Wall clock time and date at job start Tue Mar 31 2020 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47136 * 269.99904 * 3 2 1 5 5 H 1.48495 * 109.47266 * 30.00338 * 3 2 1 6 6 H 1.48504 * 109.46979 * 150.00255 * 3 2 1 7 7 C 1.37883 * 119.99251 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99164 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46712 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47085 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.46846 * 110.99617 * 294.20987 * 12 11 10 14 14 C 1.53040 * 109.51964 * 174.15808 * 13 12 11 15 15 C 1.53119 * 109.28089 * 59.17912 * 14 13 12 16 16 O 1.42900 * 109.57285 * 62.27774 * 15 14 13 17 17 C 1.50702 * 109.52418 * 182.43997 * 15 14 13 18 18 C 1.38231 * 120.00568 * 239.40712 * 17 15 14 19 19 C 1.38215 * 120.01151 * 179.77029 * 18 17 15 20 20 C 1.38264 * 120.02887 * 0.50609 * 19 18 17 21 21 C 1.38196 * 120.00791 * 359.74638 * 20 19 18 22 22 C 1.38328 * 120.00313 * 59.68078 * 17 15 14 23 23 Cl 1.73602 * 120.01870 * 359.95905 * 22 17 15 24 24 C 1.53124 * 109.15841 * 302.34776 * 15 14 13 25 25 C 1.46846 * 111.00204 * 169.99882 * 12 11 10 26 26 H 0.97003 * 119.99631 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47228 * 60.00429 * 9 7 2 28 28 H 1.09002 * 109.47225 * 299.99903 * 9 7 2 29 29 H 1.09002 * 109.47027 * 60.00179 * 10 9 7 30 30 H 1.09002 * 109.47093 * 299.99857 * 10 9 7 31 31 H 1.08997 * 109.47222 * 59.99601 * 11 10 9 32 32 H 1.09007 * 109.47397 * 300.00280 * 11 10 9 33 33 H 1.08996 * 109.46231 * 294.17554 * 13 12 11 34 34 H 1.09004 * 109.46418 * 54.14394 * 13 12 11 35 35 H 1.09004 * 109.50602 * 299.23671 * 14 13 12 36 36 H 1.09001 * 109.53370 * 179.14510 * 14 13 12 37 37 H 0.96700 * 113.99516 * 60.28916 * 16 15 14 38 38 H 1.08002 * 119.99409 * 359.97438 * 18 17 15 39 39 H 1.08008 * 119.98607 * 180.23292 * 19 18 17 40 40 H 1.07996 * 119.99177 * 179.77108 * 20 19 18 41 41 H 1.08004 * 120.00105 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.49853 * 297.70868 * 24 15 14 43 43 H 1.08994 * 109.53481 * 177.61659 * 24 15 14 44 44 H 1.09001 * 109.45990 * 305.85570 * 25 12 11 45 45 H 1.08997 * 109.46419 * 65.82250 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6368 -0.0022 12 7 6.0411 -4.0218 -0.0040 13 6 5.6864 -4.7069 1.2455 14 6 6.0820 -6.1822 1.1500 15 6 7.5889 -6.2863 0.8989 16 8 8.2983 -5.7182 2.0016 17 6 7.9748 -7.7348 0.7442 18 6 8.8972 -8.3002 1.6045 19 6 9.2477 -9.6299 1.4657 20 6 8.6838 -10.3927 0.4598 21 6 7.7653 -9.8272 -0.4041 22 6 7.4101 -8.4974 -0.2624 23 17 6.2560 -7.7865 -1.3471 24 6 7.9388 -5.5238 -0.3820 25 6 7.4894 -4.0677 -0.2421 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6806 0.8889 28 1 3.8745 -0.6801 -0.8911 29 1 3.6578 -3.1499 -0.8925 30 1 3.6584 -3.1512 0.8875 31 1 5.9147 -2.1237 0.8881 32 1 5.9149 -2.1222 -0.8918 33 1 6.2155 -4.2421 2.0774 34 1 4.6116 -4.6290 1.4100 35 1 5.5427 -6.6510 0.3269 36 1 5.8326 -6.6875 2.0830 37 1 8.1238 -6.1531 2.8475 38 1 9.3417 -7.7036 2.3874 39 1 9.9657 -10.0722 2.1406 40 1 8.9608 -11.4307 0.3496 41 1 7.3246 -10.4233 -1.1896 42 1 7.4287 -5.9823 -1.2292 43 1 9.0161 -5.5582 -0.5439 44 1 7.7242 -3.5255 -1.1580 45 1 8.0101 -3.6059 0.5967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193142615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:53 Heat of formation + Delta-G solvation = -32.708841 kcal Electronic energy + Delta-G solvation = -25293.599345 eV Core-core repulsion = 21722.369804 eV Total energy + Delta-G solvation = -3571.229542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70322 -38.71478 -36.82972 -36.57718 -34.02388 -32.72302 -31.62713 -31.13097 -30.86227 -29.89867 -26.78918 -24.43459 -23.32975 -23.02753 -22.25115 -21.28156 -19.89133 -19.80454 -18.05092 -16.69281 -16.50187 -16.21245 -15.79099 -15.20264 -15.10880 -14.61937 -14.33468 -14.21909 -14.16812 -13.99935 -13.69746 -13.51849 -12.98131 -12.64480 -12.42956 -12.21860 -12.17722 -12.00895 -11.83658 -11.71131 -11.41953 -11.30735 -10.98891 -10.77031 -10.68735 -10.47136 -10.21458 -10.16092 -9.83940 -9.59060 -9.48265 -9.28152 -9.10875 -8.95170 -8.48636 -7.97769 -5.99319 -3.96541 0.74532 0.84916 1.85264 3.20427 3.34290 3.41229 3.45568 3.92871 4.12693 4.20654 4.43417 4.49803 4.52629 4.71990 4.75221 4.88181 5.02833 5.20880 5.24408 5.34731 5.39990 5.45748 5.49444 5.59761 5.64692 5.65381 5.81063 5.81288 5.90279 5.93192 6.02273 6.07159 6.09900 6.13421 6.26047 6.31509 6.38539 6.63408 6.66377 6.99309 7.35326 7.36456 7.39162 7.46342 7.54744 7.86171 8.60655 9.06627 9.63657 11.14331 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002645 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.993127 B =10583.322530 C =11029.177417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C 0.055 3.945 12 N -0.536 5.536 13 C 0.060 3.940 14 C -0.153 4.153 15 C 0.176 3.824 16 O -0.548 6.548 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.032 4.032 23 Cl -0.042 7.042 24 C -0.111 4.111 25 C 0.061 3.939 26 H 0.262 0.738 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.373 0.627 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.795 -21.900 2.407 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.072 4.072 12 N -0.260 5.260 13 C -0.068 4.068 14 C -0.190 4.190 15 C 0.135 3.865 16 O -0.354 6.354 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.058 4.058 23 Cl -0.012 7.012 24 C -0.148 4.148 25 C -0.068 4.068 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.220 0.780 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.533 -21.558 1.452 30.505 hybrid contribution 0.470 0.927 1.035 1.467 sum 22.002 -20.631 2.487 30.265 Atomic orbital electron populations 1.69927 1.06288 1.26765 1.51516 1.25047 0.94734 0.99163 0.94705 0.86765 0.80332 0.83637 0.78463 1.20328 1.21486 1.19070 1.21159 0.89561 0.94409 1.50323 0.91055 1.19558 0.97098 0.92454 0.96038 1.21473 0.91105 0.99368 1.01518 1.22279 0.97861 0.87002 1.00087 1.61981 1.12606 1.16787 1.34651 1.21994 1.01455 0.92699 0.90649 1.22569 0.94699 0.98159 1.03610 1.20091 0.91441 0.86624 0.88308 1.86596 1.70091 1.60596 1.18103 1.20502 0.97191 0.97078 0.95164 1.21000 0.96726 0.95135 0.99267 1.21253 0.99758 0.93998 0.98214 1.21146 0.96642 1.00252 0.95026 1.21094 0.98328 0.93067 1.00289 1.20796 0.96263 0.93950 0.94837 1.98386 1.57545 1.82681 1.62608 1.21897 1.01390 0.95871 0.95653 1.21946 0.88432 0.95644 1.00732 0.92836 0.96906 0.97116 0.92057 0.92919 0.95434 0.91311 0.94704 0.89781 0.88343 0.91656 0.77967 0.84638 0.85375 0.85134 0.84795 0.88279 0.91387 0.90926 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.13 9.66 -34.43 -0.33 -15.46 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.99 5.08 -26.73 -0.14 -2.13 16 11 C 0.05 0.95 4.96 -3.83 -0.02 0.93 16 12 N -0.54 -8.13 4.66 -234.67 -1.09 -9.22 16 13 C 0.06 0.85 5.16 -3.83 -0.02 0.83 16 14 C -0.15 -1.80 4.85 -26.65 -0.13 -1.93 16 15 C 0.18 1.89 0.71 -91.65 -0.07 1.83 16 16 O -0.55 -5.61 10.85 -35.23 -0.38 -6.00 16 17 C -0.10 -0.95 4.79 -104.59 -0.50 -1.45 16 18 C -0.10 -0.81 9.22 -39.59 -0.36 -1.18 16 19 C -0.11 -0.76 10.05 -39.58 -0.40 -1.15 16 20 C -0.11 -0.74 10.05 -39.59 -0.40 -1.14 16 21 C -0.11 -0.87 9.83 -39.55 -0.39 -1.26 16 22 C -0.03 -0.31 6.03 -39.50 -0.24 -0.55 16 23 Cl -0.04 -0.45 22.48 -51.86 -1.17 -1.62 16 24 C -0.11 -1.31 4.87 -26.65 -0.13 -1.44 16 25 C 0.06 0.81 5.33 -3.84 -0.02 0.79 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.05 1.08 6.43 -51.93 -0.33 0.75 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 32 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 33 H 0.03 0.50 7.76 -51.93 -0.40 0.10 16 34 H 0.08 1.29 6.21 -51.93 -0.32 0.96 16 35 H 0.10 1.24 4.88 -51.93 -0.25 0.98 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.37 2.55 8.10 45.56 0.37 2.92 16 38 H 0.14 0.86 6.61 -52.49 -0.35 0.52 16 39 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.10 1.20 4.92 -51.93 -0.26 0.94 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 45 H 0.04 0.53 7.76 -51.93 -0.40 0.13 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -32.56 356.72 -10.60 -43.16 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.09 Total: 0.40 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.35 Total: -21.93 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.32 Total: -36.97 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.17 Total: -1.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.56 -10.60 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193142615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.450 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds