Wall clock time and date at job start Tue Mar 31 2020 14:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38422 * 119.83862 * 2 1 4 4 C 1.37900 * 120.17854 * 179.97438 * 3 2 1 5 5 C 1.39624 * 119.86942 * 0.02562 * 4 3 2 6 6 C 1.47767 * 120.15519 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99836 * 145.95677 * 6 5 4 8 8 N 1.34777 * 120.00374 * 325.95082 * 6 5 4 9 9 C 1.46508 * 119.99600 * 6.73351 * 8 6 5 10 10 C 1.50699 * 109.47009 * 103.70665 * 9 8 6 11 11 H 1.08004 * 119.99858 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00307 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99607 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00146 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47040 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.46785 * 120.00203 * 14 12 10 17 17 H 1.48501 * 109.46788 * 239.99910 * 14 12 10 18 18 C 1.46496 * 120.00222 * 186.73434 * 8 6 5 19 19 C 1.52998 * 109.47226 * 90.00144 * 18 8 6 20 20 C 1.52993 * 109.47373 * 179.97438 * 19 18 8 21 21 C 1.53001 * 109.47006 * 64.99823 * 20 19 18 22 22 C 1.53003 * 109.47492 * 184.99959 * 20 19 18 23 23 C 1.39691 * 119.68709 * 0.02562 * 5 4 3 24 24 Cl 1.73605 * 120.09260 * 179.97438 * 23 5 4 25 25 C 1.38156 * 119.81865 * 0.24743 * 23 5 4 26 26 H 1.08995 * 109.47741 * 89.99830 * 1 2 3 27 27 H 1.09003 * 109.46429 * 209.99495 * 1 2 3 28 28 H 1.09002 * 109.47018 * 329.98714 * 1 2 3 29 29 H 1.07997 * 119.91229 * 359.96438 * 3 2 1 30 30 H 1.08008 * 120.06280 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46899 * 223.70104 * 9 8 6 32 32 H 1.08999 * 109.46825 * 343.70995 * 9 8 6 33 33 H 0.97001 * 119.99641 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.47165 * 210.00099 * 18 8 6 35 35 H 1.08997 * 109.47103 * 330.00240 * 18 8 6 36 36 H 1.08998 * 109.47326 * 299.99796 * 19 18 8 37 37 H 1.09010 * 109.47182 * 59.99864 * 19 18 8 38 38 H 1.08999 * 109.47733 * 305.00198 * 20 19 18 39 39 H 1.09010 * 109.46660 * 60.00156 * 21 20 19 40 40 H 1.09003 * 109.47312 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47523 * 300.00494 * 21 20 19 42 42 H 1.09002 * 109.46864 * 60.00047 * 22 20 19 43 43 H 1.09004 * 109.47089 * 180.02562 * 22 20 19 44 44 H 1.09004 * 109.46779 * 300.00316 * 22 20 19 45 45 H 1.07997 * 119.93601 * 179.72843 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2007 0.0000 4 6 3.5747 1.2089 0.0005 5 6 4.2772 0.0023 0.0005 6 6 5.7549 0.0037 0.0005 7 8 6.3635 -0.8681 0.5899 8 7 6.4279 0.9714 -0.6530 9 6 5.7019 2.1016 -1.2376 10 6 5.8829 3.3189 -0.3679 11 1 6.4788 3.2567 0.5307 12 6 5.2870 4.5117 -0.7187 13 7 4.5602 4.5870 -1.8122 14 14 5.5108 6.0204 0.3598 15 1 6.3652 5.6743 1.5240 16 1 6.1593 7.0997 -0.4274 17 1 4.1852 6.4863 0.8403 18 6 7.8854 0.8930 -0.7787 19 6 8.2470 0.1337 -2.0567 20 6 9.7691 0.0524 -2.1884 21 6 10.3358 -0.7894 -1.0433 22 6 10.1315 -0.5961 -3.5259 23 6 3.5766 -1.2062 -0.0006 24 17 4.4395 -2.7126 -0.0012 25 6 2.1951 -1.1994 -0.0068 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6517 2.1336 -0.0006 30 1 4.1102 2.1469 0.0001 31 1 6.0910 2.3066 -2.2349 32 1 4.6418 1.8571 -1.3043 33 1 4.1406 5.4260 -2.0589 34 1 8.3008 1.8998 -0.8244 35 1 8.2968 0.3690 0.0840 36 1 7.8317 -0.8731 -2.0111 37 1 7.8355 0.6577 -2.9195 38 1 10.1918 1.0562 -2.1449 39 1 9.9132 -1.7933 -1.0867 40 1 11.4202 -0.8477 -1.1373 41 1 10.0776 -0.3275 -0.0904 42 1 9.7278 0.0037 -4.3417 43 1 11.2160 -0.6544 -3.6194 44 1 9.7089 -1.5999 -3.5693 45 1 1.6515 -2.1325 -0.0121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191235733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:55 Heat of formation + Delta-G solvation = -22.682036 kcal Electronic energy + Delta-G solvation = -25771.670202 eV Core-core repulsion = 22200.875455 eV Total energy + Delta-G solvation = -3570.794747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.93047 -38.16963 -36.45933 -36.06187 -34.92752 -32.71682 -32.50524 -30.49561 -29.17818 -27.48127 -26.99200 -26.74491 -23.47238 -23.13418 -22.23894 -21.27757 -19.74212 -18.95877 -16.82114 -16.49380 -15.94946 -15.58243 -14.94661 -14.90392 -14.69391 -14.41061 -13.88977 -13.74397 -13.60534 -13.33063 -13.23339 -12.91015 -12.51790 -12.40661 -12.26975 -12.13053 -11.99250 -11.78423 -11.56559 -11.34125 -11.05798 -11.04044 -10.94093 -10.87488 -10.69436 -10.50842 -10.46507 -10.30188 -10.10727 -9.94037 -9.73368 -8.99310 -8.77140 -8.28838 -8.24246 -7.67703 -6.30913 -4.40198 1.24078 1.61529 2.52271 3.14476 3.24178 3.28339 3.41295 3.84173 4.14063 4.27356 4.94675 4.98652 5.07571 5.15029 5.18358 5.19564 5.28164 5.41604 5.53609 5.65117 5.71114 5.76411 5.78540 5.88103 5.94602 5.98217 6.02928 6.04866 6.07169 6.16218 6.28370 6.34950 6.41179 6.44436 6.52480 6.67101 6.69963 6.75635 6.77252 6.86147 7.16208 7.22515 7.50912 7.64478 7.91388 8.32788 8.69396 8.99028 9.28622 10.73808 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007446 B = 0.006497 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3759.310748 B = 4308.921137 C = 7402.205428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.131 4.131 4 C -0.069 4.069 5 C -0.130 4.130 6 C 0.554 3.446 7 O -0.550 6.550 8 N -0.587 5.587 9 C 0.207 3.793 10 C -0.542 4.542 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.883 5.883 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.121 3.879 19 C -0.127 4.127 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.144 4.144 23 C 0.013 3.987 24 Cl -0.058 7.058 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.195 0.805 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -7.986 -0.422 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.087 4.087 5 C -0.134 4.134 6 C 0.342 3.658 7 O -0.430 6.430 8 N -0.317 5.317 9 C 0.088 3.912 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.136 4.136 13 N -0.520 5.520 14 Si 0.722 3.278 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.002 4.002 19 C -0.166 4.166 20 C -0.112 4.112 21 C -0.204 4.204 22 C -0.202 4.202 23 C -0.015 4.015 24 Cl -0.029 7.029 25 C -0.158 4.158 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.212 0.788 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.413 -8.429 -0.246 8.550 hybrid contribution 0.074 0.902 0.320 0.960 sum -1.340 -7.528 0.074 7.646 Atomic orbital electron populations 1.20804 0.90897 1.02773 1.02468 1.20001 0.96089 0.92641 0.97543 1.21168 0.94408 0.97522 1.01791 1.22943 0.94678 1.00140 0.90938 1.19879 0.94457 0.92524 1.06561 1.18068 0.86546 0.81794 0.79411 1.90714 1.69494 1.38202 1.44582 1.48035 1.06980 1.23169 1.53494 1.20257 0.94113 0.82525 0.94305 1.21513 1.32672 0.94217 1.09655 0.91638 1.24980 0.94662 0.98841 0.95149 1.69946 1.31738 1.27036 1.23249 0.86472 0.78284 0.82443 0.80600 1.19490 1.20710 1.20629 1.21353 0.80715 1.00752 0.97389 1.21986 0.94725 1.00969 0.98914 1.21040 0.95668 0.99539 0.94978 1.21876 0.99746 1.00157 0.98641 1.21823 1.00629 1.00683 0.97052 1.20905 0.92003 0.86730 1.01867 1.98362 1.77287 1.30716 1.96558 1.20683 0.91420 0.98414 1.05289 0.90928 0.91607 0.91220 0.85206 0.78812 0.95072 0.91610 0.92307 0.90261 0.90661 0.92113 0.91849 0.91161 0.92815 0.93348 0.92214 0.92785 0.93093 0.92949 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.00 36.01 0.36 -0.84 16 2 C -0.06 -0.91 5.88 -104.54 -0.62 -1.52 16 3 C -0.13 -2.19 9.68 -39.64 -0.38 -2.58 16 4 C -0.07 -1.38 7.42 -39.19 -0.29 -1.67 16 5 C -0.13 -2.65 5.51 -104.94 -0.58 -3.23 16 6 C 0.55 12.10 7.17 -12.37 -0.09 12.02 16 7 O -0.55 -12.68 14.53 5.31 0.08 -12.61 16 8 N -0.59 -12.54 2.49 -176.20 -0.44 -12.98 16 9 C 0.21 4.78 4.68 -5.19 -0.02 4.76 16 10 C -0.54 -13.34 7.52 -34.44 -0.26 -13.60 16 11 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 12 C 0.07 1.69 5.45 -17.82 -0.10 1.59 16 13 N -0.88 -22.67 13.29 55.43 0.74 -21.93 16 14 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.12 2.28 5.17 -4.04 -0.02 2.26 16 19 C -0.13 -2.10 5.01 -26.74 -0.13 -2.23 16 20 C -0.09 -1.27 2.92 -90.62 -0.26 -1.53 16 21 C -0.15 -1.92 8.95 37.16 0.33 -1.59 16 22 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 23 C 0.01 0.23 6.34 -39.07 -0.25 -0.02 16 24 Cl -0.06 -1.03 26.63 -51.86 -1.38 -2.41 16 25 C -0.14 -2.14 9.47 -39.60 -0.37 -2.51 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.20 4.32 3.86 -52.48 -0.20 4.11 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.55 3.82 -52.11 -0.20 1.35 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 35 H 0.08 1.44 5.76 -51.93 -0.30 1.14 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.83 6.57 -51.93 -0.34 0.48 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -26.96 375.93 -9.62 -36.58 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.91 Total: 5.28 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.34 Total: -12.08 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.30 Total: -34.91 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.38 Total: -2.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -26.96 -9.62 -36.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191235733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.894 kcal (2) G-P(sol) polarization free energy of solvation -26.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds