Wall clock time and date at job start Tue Mar 31 2020 15:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36539 * 120.88037 * 2 1 4 4 C 1.40234 * 119.82687 * 179.97438 * 3 2 1 5 5 C 1.48275 * 119.24458 * 179.97438 * 4 3 2 6 6 O 1.21497 * 120.00029 * 6.28422 * 5 4 3 7 7 N 1.34779 * 119.99974 * 186.27983 * 5 4 3 8 8 C 1.46495 * 120.00089 * 5.43341 * 7 5 4 9 9 C 1.50702 * 109.47407 * 274.78692 * 8 7 5 10 10 H 1.07993 * 119.99632 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00104 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00153 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47008 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47342 * 119.99606 * 13 11 9 16 16 H 1.48495 * 109.47080 * 240.00052 * 13 11 9 17 17 C 1.46496 * 119.99956 * 185.43836 * 7 5 4 18 18 C 1.53002 * 109.46809 * 268.27590 * 17 7 5 19 19 C 1.47198 * 109.46977 * 180.02562 * 18 17 7 20 20 N 9.25261 * 134.13468 * 349.74214 * 2 1 3 21 21 N 1.31906 * 121.51571 * 0.25952 * 4 3 2 22 22 C 1.33251 * 121.29672 * 359.47542 * 21 4 3 23 23 C 1.40829 * 120.98450 * 180.26558 * 22 21 4 24 24 C 1.35991 * 119.73440 * 180.25348 * 23 22 21 25 25 C 1.39436 * 121.08847 * 0.02562 * 24 23 22 26 26 C 1.36134 * 120.92352 * 359.94034 * 25 24 23 27 27 C 1.40434 * 119.64762 * 0.08055 * 26 25 24 28 28 H 1.09001 * 109.46676 * 90.00119 * 1 2 3 29 29 H 1.09000 * 109.46952 * 209.99651 * 1 2 3 30 30 H 1.09000 * 109.47224 * 330.00028 * 1 2 3 31 31 H 1.08003 * 120.08523 * 359.95258 * 3 2 1 32 32 H 1.09001 * 109.47006 * 34.78714 * 8 7 5 33 33 H 1.08997 * 109.47411 * 154.78436 * 8 7 5 34 34 H 0.96994 * 119.99528 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.46996 * 28.27178 * 17 7 5 36 36 H 1.08999 * 109.47300 * 148.27486 * 17 7 5 37 37 H 1.09004 * 109.47005 * 299.99582 * 18 17 7 38 38 H 1.08999 * 109.47274 * 59.99881 * 18 17 7 39 39 H 1.08002 * 120.13077 * 0.22414 * 23 22 21 40 40 H 1.07994 * 119.45364 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.53863 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.17547 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6099 1.1461 0.0005 5 6 4.3579 2.4263 0.0000 6 8 3.7614 3.4785 0.1142 7 7 5.6997 2.4227 -0.1272 8 6 6.4078 1.1662 -0.3840 9 6 6.6790 0.4663 0.9228 10 1 6.3558 0.9125 1.8516 11 6 7.3397 -0.7439 0.9325 12 7 7.7329 -1.2876 -0.1987 13 14 7.6765 -1.6112 2.5523 14 1 7.1373 -0.7971 3.6711 15 1 7.0192 -2.9428 2.5469 16 1 9.1412 -1.7827 2.7267 17 6 6.4500 3.6753 -0.0086 18 6 6.6143 4.3045 -1.3935 19 6 7.3688 5.5628 -1.2745 20 7 7.9500 6.5345 -1.1826 21 7 4.2786 0.0091 -0.0040 22 6 3.6481 -1.1648 0.0011 23 6 4.3687 -2.3748 0.0017 24 6 3.6993 -3.5585 0.0017 25 6 2.3055 -3.5974 0.0006 26 6 1.5736 -2.4496 0.0006 27 6 2.2292 -1.2077 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6836 2.1161 -0.0008 32 1 5.7943 0.5265 -1.0183 33 1 7.3521 1.3773 -0.8859 34 1 8.1980 -2.1387 -0.1918 35 1 5.9085 4.3631 0.6410 36 1 7.4327 3.4714 0.4167 37 1 7.1558 3.6167 -2.0431 38 1 5.6317 4.5084 -1.8189 39 1 5.4487 -2.3626 0.0017 40 1 4.2564 -4.4837 0.0027 41 1 1.7994 -4.5515 0.0002 42 1 0.4945 -2.4938 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195043478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:13 Heat of formation + Delta-G solvation = 50.426274 kcal Electronic energy + Delta-G solvation = -27073.858670 eV Core-core repulsion = 23405.126643 eV Total energy + Delta-G solvation = -3668.732027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.97887 -40.52535 -38.04215 -37.61766 -36.87739 -35.50003 -34.51377 -32.66704 -31.37538 -31.06572 -28.95176 -28.50526 -26.50594 -24.99037 -24.39167 -24.00957 -22.07021 -20.44947 -18.91026 -18.81815 -18.47547 -18.20524 -17.59733 -16.93583 -16.50154 -16.18160 -16.04386 -15.66449 -15.46723 -15.22655 -14.99546 -14.66001 -14.43140 -14.16960 -14.16047 -13.92438 -13.77304 -13.57385 -13.50925 -13.18577 -12.99456 -12.84454 -12.74163 -12.71542 -12.44085 -12.22096 -12.14852 -12.03621 -11.79025 -11.56891 -11.11792 -10.98695 -10.34240 -9.74586 -9.68211 -9.41929 -9.00111 -7.98361 -5.97706 -0.57076 -0.16633 1.14965 1.37353 1.43336 1.48724 1.51984 1.67339 1.77853 2.20357 2.41320 2.51876 3.09981 3.25695 3.36541 3.39405 3.69581 3.74902 3.94846 4.03975 4.09897 4.12860 4.31657 4.37487 4.47297 4.53473 4.60471 4.70491 4.80255 4.87081 4.90340 4.99928 5.05275 5.15033 5.23356 5.25754 5.29817 5.55233 5.56348 5.61633 5.76200 5.88602 5.95645 6.06942 6.35366 6.52423 6.54311 6.95542 7.07063 7.33729 7.61712 9.08802 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.005518 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.073164 B = 5073.528719 C = 7216.100173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.041 4.041 3 C -0.140 4.140 4 C 0.072 3.928 5 C 0.565 3.435 6 O -0.575 6.575 7 N -0.578 5.578 8 C 0.255 3.745 9 C -0.482 4.482 10 H 0.030 0.970 11 C 0.045 3.955 12 N -0.907 5.907 13 Si 0.912 3.088 14 H -0.287 1.287 15 H -0.277 1.277 16 H -0.283 1.283 17 C 0.121 3.879 18 C -0.029 4.029 19 C 0.246 3.754 20 N -0.488 5.488 21 N -0.390 5.390 22 C 0.090 3.910 23 C -0.102 4.102 24 C -0.118 4.118 25 C -0.101 4.101 26 C -0.107 4.107 27 C -0.099 4.099 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 -5.046 -2.662 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.049 4.049 3 C -0.161 4.161 4 C -0.081 4.081 5 C 0.353 3.647 6 O -0.456 6.456 7 N -0.306 5.306 8 C 0.135 3.865 9 C -0.521 4.521 10 H 0.049 0.951 11 C -0.154 4.154 12 N -0.549 5.549 13 Si 0.740 3.260 14 H -0.212 1.212 15 H -0.203 1.203 16 H -0.210 1.210 17 C -0.004 4.004 18 C -0.070 4.070 19 C -0.071 4.071 20 N -0.166 5.166 21 N -0.101 5.101 22 C -0.033 4.033 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.102 4.102 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.974 -3.274 -2.541 13.620 hybrid contribution 0.091 -0.831 1.073 1.360 sum -12.883 -4.106 -1.468 13.601 Atomic orbital electron populations 1.20908 0.86463 1.04769 1.04335 1.20435 0.98642 0.90498 0.95340 1.21652 0.92862 1.00324 1.01214 1.21399 0.92249 0.92613 1.01790 1.18185 0.82485 0.87465 0.76561 1.90652 1.69161 1.32129 1.53677 1.48133 1.05504 1.10043 1.66891 1.19552 0.91451 0.79174 0.96360 1.21227 1.33789 1.04668 0.92452 0.95143 1.24997 0.96230 0.97229 0.96966 1.69981 1.40648 1.18690 1.25538 0.86240 0.77653 0.79373 0.82699 1.21238 1.20279 1.20952 1.21305 0.97798 0.85493 0.95767 1.19675 1.00376 0.86875 1.00123 1.29156 0.92194 0.93984 0.91747 1.81204 1.11933 1.13440 1.10014 1.69019 1.37558 0.97284 1.06239 1.19414 0.90833 0.92749 1.00290 1.21325 1.01261 0.91345 0.98187 1.21220 0.95804 0.97513 0.99265 1.21349 0.92992 1.00066 0.97479 1.21357 1.01532 0.89963 0.99686 1.19218 0.93248 0.96106 1.01585 0.88713 0.88997 0.89825 0.83218 0.92517 0.95887 0.93076 0.90136 0.89244 0.85302 0.85991 0.85927 0.84021 0.81751 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.59 71.24 0.68 -1.02 16 2 C -0.04 -1.11 5.92 -19.66 -0.12 -1.22 16 3 C -0.14 -4.52 9.22 22.36 0.21 -4.31 16 4 C 0.07 2.88 6.58 42.29 0.28 3.16 16 5 C 0.57 22.85 7.61 86.91 0.66 23.51 16 6 O -0.58 -23.51 15.91 -3.71 -0.06 -23.57 16 7 N -0.58 -22.62 2.47 -829.10 -2.05 -24.66 16 8 C 0.25 11.52 4.75 85.63 0.41 11.93 16 9 C -0.48 -24.32 7.46 25.60 0.19 -24.13 16 10 H 0.03 1.64 7.81 -2.91 -0.02 1.62 16 11 C 0.04 2.27 4.60 84.65 0.39 2.66 16 12 N -0.91 -47.02 12.59 21.45 0.27 -46.75 16 13 Si 0.91 41.82 29.54 68.60 2.03 43.85 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 C 0.12 3.86 5.32 86.38 0.46 4.32 16 18 C -0.03 -0.74 6.03 28.79 0.17 -0.57 16 19 C 0.25 6.90 15.43 89.44 1.38 8.28 16 20 N -0.49 -16.07 18.54 20.01 0.37 -15.69 16 21 N -0.39 -16.82 4.70 -177.77 -0.84 -17.66 16 22 C 0.09 3.52 6.61 40.48 0.27 3.79 16 23 C -0.10 -3.92 9.99 22.38 0.22 -3.70 16 24 C -0.12 -3.36 9.94 22.04 0.22 -3.14 16 25 C -0.10 -2.16 9.95 22.07 0.22 -1.94 16 26 C -0.11 -2.36 9.31 22.31 0.21 -2.15 16 27 C -0.10 -3.01 5.75 -21.22 -0.12 -3.14 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.08 6.51 -2.39 -0.02 1.06 16 30 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.15 4.37 7.62 -2.91 -0.02 4.35 16 32 H 0.06 2.79 5.71 -2.39 -0.01 2.78 16 33 H 0.02 1.06 8.04 -2.39 -0.02 1.05 16 34 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 35 H 0.08 2.60 7.45 -2.38 -0.02 2.59 16 36 H 0.09 2.85 8.09 -2.39 -0.02 2.84 16 37 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 38 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.12 5.53 6.40 -2.91 -0.02 5.51 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.17 2.24 6.44 -2.91 -0.02 2.22 16 Total: -1.00 -65.64 360.10 6.51 -59.12 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.06 Total: 13.05 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.73 Total: 12.32 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -2.24 Total: -104.76 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.06 Total: -23.57 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -65.64 6.51 -59.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.547 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds