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 27 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 28 C -0.11 -1.73 9.67 -39.58 -0.38 -2.12 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 31 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 32 H 0.40 6.44 8.58 -40.82 -0.35 6.09 16 33 H 0.14 1.84 7.45 -52.49 -0.39 1.45 16 34 H 0.15 1.79 7.52 -52.49 -0.39 1.39 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.12 1.70 7.73 -52.49 -0.41 1.29 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.89 8.04 -52.48 -0.42 1.47 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.42 369.81 -10.17 -43.59 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.24 Total: 8.97 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -6.21 Total: -13.02 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.29 Total: -50.17 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.42 -10.17 -43.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185111822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.194 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds