Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48489 * 109.47350 * 269.99882 * 3 2 1 5 5 H 1.48507 * 109.46917 * 30.00025 * 3 2 1 6 6 H 1.48506 * 109.47120 * 149.99632 * 3 2 1 7 7 C 1.37877 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99797 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00293 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47271 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47552 * 54.99952 * 10 9 7 12 12 N 1.46503 * 109.47488 * 294.99620 * 10 9 7 13 13 C 1.34775 * 120.00420 * 154.99882 * 12 10 9 14 14 O 1.21636 * 119.99625 * 0.02562 * 13 12 10 15 15 C 1.46872 * 120.00047 * 180.02562 * 13 12 10 16 16 C 1.34502 * 120.00007 * 180.02562 * 15 13 12 17 17 C 1.47536 * 120.00256 * 179.97438 * 16 15 13 18 18 C 1.39975 * 120.58547 * 179.97438 * 17 16 15 19 19 C 1.38491 * 118.24095 * 180.02562 * 18 17 16 20 20 N 1.32332 * 119.19436 * 0.02562 * 19 18 17 21 21 C 1.31882 * 121.11525 * 359.97438 * 20 19 18 22 22 N 1.31568 * 121.93804 * 0.02562 * 21 20 19 23 23 C 1.50702 * 109.47295 * 174.99829 * 10 9 7 24 24 C 1.38233 * 119.99929 * 79.72196 * 23 10 9 25 25 C 1.38241 * 119.99919 * 179.78774 * 24 23 10 26 26 C 1.38239 * 119.99661 * 0.44572 * 25 24 23 27 27 C 1.38236 * 120.00167 * 359.81386 * 26 25 24 28 28 C 1.38232 * 119.99812 * 359.97380 * 27 26 25 29 29 H 0.96999 * 120.00015 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47069 * 59.99482 * 9 7 2 31 31 H 1.09001 * 109.47044 * 299.99926 * 9 7 2 32 32 H 0.96999 * 119.99163 * 335.00705 * 12 10 9 33 33 H 1.08002 * 120.00181 * 359.97438 * 15 13 12 34 34 H 1.08002 * 119.99811 * 359.97438 * 16 15 13 35 35 H 1.08002 * 120.87503 * 0.02562 * 18 17 16 36 36 H 1.08003 * 120.39786 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.02735 * 180.02562 * 21 20 19 38 38 H 1.07993 * 120.00316 * 0.02562 * 24 23 10 39 39 H 1.07995 * 119.99981 * 180.27308 * 25 24 23 40 40 H 1.07996 * 119.99561 * 179.82945 * 26 25 24 41 41 H 1.07994 * 119.99722 * 180.02562 * 27 26 25 42 42 H 1.08004 * 119.99522 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 1 3.5872 -3.1762 -0.8393 12 7 3.6335 -3.2907 1.2544 13 6 3.5067 -4.6316 1.3031 14 8 3.7148 -5.2987 0.3075 15 6 3.1172 -5.2873 2.5583 16 6 2.9911 -6.6256 2.6070 17 6 2.6004 -7.2843 3.8680 18 6 2.4651 -8.6761 3.9323 19 6 2.0957 -9.2434 5.1404 20 7 1.8842 -8.4582 6.1844 21 6 2.0200 -7.1497 6.0916 22 7 2.3690 -6.5642 4.9662 23 6 5.5234 -2.6385 -0.1210 24 6 6.3084 -2.3908 0.9896 25 6 7.6862 -2.3970 0.8774 26 6 8.2789 -2.6416 -0.3473 27 6 7.4938 -2.8839 -1.4590 28 6 6.1161 -2.8821 -1.3459 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6800 0.8911 31 1 3.8752 -0.6805 -0.8889 32 1 3.4679 -2.7587 2.0484 33 1 2.9329 -4.6951 3.4424 34 1 3.1759 -7.2179 1.7230 35 1 2.6441 -9.2911 3.0627 36 1 1.9815 -10.3137 5.2293 37 1 1.8395 -6.5409 6.9652 38 1 5.8454 -2.1964 1.9456 39 1 8.2995 -2.2079 1.7459 40 1 9.3552 -2.6437 -0.4355 41 1 7.9568 -3.0755 -2.4157 42 1 5.5028 -3.0719 -2.2144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185111822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = 31.923360 kcal Electronic energy + Delta-G solvation = -25410.171156 eV Core-core repulsion = 21740.636783 eV Total energy + Delta-G solvation = -3669.534373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90433 -41.10917 -39.76997 -36.96554 -35.92913 -34.70352 -33.77610 -32.93302 -31.92630 -31.67059 -30.97729 -27.31261 -26.05834 -25.30530 -23.62403 -23.42054 -23.04508 -21.32255 -20.81760 -19.08130 -18.97604 -18.07014 -17.80653 -17.47071 -16.89333 -16.41106 -16.36893 -16.17920 -15.83969 -15.52102 -15.49043 -15.10031 -14.68311 -14.61767 -14.34830 -14.25019 -14.16643 -13.81593 -13.53641 -13.24270 -13.05947 -12.55582 -12.43834 -12.39318 -11.93988 -11.86922 -11.75134 -11.73999 -11.43037 -11.14296 -11.06711 -10.77419 -10.33260 -10.18403 -9.90203 -9.76068 -9.55097 -8.28249 -6.33254 -0.75782 0.01315 0.48736 0.55349 0.82194 1.37479 1.38597 1.49563 2.20434 2.30468 2.35596 2.87613 2.91030 2.97408 3.07719 3.26136 3.45944 3.84849 3.92428 4.02211 4.09463 4.11580 4.18933 4.20457 4.32418 4.38024 4.57390 4.60200 4.70867 4.72410 4.76037 5.00183 5.07620 5.13712 5.18073 5.18485 5.25832 5.39795 5.51981 5.55830 5.64277 5.64983 5.85554 5.97927 6.17261 6.25241 6.61319 6.74292 7.05359 7.24251 7.31085 8.88091 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.003503 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.467234 B = 7992.339060 C =10108.792400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.521 4.521 8 H 0.032 0.968 9 C -0.005 4.005 10 C 0.204 3.796 11 H 0.059 0.941 12 N -0.689 5.689 13 C 0.537 3.463 14 O -0.584 6.584 15 C -0.145 4.145 16 C -0.047 4.047 17 C 0.175 3.825 18 C -0.201 4.201 19 C 0.150 3.850 20 N -0.539 5.539 21 C 0.289 3.711 22 N -0.535 5.535 23 C -0.100 4.100 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.130 4.130 29 H 0.266 0.734 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.411 0.589 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.181 0.819 36 H 0.208 0.792 37 H 0.219 0.781 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.676 -13.633 8.985 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.559 4.559 8 H 0.050 0.950 9 C -0.042 4.042 10 C 0.099 3.901 11 H 0.077 0.923 12 N -0.337 5.337 13 C 0.326 3.674 14 O -0.466 6.466 15 C -0.169 4.169 16 C -0.067 4.067 17 C 0.032 3.968 18 C -0.222 4.222 19 C -0.015 4.015 20 N -0.253 5.253 21 C 0.001 3.999 22 N -0.250 5.250 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.247 0.753 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.198 0.802 36 H 0.225 0.775 37 H 0.235 0.765 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.495 -13.392 9.101 21.078 hybrid contribution -0.576 0.722 -0.674 1.143 sum 12.919 -12.670 8.427 19.961 Atomic orbital electron populations 1.70061 1.08309 1.28082 1.52332 1.25894 0.95443 1.03116 0.94095 0.85746 0.79737 0.78643 0.79045 1.19733 1.21139 1.16490 1.21205 0.91059 0.93008 1.50617 0.95000 1.19732 0.94567 0.91885 0.98034 1.19601 0.89625 0.94336 0.86570 0.92262 1.45781 1.67621 1.06391 1.13914 1.18830 0.76984 0.82529 0.89042 1.90728 1.53014 1.64898 1.37963 1.23182 1.00214 0.96611 0.96858 1.22227 0.94991 0.94670 0.94814 1.20515 0.92481 0.91807 0.91969 1.23371 1.01384 0.95029 1.02421 1.23888 0.88490 1.02317 0.86844 1.68456 1.16194 1.07032 1.33606 1.25423 0.90079 0.89147 0.95291 1.68487 1.13927 1.42176 1.00439 1.20358 0.95149 0.99672 0.94931 1.21102 0.94503 1.00192 0.98081 1.21439 0.94109 0.99735 0.98912 1.21486 1.01062 0.99532 0.92406 1.21390 0.92744 0.99790 1.00153 1.21188 0.96131 1.00566 0.96949 0.92532 0.94458 0.95128 0.75340 0.83225 0.82930 0.80179 0.77499 0.76468 0.85869 0.83636 0.83198 0.83840 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 13.96 21.45 0.30 -58.12 16 2 C 0.01 0.67 5.47 84.66 0.46 1.14 16 3 Si 0.94 42.90 27.47 68.60 1.88 44.79 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 7 C -0.52 -28.90 9.39 25.60 0.24 -28.65 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 9 C 0.00 -0.20 3.56 29.85 0.11 -0.10 16 10 C 0.20 8.29 2.11 44.24 0.09 8.38 16 11 H 0.06 2.77 7.44 -2.39 -0.02 2.75 16 12 N -0.69 -25.50 4.04 -449.93 -1.82 -27.31 16 13 C 0.54 19.76 7.72 86.50 0.67 20.42 16 14 O -0.58 -25.00 15.90 -4.14 -0.07 -25.07 16 15 C -0.15 -4.27 9.57 23.68 0.23 -4.04 16 16 C -0.05 -1.18 9.49 23.87 0.23 -0.96 16 17 C 0.18 3.93 6.74 41.79 0.28 4.21 16 18 C -0.20 -3.12 9.94 22.75 0.23 -2.90 16 19 C 0.15 2.11 11.30 84.68 0.96 3.07 16 20 N -0.54 -10.15 10.42 -200.23 -2.09 -12.24 16 21 C 0.29 5.72 12.28 180.93 2.22 7.94 16 22 N -0.54 -12.80 9.50 -189.50 -1.80 -14.60 16 23 C -0.10 -3.51 4.91 -19.87 -0.10 -3.60 16 24 C -0.12 -3.63 9.32 22.27 0.21 -3.42 16 25 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 27 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 28 C -0.13 -4.22 9.67 22.27 0.22 -4.01 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 31 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 32 H 0.41 13.75 8.58 -92.71 -0.80 12.95 16 33 H 0.15 4.07 7.45 -2.91 -0.02 4.05 16 34 H 0.15 3.69 7.52 -2.91 -0.02 3.66 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.12 3.44 7.73 -2.91 -0.02 3.42 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.11 3.74 8.04 -2.91 -0.02 3.72 16 Total: -1.00 -76.10 369.81 3.31 -72.79 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.19 Total: 30.71 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 6.71 Total: -10.95 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -5.40 Total: -112.27 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.79 kcal Total: -76.10 3.31 -72.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185111822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.710 kcal (2) G-P(sol) polarization free energy of solvation -76.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds