Wall clock time and date at job start Tue Mar 31 2020 15:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31945 * 120.49238 * 2 1 4 4 C 1.32724 * 120.89842 * 180.02562 * 3 2 1 5 5 C 1.48159 * 119.04471 * 179.97438 * 4 3 2 6 6 C 1.39467 * 120.13258 * 359.72443 * 5 4 3 7 7 C 1.37982 * 119.86554 * 179.74636 * 6 5 4 8 8 C 1.38343 * 120.13466 * 0.55563 * 7 6 5 9 9 C 1.38352 * 120.26705 * 359.69774 * 8 7 6 10 10 C 1.37989 * 120.13127 * 0.02562 * 9 8 7 11 11 N 1.32749 * 121.91363 * 359.74472 * 4 3 2 12 12 C 1.31916 * 120.89573 * 0.52486 * 11 4 3 13 13 C 1.40143 * 120.49817 * 180.02562 * 2 1 3 14 14 C 1.47568 * 120.86347 * 359.97438 * 13 2 1 15 15 O 1.21617 * 119.99907 * 315.15839 * 14 13 2 16 16 N 1.34781 * 120.00079 * 135.15715 * 14 13 2 17 17 C 1.36853 * 119.99806 * 183.93134 * 16 14 13 18 18 H 1.08003 * 119.99375 * 134.05138 * 17 16 14 19 19 C 1.39058 * 120.00395 * 314.04747 * 17 16 14 20 20 N 1.31359 * 119.99452 * 338.98671 * 19 17 16 21 21 Si 1.86790 * 120.00204 * 158.98526 * 19 17 16 22 22 H 1.48499 * 109.47281 * 59.99939 * 21 19 17 23 23 H 1.48499 * 109.47476 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46943 * 300.00049 * 21 19 17 25 25 C 1.46494 * 119.99655 * 3.93103 * 16 14 13 26 26 C 1.53006 * 117.49795 * 182.97953 * 25 16 14 27 27 C 1.52999 * 117.49655 * 114.32191 * 25 16 14 28 28 H 1.09005 * 109.47278 * 270.94908 * 1 2 3 29 29 H 1.09008 * 109.47105 * 30.94895 * 1 2 3 30 30 H 1.08996 * 109.47416 * 150.94713 * 1 2 3 31 31 H 1.08001 * 120.06484 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.93261 * 180.27254 * 7 6 5 33 33 H 1.07997 * 119.86843 * 179.72096 * 8 7 6 34 34 H 1.07997 * 119.93647 * 180.02562 * 9 8 7 35 35 H 1.07992 * 120.06769 * 180.02562 * 10 9 8 36 36 H 1.08010 * 120.49408 * 179.76320 * 12 11 4 37 37 H 0.97005 * 119.99704 * 185.04353 * 20 19 17 38 38 H 1.08995 * 115.55519 * 328.64604 * 25 16 14 39 39 H 1.09003 * 117.49491 * 0.02562 * 26 25 16 40 40 H 1.08999 * 117.50008 * 145.01728 * 26 25 16 41 41 H 1.09008 * 117.49581 * 214.97647 * 27 25 16 42 42 H 1.08998 * 117.50322 * 359.97271 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1370 0.0000 4 6 3.5037 1.1464 -0.0005 5 6 4.2138 2.4467 -0.0011 6 6 3.4907 3.6393 -0.0069 7 6 4.1577 4.8472 -0.0020 8 6 5.5408 4.8769 -0.0031 9 6 6.2636 3.6972 -0.0027 10 6 5.6079 2.4831 -0.0017 11 7 4.2134 0.0245 0.0040 12 6 3.6190 -1.1531 -0.0012 13 6 2.2182 -1.2075 -0.0005 14 6 1.5110 -2.5027 -0.0006 15 8 0.5644 -2.6786 0.7425 16 7 1.9140 -3.4906 -0.8240 17 6 1.2098 -4.6626 -0.8826 18 1 0.9679 -5.0999 -1.8400 19 6 0.8057 -5.2904 0.2906 20 7 1.4172 -5.0239 1.4222 21 14 -0.6065 -6.5125 0.2573 22 1 -0.2674 -7.6362 -0.6524 23 1 -0.8398 -7.0369 1.6269 24 1 -1.8356 -5.8355 -0.2290 25 6 3.1059 -3.3098 -1.6563 26 6 3.4721 -4.4397 -2.6209 27 6 4.3135 -4.2028 -1.3643 28 1 -0.3634 0.0170 1.0276 29 1 -0.3634 0.8814 -0.5285 30 1 -0.3634 -0.8983 -0.4990 31 1 2.4110 3.6173 -0.0105 32 1 3.5988 5.7714 -0.0021 33 1 6.0584 5.8248 -0.0039 34 1 7.3432 3.7267 -0.0031 35 1 6.1732 1.5629 -0.0010 36 1 4.2029 -2.0618 -0.0013 37 1 1.1851 -5.5145 2.2262 38 1 3.3023 -2.2879 -1.9806 39 1 2.8258 -5.3173 -2.6364 40 1 3.9096 -4.1611 -3.5795 41 1 5.3044 -3.7683 -1.4968 42 1 4.2213 -4.9244 -0.5527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268790411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:22 Heat of formation + Delta-G solvation = 66.182387 kcal Electronic energy + Delta-G solvation = -26716.674257 eV Core-core repulsion = 23048.625467 eV Total energy + Delta-G solvation = -3668.048790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36134 -40.41093 -39.61152 -37.91559 -35.55792 -34.95055 -34.25432 -32.92499 -31.86652 -31.30084 -29.78215 -27.24781 -25.97681 -24.52312 -23.41845 -23.24676 -22.75298 -22.42150 -21.40284 -19.04705 -18.65020 -18.32572 -17.98008 -17.08286 -16.84228 -16.35559 -16.01854 -15.71960 -15.51171 -15.42682 -15.11861 -14.80009 -14.53784 -14.29920 -14.18422 -14.09172 -13.91296 -13.49567 -13.32787 -13.14765 -12.84743 -12.74696 -12.58702 -12.22315 -12.19499 -12.09174 -11.96158 -11.73328 -11.62414 -11.27995 -10.88873 -10.76767 -10.42008 -10.20870 -9.85052 -9.47119 -9.06254 -8.28450 -6.04915 -0.80629 -0.08753 0.51564 0.56652 1.37578 1.46558 1.49745 2.10334 2.30558 2.56180 2.60707 2.88240 2.90200 3.03749 3.05303 3.26813 3.37551 3.77249 3.95895 4.00995 4.06989 4.08677 4.17376 4.22040 4.31318 4.33995 4.46588 4.58436 4.59481 4.63553 4.78843 4.86447 4.91486 4.95674 5.02539 5.18692 5.21815 5.26291 5.42933 5.49409 5.54578 5.57772 5.62677 5.81732 6.05873 6.15566 6.87662 6.91920 7.05538 7.53247 8.17229 8.79548 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.003439 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.635762 B = 8140.526238 C = 8941.057186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.207 3.793 3 N -0.517 5.517 4 C 0.347 3.653 5 C -0.073 4.073 6 C -0.083 4.083 7 C -0.131 4.131 8 C -0.093 4.093 9 C -0.130 4.130 10 C -0.082 4.082 11 N -0.520 5.520 12 C 0.180 3.820 13 C -0.228 4.228 14 C 0.516 3.484 15 O -0.569 6.569 16 N -0.420 5.420 17 C -0.361 4.361 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.861 5.861 21 Si 0.971 3.029 22 H -0.255 1.255 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.035 3.965 26 C -0.156 4.156 27 C -0.183 4.183 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.180 0.820 37 H 0.263 0.737 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 15.887 -5.951 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 N -0.232 5.232 4 C 0.084 3.916 5 C -0.075 4.075 6 C -0.103 4.103 7 C -0.148 4.148 8 C -0.111 4.111 9 C -0.148 4.148 10 C -0.102 4.102 11 N -0.234 5.234 12 C 0.013 3.987 13 C -0.236 4.236 14 C 0.304 3.696 15 O -0.450 6.450 16 N -0.138 5.138 17 C -0.488 4.488 18 H 0.106 0.894 19 C -0.176 4.176 20 N -0.495 5.495 21 Si 0.795 3.205 22 H -0.179 1.179 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.070 4.070 26 C -0.194 4.194 27 C -0.222 4.222 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.197 0.803 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.108 0.892 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.103 16.596 -5.371 19.676 hybrid contribution -1.259 -2.130 0.541 2.533 sum 7.843 14.466 -4.830 17.150 Atomic orbital electron populations 1.20706 0.86169 1.03856 1.04058 1.21999 0.98466 0.86336 0.87211 1.68220 1.09123 1.29146 1.16707 1.21980 0.86344 0.93077 0.90207 1.18255 0.93646 0.88340 1.07239 1.21451 1.00840 0.91464 0.96528 1.21452 0.95278 0.97648 1.00448 1.21778 0.94035 0.99498 0.95812 1.21461 1.01589 0.91345 1.00398 1.21458 0.92382 0.99919 0.96440 1.68369 1.40607 0.98118 1.16290 1.23688 0.90833 0.96341 0.87866 1.22004 0.96937 0.96852 1.07823 1.17748 0.84797 0.82652 0.84413 1.90600 1.31352 1.81718 1.41356 1.42796 1.21965 1.12126 1.36933 1.19162 1.35093 1.01344 0.93231 0.89416 1.26096 0.98529 0.98139 0.94841 1.69914 1.39242 1.39451 1.00880 0.85367 0.79488 0.78369 0.77253 1.17937 1.21473 1.20440 1.22072 0.88684 0.95940 1.00284 1.23177 1.02317 0.99571 0.94291 1.23275 0.95574 1.03494 0.99836 0.89554 0.87899 0.91316 0.85225 0.82860 0.82314 0.82809 0.85095 0.80294 0.92785 0.86844 0.89204 0.85917 0.86137 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 9.27 71.24 0.66 -2.58 16 2 C 0.21 8.22 6.86 43.00 0.30 8.52 16 3 N -0.52 -18.88 9.36 -176.33 -1.65 -20.53 16 4 C 0.35 12.18 7.55 137.40 1.04 13.22 16 5 C -0.07 -2.07 5.88 -20.05 -0.12 -2.19 16 6 C -0.08 -1.99 9.56 22.51 0.22 -1.77 16 7 C -0.13 -2.20 10.03 22.23 0.22 -1.98 16 8 C -0.09 -1.32 10.04 22.32 0.22 -1.09 16 9 C -0.13 -2.19 10.03 22.24 0.22 -1.96 16 10 C -0.08 -1.96 9.56 22.51 0.22 -1.74 16 11 N -0.52 -18.73 9.42 -188.10 -1.77 -20.50 16 12 C 0.18 6.97 8.92 85.15 0.76 7.73 16 13 C -0.23 -9.93 5.16 -19.88 -0.10 -10.03 16 14 C 0.52 26.56 5.95 86.70 0.52 27.08 16 15 O -0.57 -33.52 13.30 -4.09 -0.05 -33.58 16 16 N -0.42 -20.72 2.81 -616.67 -1.73 -22.45 16 17 C -0.36 -19.17 7.99 84.11 0.67 -18.50 16 18 H 0.09 4.45 7.10 -2.91 -0.02 4.43 16 19 C 0.03 1.77 4.29 84.96 0.36 2.13 16 20 N -0.86 -50.71 11.98 21.68 0.26 -50.45 16 21 Si 0.97 44.18 29.61 68.60 2.03 46.21 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 C 0.04 1.36 4.45 44.99 0.20 1.56 16 26 C -0.16 -5.15 9.81 30.62 0.30 -4.85 16 27 C -0.18 -6.31 9.49 30.62 0.29 -6.02 16 28 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 30 H 0.07 2.76 6.68 -2.39 -0.02 2.74 16 31 H 0.13 3.19 7.50 -2.91 -0.02 3.17 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.13 3.19 7.50 -2.91 -0.02 3.17 16 36 H 0.18 6.70 5.93 -2.91 -0.02 6.68 16 37 H 0.26 14.99 8.32 -92.70 -0.77 14.22 16 38 H 0.11 4.08 6.27 -2.39 -0.01 4.06 16 39 H 0.09 3.32 6.62 -2.39 -0.02 3.31 16 40 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.12 3.25 8.14 -2.38 -0.02 3.24 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -70.98 353.43 4.11 -66.86 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.05 Total: 26.92 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.98 Total: 7.51 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.89 Total: -113.93 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.05 Total: -33.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.98 4.11 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268790411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.046 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds