Wall clock time and date at job start Tue Mar 31 2020 15:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31945 * 120.49238 * 2 1 4 4 C 1.32724 * 120.89842 * 180.02562 * 3 2 1 5 5 C 1.48159 * 119.04471 * 179.97438 * 4 3 2 6 6 C 1.39467 * 120.13258 * 359.72443 * 5 4 3 7 7 C 1.37982 * 119.86554 * 179.74636 * 6 5 4 8 8 C 1.38343 * 120.13466 * 0.55563 * 7 6 5 9 9 C 1.38352 * 120.26705 * 359.69774 * 8 7 6 10 10 C 1.37989 * 120.13127 * 0.02562 * 9 8 7 11 11 N 1.32749 * 121.91363 * 359.74472 * 4 3 2 12 12 C 1.31916 * 120.89573 * 0.52486 * 11 4 3 13 13 C 1.40143 * 120.49817 * 180.02562 * 2 1 3 14 14 C 1.47568 * 120.86347 * 359.97438 * 13 2 1 15 15 O 1.21617 * 119.99907 * 315.15839 * 14 13 2 16 16 N 1.34781 * 120.00079 * 135.15715 * 14 13 2 17 17 C 1.36853 * 119.99806 * 183.93134 * 16 14 13 18 18 H 1.08003 * 119.99375 * 134.05138 * 17 16 14 19 19 C 1.39058 * 120.00395 * 314.04747 * 17 16 14 20 20 N 1.31359 * 119.99452 * 338.98671 * 19 17 16 21 21 Si 1.86790 * 120.00204 * 158.98526 * 19 17 16 22 22 H 1.48499 * 109.47281 * 59.99939 * 21 19 17 23 23 H 1.48499 * 109.47476 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46943 * 300.00049 * 21 19 17 25 25 C 1.46494 * 119.99655 * 3.93103 * 16 14 13 26 26 C 1.53006 * 117.49795 * 182.97953 * 25 16 14 27 27 C 1.52999 * 117.49655 * 114.32191 * 25 16 14 28 28 H 1.09005 * 109.47278 * 270.94908 * 1 2 3 29 29 H 1.09008 * 109.47105 * 30.94895 * 1 2 3 30 30 H 1.08996 * 109.47416 * 150.94713 * 1 2 3 31 31 H 1.08001 * 120.06484 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.93261 * 180.27254 * 7 6 5 33 33 H 1.07997 * 119.86843 * 179.72096 * 8 7 6 34 34 H 1.07997 * 119.93647 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.06769 * 180.02562 * 10 9 8 36 36 H 1.08010 * 120.49408 * 179.76320 * 12 11 4 37 37 H 0.97005 * 119.99704 * 185.04353 * 20 19 17 38 38 H 1.08995 * 115.55519 * 328.64604 * 25 16 14 39 39 H 1.09003 * 117.49491 * 0.02562 * 26 25 16 40 40 H 1.08999 * 117.50008 * 145.01728 * 26 25 16 41 41 H 1.09008 * 117.49581 * 214.97647 * 27 25 16 42 42 H 1.08998 * 117.50322 * 359.97271 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1370 0.0000 4 6 3.5037 1.1464 -0.0005 5 6 4.2138 2.4467 -0.0011 6 6 3.4907 3.6393 -0.0069 7 6 4.1577 4.8472 -0.0020 8 6 5.5408 4.8769 -0.0031 9 6 6.2636 3.6972 -0.0027 10 6 5.6079 2.4831 -0.0017 11 7 4.2134 0.0245 0.0040 12 6 3.6190 -1.1531 -0.0012 13 6 2.2182 -1.2075 -0.0005 14 6 1.5110 -2.5027 -0.0006 15 8 0.5644 -2.6786 0.7425 16 7 1.9140 -3.4906 -0.8240 17 6 1.2098 -4.6626 -0.8826 18 1 0.9679 -5.0999 -1.8400 19 6 0.8057 -5.2904 0.2906 20 7 1.4172 -5.0239 1.4222 21 14 -0.6065 -6.5125 0.2573 22 1 -0.2674 -7.6362 -0.6524 23 1 -0.8398 -7.0369 1.6269 24 1 -1.8356 -5.8355 -0.2290 25 6 3.1059 -3.3098 -1.6563 26 6 3.4721 -4.4397 -2.6209 27 6 4.3135 -4.2028 -1.3643 28 1 -0.3634 0.0170 1.0276 29 1 -0.3634 0.8814 -0.5285 30 1 -0.3634 -0.8983 -0.4990 31 1 2.4110 3.6173 -0.0105 32 1 3.5988 5.7714 -0.0021 33 1 6.0584 5.8248 -0.0039 34 1 7.3432 3.7267 -0.0031 35 1 6.1732 1.5629 -0.0010 36 1 4.2029 -2.0618 -0.0013 37 1 1.1851 -5.5145 2.2262 38 1 3.3023 -2.2879 -1.9806 39 1 2.8258 -5.3173 -2.6364 40 1 3.9096 -4.1611 -3.5795 41 1 5.3044 -3.7683 -1.4968 42 1 4.2213 -4.9244 -0.5527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268790411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:23 Heat of formation + Delta-G solvation = 82.624279 kcal Electronic energy + Delta-G solvation = -26715.961283 eV Core-core repulsion = 23048.625467 eV Total energy + Delta-G solvation = -3667.335816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89661 -39.04815 -38.32359 -36.24099 -34.09489 -33.24797 -32.72792 -31.15420 -30.96997 -30.10370 -28.28679 -25.56165 -24.45039 -23.25319 -22.15804 -21.90014 -21.40498 -21.11375 -19.70417 -17.56197 -17.30932 -16.83485 -16.27409 -15.84638 -15.30821 -14.73723 -14.68496 -14.59384 -14.25327 -13.74882 -13.56108 -13.42326 -13.21949 -13.14844 -12.87888 -12.66388 -12.42315 -12.13345 -11.87665 -11.46902 -11.33400 -11.11141 -11.08129 -10.94506 -10.89804 -10.56514 -10.41991 -10.24912 -10.03036 -9.80228 -9.56475 -8.98228 -8.94594 -8.84464 -8.43175 -8.19863 -7.20072 -6.30495 -4.03571 0.49714 1.38090 1.41562 1.69017 3.22025 3.30073 3.33199 3.57312 3.89439 3.95877 4.13480 4.26963 4.32669 4.62201 4.66789 4.86877 4.89563 4.95629 5.05025 5.05909 5.28390 5.44694 5.46350 5.49132 5.54821 5.60832 5.70688 5.81580 5.87644 5.92169 5.99370 6.01972 6.17242 6.21647 6.31246 6.36867 6.43058 6.45858 6.61228 6.72104 6.77371 6.88904 6.90515 7.29698 7.47024 8.10296 8.33357 8.83282 8.93540 9.42521 10.04290 10.77169 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.003439 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.635762 B = 8140.526238 C = 8941.057186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.208 3.792 3 N -0.515 5.515 4 C 0.342 3.658 5 C -0.035 4.035 6 C -0.074 4.074 7 C -0.133 4.133 8 C -0.108 4.108 9 C -0.132 4.132 10 C -0.074 4.074 11 N -0.518 5.518 12 C 0.168 3.832 13 C -0.197 4.197 14 C 0.520 3.480 15 O -0.522 6.522 16 N -0.407 5.407 17 C -0.351 4.351 18 H 0.085 0.915 19 C 0.078 3.922 20 N -0.821 5.821 21 Si 0.915 3.085 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.057 3.943 26 C -0.174 4.174 27 C -0.196 4.196 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.177 0.823 37 H 0.269 0.731 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 13.082 -4.526 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 N -0.230 5.230 4 C 0.077 3.923 5 C -0.037 4.037 6 C -0.094 4.094 7 C -0.151 4.151 8 C -0.127 4.127 9 C -0.150 4.150 10 C -0.094 4.094 11 N -0.232 5.232 12 C 0.001 3.999 13 C -0.205 4.205 14 C 0.306 3.694 15 O -0.400 6.400 16 N -0.126 5.126 17 C -0.477 4.477 18 H 0.102 0.898 19 C -0.135 4.135 20 N -0.453 5.453 21 Si 0.742 3.258 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.048 4.048 26 C -0.211 4.211 27 C -0.235 4.235 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.194 0.806 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.024 13.797 -3.902 15.966 hybrid contribution -0.781 -1.551 0.152 1.744 sum 6.243 12.246 -3.749 14.248 Atomic orbital electron populations 1.20758 0.87141 1.03583 1.04044 1.21727 0.97607 0.86431 0.88215 1.68091 1.08754 1.30192 1.15964 1.21206 0.86298 0.91898 0.92870 1.18127 0.92695 0.89248 1.03659 1.21359 1.00933 0.90963 0.96160 1.21091 0.94481 0.97694 1.01805 1.21286 0.94312 0.98222 0.98848 1.21098 1.00004 0.92180 1.01764 1.21364 0.93169 0.98737 0.96100 1.68247 1.41033 0.98383 1.15557 1.23680 0.91603 0.95655 0.88968 1.22274 0.96135 0.97995 1.04129 1.17299 0.85197 0.81562 0.85307 1.90657 1.29290 1.80537 1.39532 1.42644 1.20607 1.12681 1.36679 1.18924 1.34684 1.00887 0.93199 0.89785 1.25332 0.96789 0.96304 0.95061 1.69800 1.37402 1.37651 1.00414 0.86226 0.82607 0.79715 0.77257 1.20220 1.21086 1.19653 1.21908 0.89293 0.94429 0.99209 1.23105 1.03465 1.01591 0.92984 1.23335 0.94538 1.05069 1.00567 0.89402 0.90921 0.89151 0.84595 0.85749 0.86072 0.85718 0.84520 0.80643 0.92105 0.88132 0.87418 0.89776 0.89742 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.27 36.00 0.33 -1.37 16 2 C 0.21 4.03 6.86 -81.83 -0.56 3.47 16 3 N -0.52 -9.40 9.36 -7.08 -0.07 -9.47 16 4 C 0.34 6.04 7.55 -156.77 -1.18 4.86 16 5 C -0.04 -0.53 5.88 -104.91 -0.62 -1.14 16 6 C -0.07 -0.96 9.56 -39.22 -0.38 -1.34 16 7 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 8 C -0.11 -1.03 10.04 -39.50 -0.40 -1.43 16 9 C -0.13 -1.37 10.03 -39.63 -0.40 -1.77 16 10 C -0.07 -0.96 9.56 -39.22 -0.38 -1.33 16 11 N -0.52 -9.37 9.42 -10.81 -0.10 -9.48 16 12 C 0.17 3.21 8.92 -16.78 -0.15 3.06 16 13 C -0.20 -4.15 5.16 -104.65 -0.54 -4.69 16 14 C 0.52 12.77 5.95 -12.45 -0.07 12.70 16 15 O -0.52 -14.55 13.30 5.26 0.07 -14.48 16 16 N -0.41 -9.71 2.81 -108.89 -0.31 -10.01 16 17 C -0.35 -8.99 7.99 -15.01 -0.12 -9.11 16 18 H 0.08 2.08 7.10 -52.48 -0.37 1.70 16 19 C 0.08 2.07 4.29 -17.45 -0.07 1.99 16 20 N -0.82 -23.02 11.98 55.50 0.67 -22.35 16 21 Si 0.92 20.85 29.61 -169.99 -5.03 15.82 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.06 1.11 4.45 -67.93 -0.30 0.81 16 26 C -0.17 -2.98 9.81 -26.69 -0.26 -3.24 16 27 C -0.20 -3.44 9.49 -26.69 -0.25 -3.70 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.09 1.72 6.68 -51.93 -0.35 1.37 16 31 H 0.14 1.75 7.50 -52.49 -0.39 1.35 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.75 7.50 -52.49 -0.39 1.36 16 36 H 0.18 3.24 5.93 -52.48 -0.31 2.93 16 37 H 0.27 7.26 8.32 -40.82 -0.34 6.92 16 38 H 0.10 1.83 6.27 -51.93 -0.33 1.50 16 39 H 0.11 2.01 6.62 -51.93 -0.34 1.66 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -30.76 353.43 -10.20 -40.95 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.00 Total: 7.70 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -5.75 Total: -4.01 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.19 Total: -51.31 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.07 Total: -14.48 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.76 -10.20 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268790411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.576 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds