Wall clock time and date at job start Tue Mar 31 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38421 * 119.84432 * 2 1 4 4 C 1.37895 * 120.18905 * 179.97438 * 3 2 1 5 5 C 1.39636 * 119.85969 * 0.02562 * 4 3 2 6 6 C 1.47768 * 120.15193 * 179.97438 * 5 4 3 7 7 O 1.21565 * 119.99583 * 147.04253 * 6 5 4 8 8 N 1.34776 * 120.00302 * 327.04616 * 6 5 4 9 9 C 1.46497 * 119.99874 * 7.17078 * 8 6 5 10 10 C 1.50702 * 109.46999 * 101.38700 * 9 8 6 11 11 H 1.07994 * 120.00161 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99779 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47319 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46969 * 120.00306 * 14 12 10 17 17 H 1.48502 * 109.47048 * 239.99929 * 14 12 10 18 18 C 1.46503 * 119.99811 * 187.16959 * 8 6 5 19 19 C 1.53001 * 109.47040 * 89.19873 * 18 8 6 20 20 C 1.53001 * 109.47414 * 63.35493 * 19 18 8 21 21 C 1.52994 * 109.47531 * 183.36061 * 19 18 8 22 22 C 1.53011 * 109.46914 * 303.35943 * 19 18 8 23 23 C 1.39686 * 119.69171 * 0.02562 * 5 4 3 24 24 Cl 1.73599 * 120.09346 * 179.97438 * 23 5 4 25 25 C 1.38163 * 119.81462 * 0.24976 * 23 5 4 26 26 H 1.08994 * 109.47177 * 89.99514 * 1 2 3 27 27 H 1.09001 * 109.47112 * 209.99924 * 1 2 3 28 28 H 1.09000 * 109.46808 * 329.99732 * 1 2 3 29 29 H 1.08003 * 119.90719 * 359.95909 * 3 2 1 30 30 H 1.07996 * 120.07108 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47263 * 221.38358 * 9 8 6 32 32 H 1.08996 * 109.47056 * 341.38338 * 9 8 6 33 33 H 0.96998 * 119.99311 * 179.97438 * 13 12 10 34 34 H 1.09006 * 109.46974 * 209.19317 * 18 8 6 35 35 H 1.08995 * 109.47347 * 329.19820 * 18 8 6 36 36 H 1.09002 * 109.47046 * 60.00101 * 20 19 18 37 37 H 1.08999 * 109.47250 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47031 * 300.00416 * 20 19 18 39 39 H 1.08997 * 109.47318 * 59.99088 * 21 19 18 40 40 H 1.08999 * 109.47605 * 179.97438 * 21 19 18 41 41 H 1.09006 * 109.47055 * 299.99645 * 21 19 18 42 42 H 1.08997 * 109.47292 * 65.40668 * 22 19 18 43 43 H 1.09001 * 109.46730 * 185.40589 * 22 19 18 44 44 H 1.09002 * 109.46760 * 305.40293 * 22 19 18 45 45 H 1.08003 * 119.93457 * 179.72471 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2773 0.0021 0.0005 6 6 5.7549 0.0035 0.0005 7 8 6.3635 -0.8793 0.5733 8 7 6.4280 0.9835 -0.6344 9 6 5.7031 2.1294 -1.1889 10 6 5.8464 3.3101 -0.2634 11 1 6.4203 3.2164 0.6466 12 6 5.2455 4.5103 -0.5790 13 7 4.5469 4.6245 -1.6875 14 14 5.4225 5.9736 0.5685 15 1 6.2510 5.5875 1.7389 16 1 6.0785 7.0929 -0.1542 17 1 4.0792 6.4039 1.0327 18 6 7.8845 0.9027 -0.7699 19 6 8.2362 0.1540 -2.0570 20 6 7.7254 0.9449 -3.2630 21 6 9.7547 -0.0038 -2.1566 22 6 7.5800 -1.2281 -2.0385 23 6 3.5766 -1.2063 -0.0006 24 17 4.4395 -2.7127 -0.0012 25 6 2.1950 -1.1993 -0.0068 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6518 2.1336 -0.0007 30 1 4.1103 2.1468 0.0001 31 1 6.1150 2.3817 -2.1660 32 1 4.6482 1.8758 -1.2938 33 1 4.1240 5.4688 -1.9092 34 1 8.3021 1.9089 -0.8092 35 1 8.3000 0.3701 0.0855 36 1 8.1928 1.9295 -3.2762 37 1 7.9756 0.4112 -4.1799 38 1 6.6435 1.0572 -3.1920 39 1 10.1187 -0.5672 -1.2974 40 1 10.0053 -0.5376 -3.0733 41 1 10.2222 0.9808 -2.1698 42 1 6.4961 -1.1161 -2.0644 43 1 7.9074 -1.7974 -2.9084 44 1 7.8692 -1.7554 -1.1293 45 1 1.6514 -2.1325 -0.0122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191237362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:14 Heat of formation + Delta-G solvation = -12.556609 kcal Electronic energy + Delta-G solvation = -26633.552871 eV Core-core repulsion = 23063.197195 eV Total energy + Delta-G solvation = -3570.355675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.06917 -38.40516 -36.52329 -36.02696 -34.67240 -32.52052 -32.27410 -30.39775 -27.86951 -27.54440 -26.90109 -26.66292 -25.32626 -23.11498 -22.28656 -21.47472 -19.44768 -18.17304 -16.81533 -16.51507 -15.91980 -15.54682 -14.99009 -14.70593 -14.61514 -14.22082 -13.90964 -13.69683 -13.48857 -13.26567 -13.08785 -12.67599 -12.46823 -12.30935 -12.14287 -12.07215 -11.79783 -11.68679 -11.34920 -11.19537 -11.10302 -11.02854 -10.91878 -10.87747 -10.68708 -10.49641 -10.35351 -10.25979 -10.16473 -9.81173 -9.70320 -8.93973 -8.74969 -8.26622 -8.21621 -7.61698 -6.30777 -4.39840 1.25868 1.63664 2.54208 3.14325 3.24212 3.28518 3.44144 3.87901 4.15773 4.28539 4.96663 4.98644 5.16458 5.22750 5.25110 5.30143 5.41220 5.45181 5.56593 5.65808 5.79720 5.92836 5.93140 5.97731 6.00494 6.06500 6.17032 6.23412 6.24505 6.36838 6.37743 6.46219 6.54630 6.55579 6.62211 6.67299 6.76321 6.85444 6.87063 6.91705 7.19931 7.26157 7.53423 7.65401 7.92819 8.35290 8.70537 9.02693 9.28798 10.73339 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.007225 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.861424 B = 3874.469928 C = 6455.609143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.132 4.132 4 C -0.073 4.073 5 C -0.132 4.132 6 C 0.556 3.444 7 O -0.548 6.548 8 N -0.584 5.584 9 C 0.201 3.799 10 C -0.542 4.542 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.882 5.882 14 Si 0.894 3.106 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.133 3.867 19 C -0.084 4.084 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.131 4.131 23 C 0.012 3.988 24 Cl -0.058 7.058 25 C -0.140 4.140 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.200 0.800 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.267 0.733 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -7.725 -0.862 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.150 4.150 4 C -0.091 4.091 5 C -0.135 4.135 6 C 0.344 3.656 7 O -0.428 6.428 8 N -0.313 5.313 9 C 0.082 3.918 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.519 5.519 14 Si 0.721 3.279 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.009 3.991 19 C -0.086 4.086 20 C -0.198 4.198 21 C -0.193 4.193 22 C -0.188 4.188 23 C -0.015 4.015 24 Cl -0.028 7.028 25 C -0.159 4.159 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.216 0.784 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.408 -8.168 -0.690 8.544 hybrid contribution 0.033 0.897 0.399 0.982 sum -2.375 -7.271 -0.291 7.655 Atomic orbital electron populations 1.20802 0.90952 1.02749 1.02435 1.20002 0.96058 0.92675 0.97584 1.21175 0.94487 0.97461 1.01860 1.23139 0.94721 1.00489 0.90706 1.19906 0.94575 0.92468 1.06582 1.17984 0.86431 0.81911 0.79230 1.90710 1.69407 1.37788 1.44897 1.47940 1.06854 1.21869 1.54639 1.20420 0.94070 0.82135 0.95181 1.21538 1.33483 0.95315 1.07726 0.91677 1.24975 0.94710 0.98643 0.95281 1.69943 1.32422 1.26405 1.23120 0.86489 0.78217 0.82241 0.80953 1.19504 1.20730 1.20653 1.21345 0.81042 1.00469 0.96224 1.20959 0.95080 0.96160 0.96361 1.21976 1.02357 0.99306 0.96157 1.21777 0.94914 1.01366 1.01238 1.21820 1.00571 0.95447 1.00968 1.20914 0.91988 0.86780 1.01843 1.98362 1.77257 1.30683 1.96545 1.20679 0.91468 0.98369 1.05413 0.90963 0.91630 0.91244 0.85290 0.78370 0.93931 0.91875 0.92315 0.90267 0.90956 0.92644 0.93811 0.91540 0.92844 0.92992 0.92729 0.93018 0.94086 0.91987 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.00 36.01 0.36 -0.85 16 2 C -0.06 -0.92 5.88 -104.54 -0.62 -1.54 16 3 C -0.13 -2.22 9.68 -39.64 -0.38 -2.61 16 4 C -0.07 -1.45 7.44 -39.19 -0.29 -1.74 16 5 C -0.13 -2.64 5.54 -104.94 -0.58 -3.22 16 6 C 0.56 11.82 5.40 -12.36 -0.07 11.75 16 7 O -0.55 -12.22 12.96 5.31 0.07 -12.15 16 8 N -0.58 -12.09 2.02 -176.20 -0.36 -12.45 16 9 C 0.20 4.52 3.99 -5.19 -0.02 4.50 16 10 C -0.54 -13.18 7.54 -34.44 -0.26 -13.44 16 11 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.68 5.42 -17.82 -0.10 1.58 16 13 N -0.88 -22.38 13.29 55.43 0.74 -21.65 16 14 Si 0.89 19.44 29.54 -169.99 -5.02 14.42 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 18 C 0.13 2.47 4.56 -4.04 -0.02 2.45 16 19 C -0.08 -1.37 0.85 -154.50 -0.13 -1.50 16 20 C -0.14 -2.30 7.48 37.16 0.28 -2.03 16 21 C -0.14 -1.83 8.47 37.15 0.31 -1.51 16 22 C -0.13 -2.20 7.14 37.16 0.27 -1.94 16 23 C 0.01 0.23 6.34 -39.07 -0.25 -0.02 16 24 Cl -0.06 -1.00 26.59 -51.86 -1.38 -2.38 16 25 C -0.14 -2.16 9.47 -39.60 -0.37 -2.53 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 30 H 0.20 4.41 3.58 -52.49 -0.19 4.23 16 31 H 0.04 1.00 5.66 -51.93 -0.29 0.71 16 32 H 0.06 1.47 3.90 -52.04 -0.20 1.27 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 34 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 35 H 0.07 1.38 7.36 -51.93 -0.38 0.99 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.22 5.76 -51.93 -0.30 0.93 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.97 6.65 -51.93 -0.35 0.62 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.11 7.33 -51.93 -0.38 0.73 16 45 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -26.19 364.59 -9.02 -35.22 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.70 Total: 6.14 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.87 Total: -12.64 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.38 Total: -34.09 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.38 Total: -2.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.19 -9.02 -35.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191237362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.661 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds