Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38421 * 119.84432 * 2 1 4 4 C 1.37895 * 120.18905 * 179.97438 * 3 2 1 5 5 C 1.39636 * 119.85969 * 0.02562 * 4 3 2 6 6 C 1.47768 * 120.15193 * 179.97438 * 5 4 3 7 7 O 1.21565 * 119.99583 * 147.04253 * 6 5 4 8 8 N 1.34776 * 120.00302 * 327.04616 * 6 5 4 9 9 C 1.46497 * 119.99874 * 7.17078 * 8 6 5 10 10 C 1.50702 * 109.46999 * 101.38700 * 9 8 6 11 11 H 1.07994 * 120.00161 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99779 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99834 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47319 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46969 * 120.00306 * 14 12 10 17 17 H 1.48502 * 109.47048 * 239.99929 * 14 12 10 18 18 C 1.46503 * 119.99811 * 187.16959 * 8 6 5 19 19 C 1.53001 * 109.47040 * 89.19873 * 18 8 6 20 20 C 1.53001 * 109.47414 * 63.35493 * 19 18 8 21 21 C 1.52994 * 109.47531 * 183.36061 * 19 18 8 22 22 C 1.53011 * 109.46914 * 303.35943 * 19 18 8 23 23 C 1.39686 * 119.69171 * 0.02562 * 5 4 3 24 24 Cl 1.73599 * 120.09346 * 179.97438 * 23 5 4 25 25 C 1.38163 * 119.81462 * 0.24976 * 23 5 4 26 26 H 1.08994 * 109.47177 * 89.99514 * 1 2 3 27 27 H 1.09001 * 109.47112 * 209.99924 * 1 2 3 28 28 H 1.09000 * 109.46808 * 329.99732 * 1 2 3 29 29 H 1.08003 * 119.90719 * 359.95909 * 3 2 1 30 30 H 1.07996 * 120.07108 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47263 * 221.38358 * 9 8 6 32 32 H 1.08996 * 109.47056 * 341.38338 * 9 8 6 33 33 H 0.96998 * 119.99311 * 179.97438 * 13 12 10 34 34 H 1.09006 * 109.46974 * 209.19317 * 18 8 6 35 35 H 1.08995 * 109.47347 * 329.19820 * 18 8 6 36 36 H 1.09002 * 109.47046 * 60.00101 * 20 19 18 37 37 H 1.08999 * 109.47250 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47031 * 300.00416 * 20 19 18 39 39 H 1.08997 * 109.47318 * 59.99088 * 21 19 18 40 40 H 1.08999 * 109.47605 * 179.97438 * 21 19 18 41 41 H 1.09006 * 109.47055 * 299.99645 * 21 19 18 42 42 H 1.08997 * 109.47292 * 65.40668 * 22 19 18 43 43 H 1.09001 * 109.46730 * 185.40589 * 22 19 18 44 44 H 1.09002 * 109.46760 * 305.40293 * 22 19 18 45 45 H 1.08003 * 119.93457 * 179.72471 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2773 0.0021 0.0005 6 6 5.7549 0.0035 0.0005 7 8 6.3635 -0.8793 0.5733 8 7 6.4280 0.9835 -0.6344 9 6 5.7031 2.1294 -1.1889 10 6 5.8464 3.3101 -0.2634 11 1 6.4203 3.2164 0.6466 12 6 5.2455 4.5103 -0.5790 13 7 4.5469 4.6245 -1.6875 14 14 5.4225 5.9736 0.5685 15 1 6.2510 5.5875 1.7389 16 1 6.0785 7.0929 -0.1542 17 1 4.0792 6.4039 1.0327 18 6 7.8845 0.9027 -0.7699 19 6 8.2362 0.1540 -2.0570 20 6 7.7254 0.9449 -3.2630 21 6 9.7547 -0.0038 -2.1566 22 6 7.5800 -1.2281 -2.0385 23 6 3.5766 -1.2063 -0.0006 24 17 4.4395 -2.7127 -0.0012 25 6 2.1950 -1.1993 -0.0068 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6518 2.1336 -0.0007 30 1 4.1103 2.1468 0.0001 31 1 6.1150 2.3817 -2.1660 32 1 4.6482 1.8758 -1.2938 33 1 4.1240 5.4688 -1.9092 34 1 8.3021 1.9089 -0.8092 35 1 8.3000 0.3701 0.0855 36 1 8.1928 1.9295 -3.2762 37 1 7.9756 0.4112 -4.1799 38 1 6.6435 1.0572 -3.1920 39 1 10.1187 -0.5672 -1.2974 40 1 10.0053 -0.5376 -3.0733 41 1 10.2222 0.9808 -2.1698 42 1 6.4961 -1.1161 -2.0644 43 1 7.9074 -1.7974 -2.9084 44 1 7.8692 -1.7554 -1.1293 45 1 1.6514 -2.1325 -0.0122 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191237362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = -23.004579 kcal Electronic energy + Delta-G solvation = -26634.005929 eV Core-core repulsion = 23063.197195 eV Total energy + Delta-G solvation = -3570.808733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59706 -39.78796 -38.01141 -37.40294 -36.31516 -34.31294 -33.56908 -31.76099 -29.56683 -28.84749 -28.12477 -28.08081 -26.74405 -24.87717 -23.66917 -22.83112 -20.92602 -19.61450 -18.64942 -18.11634 -17.44996 -16.90832 -16.60297 -16.36436 -16.05083 -15.63896 -15.26728 -14.93184 -14.90969 -14.58600 -14.43780 -14.35898 -13.98930 -13.55068 -13.50160 -13.18201 -13.05530 -13.02790 -12.83576 -12.74198 -12.60896 -12.48757 -12.44230 -12.21094 -12.13121 -12.03065 -11.88519 -11.74376 -11.54509 -11.46511 -11.35067 -10.68512 -10.44557 -9.66963 -9.62754 -9.28239 -8.20283 -6.35333 -0.12603 0.27870 1.16697 1.39368 1.44537 1.53658 1.91156 2.29715 2.43586 2.75691 3.07503 3.64624 3.86646 3.91043 3.95750 4.02635 4.08024 4.26554 4.32721 4.49997 4.58198 4.60101 4.75699 4.80965 4.86193 4.88618 4.91317 4.92773 4.96845 5.00278 5.05588 5.07839 5.16304 5.21383 5.24748 5.29441 5.35181 5.38349 5.49294 5.53968 5.57981 5.68730 5.87282 5.91733 6.05486 6.60434 6.82991 7.30349 7.42660 8.83105 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.007225 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.861424 B = 3874.469928 C = 6455.609143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.093 4.093 5 C -0.160 4.160 6 C 0.552 3.448 7 O -0.566 6.566 8 N -0.585 5.585 9 C 0.218 3.782 10 C -0.548 4.548 11 H 0.049 0.951 12 C 0.035 3.965 13 N -0.904 5.904 14 Si 0.948 3.052 15 H -0.276 1.276 16 H -0.278 1.278 17 H -0.274 1.274 18 C 0.130 3.870 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.120 4.120 23 C 0.001 3.999 24 Cl -0.057 7.057 25 C -0.133 4.133 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.172 0.828 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.270 0.730 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -8.397 -1.132 9.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.048 4.048 3 C -0.156 4.156 4 C -0.110 4.110 5 C -0.164 4.164 6 C 0.342 3.658 7 O -0.448 6.448 8 N -0.314 5.314 9 C 0.098 3.902 10 C -0.586 4.586 11 H 0.067 0.933 12 C -0.167 4.167 13 N -0.542 5.542 14 Si 0.773 3.227 15 H -0.201 1.201 16 H -0.204 1.204 17 H -0.199 1.199 18 C 0.007 3.993 19 C -0.081 4.081 20 C -0.191 4.191 21 C -0.187 4.187 22 C -0.178 4.178 23 C -0.026 4.026 24 Cl -0.028 7.028 25 C -0.151 4.151 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.158 0.842 30 H 0.188 0.812 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.664 -8.838 -0.963 9.616 hybrid contribution 0.357 1.059 0.499 1.224 sum -3.307 -7.779 -0.465 8.466 Atomic orbital electron populations 1.20921 0.87392 1.04507 1.03928 1.20446 0.98384 0.91329 0.94609 1.21362 0.93384 0.99163 1.01657 1.22844 0.96108 0.99278 0.92813 1.19902 0.93884 0.93603 1.09025 1.18262 0.87249 0.81568 0.78759 1.90675 1.70014 1.38368 1.45736 1.47943 1.07586 1.21432 1.54458 1.20123 0.93949 0.82133 0.94044 1.21581 1.33310 0.96349 1.07377 0.93306 1.25510 0.94399 1.00470 0.96352 1.70008 1.33029 1.27028 1.24175 0.85663 0.78223 0.79630 0.79145 1.20103 1.20408 1.19905 1.21462 0.79998 1.00368 0.97494 1.20934 0.97155 0.95309 0.94746 1.21887 1.00488 0.99522 0.97211 1.21728 0.92328 1.02218 1.02381 1.21701 0.98978 0.95858 1.01213 1.21127 0.93112 0.86192 1.02201 1.98354 1.77593 1.30257 1.96556 1.21096 0.90352 1.00075 1.03570 0.89352 0.89336 0.90137 0.84162 0.81172 0.95393 0.92322 0.92060 0.90976 0.91735 0.92963 0.91567 0.94203 0.92518 0.91066 0.91998 0.95440 0.91864 0.93372 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.00 71.24 0.71 -1.22 16 2 C -0.05 -1.27 5.88 -19.81 -0.12 -1.38 16 3 C -0.14 -4.56 9.68 22.23 0.22 -4.34 16 4 C -0.09 -3.77 7.44 22.53 0.17 -3.60 16 5 C -0.16 -6.62 5.54 -20.07 -0.11 -6.73 16 6 C 0.55 24.44 5.40 86.76 0.47 24.91 16 7 O -0.57 -26.12 12.96 -3.92 -0.05 -26.17 16 8 N -0.59 -25.41 2.02 -829.65 -1.67 -27.09 16 9 C 0.22 10.24 3.99 85.63 0.34 10.59 16 10 C -0.55 -27.66 7.54 25.60 0.19 -27.47 16 11 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 12 C 0.04 1.75 5.42 84.66 0.46 2.21 16 13 N -0.90 -46.65 13.29 21.45 0.28 -46.37 16 14 Si 0.95 40.30 29.54 68.60 2.03 42.33 16 15 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 C 0.13 5.01 4.56 86.38 0.39 5.40 16 19 C -0.08 -2.60 0.85 -52.18 -0.04 -2.65 16 20 C -0.13 -4.38 7.48 71.98 0.54 -3.84 16 21 C -0.13 -3.30 8.47 71.98 0.61 -2.69 16 22 C -0.12 -4.04 7.14 71.99 0.51 -3.53 16 23 C 0.00 0.05 6.34 22.60 0.14 0.19 16 24 Cl -0.06 -1.96 26.59 -2.72 -0.07 -2.03 16 25 C -0.13 -3.77 9.47 22.26 0.21 -3.56 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 28 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 29 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.17 7.95 3.58 -2.91 -0.01 7.94 16 31 H 0.03 1.39 5.66 -2.39 -0.01 1.38 16 32 H 0.06 2.87 3.90 -2.49 -0.01 2.86 16 33 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 34 H 0.07 2.83 8.02 -2.38 -0.02 2.81 16 35 H 0.06 2.56 7.36 -2.39 -0.02 2.54 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.51 5.76 -2.39 -0.01 1.49 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.03 1.03 6.65 -2.39 -0.02 1.02 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.74 7.33 -2.39 -0.02 1.72 16 45 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -58.11 364.59 6.20 -51.91 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.99 Total: 25.13 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.70 Total: -17.71 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.39 Total: -73.46 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.03 kcal Total: -58.11 6.20 -51.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191237362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.910 kcal (2) G-P(sol) polarization free energy of solvation -58.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds