Wall clock time and date at job start Tue Mar 31 2020 14:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99977 * 2 1 4 4 H 1.48505 * 109.46759 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47369 * 300.00272 * 3 2 1 6 6 H 1.48504 * 109.46978 * 60.00689 * 3 2 1 7 7 C 1.37877 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47377 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00028 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99846 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99987 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47170 * 179.97438 * 15 14 12 17 17 N 1.46507 * 109.47167 * 179.97438 * 16 15 14 18 18 C 1.34779 * 119.99775 * 180.02562 * 17 16 15 19 19 O 1.21568 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.47687 * 119.99770 * 179.97438 * 18 17 16 21 21 C 1.39666 * 120.16823 * 0.02562 * 20 18 17 22 22 C 1.37855 * 119.87959 * 179.97438 * 21 20 18 23 23 C 1.38456 * 120.21923 * 0.02562 * 22 21 20 24 24 C 1.38204 * 120.34081 * 359.97438 * 23 22 21 25 25 C 1.38322 * 120.11403 * 359.95424 * 24 23 22 26 26 F 1.35107 * 120.10830 * 180.02562 * 25 24 23 27 27 H 0.96995 * 119.99696 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47241 * 60.00182 * 9 7 2 29 29 H 1.09002 * 109.47199 * 300.00431 * 9 7 2 30 30 H 1.09003 * 109.46868 * 60.00046 * 10 9 7 31 31 H 1.09002 * 109.47077 * 300.00223 * 10 9 7 32 32 H 0.96998 * 119.99770 * 0.02562 * 11 10 9 33 33 H 0.96998 * 119.99815 * 359.97438 * 14 12 11 34 34 H 1.09001 * 109.47449 * 59.99965 * 15 14 12 35 35 H 1.08997 * 109.47130 * 300.00241 * 15 14 12 36 36 H 1.08997 * 109.46949 * 60.00282 * 16 15 14 37 37 H 1.08997 * 109.47548 * 300.00300 * 16 15 14 38 38 H 0.96992 * 119.99692 * 359.97438 * 17 16 15 39 39 H 1.08005 * 120.05644 * 0.25078 * 21 20 18 40 40 H 1.07999 * 119.89055 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.82909 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.94497 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5127 -4.9309 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.4024 -6.0981 -0.0007 14 7 1.5126 -7.2653 -0.0003 15 6 2.2451 -8.5340 -0.0013 16 6 1.2508 -9.6969 -0.0004 17 7 1.9833 -10.9657 -0.0020 18 6 1.3094 -12.1328 -0.0021 19 8 0.0937 -12.1327 -0.0003 20 6 2.0478 -13.4119 -0.0043 21 6 3.4444 -13.4160 -0.0058 22 6 4.1276 -14.6133 -0.0073 23 6 3.4339 -15.8115 -0.0079 24 6 2.0519 -15.8181 -0.0064 25 6 1.3522 -14.6248 -0.0034 26 9 0.0012 -14.6313 -0.0015 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 0.5427 -4.9308 0.0000 33 1 0.5427 -7.2652 0.0004 34 1 2.8724 -8.5921 0.8882 35 1 2.8711 -8.5914 -0.8917 36 1 0.6233 -9.6390 -0.8897 37 1 0.6251 -9.6393 0.8902 38 1 2.9533 -10.9656 -0.0038 39 1 3.9881 -12.4828 -0.0012 40 1 5.2076 -14.6167 -0.0089 41 1 3.9755 -16.7459 -0.0095 42 1 1.5172 -16.7564 -0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273534549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:56 Heat of formation + Delta-G solvation = -119.912274 kcal Electronic energy + Delta-G solvation = -24978.030346 eV Core-core repulsion = 20871.142661 eV Total energy + Delta-G solvation = -4106.887685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94752 -41.26998 -40.90966 -39.30931 -37.28352 -36.43743 -35.15604 -34.75765 -32.69787 -31.57599 -31.48026 -29.59915 -26.68907 -25.26035 -24.05102 -23.26893 -22.87203 -22.15539 -21.61646 -19.70129 -19.14138 -18.42642 -18.18909 -17.55265 -17.20129 -17.17769 -16.80234 -16.52138 -16.41952 -16.29417 -16.03824 -15.46337 -15.41145 -15.23011 -15.08245 -14.69217 -14.47067 -14.25678 -14.14885 -13.32651 -13.19148 -13.03707 -13.02141 -12.89855 -12.87155 -12.49704 -12.31591 -12.22068 -11.67826 -11.50559 -11.27124 -11.13962 -10.60152 -10.44839 -10.35387 -10.10489 -9.78603 -9.73888 -8.22970 -6.33070 -0.35845 0.15603 1.42282 1.42377 1.47367 1.56884 1.70421 2.15263 2.18314 2.43283 2.66482 3.12185 3.16844 3.37809 3.53858 3.59562 3.74385 3.98108 4.00822 4.26606 4.29070 4.36308 4.48928 4.54494 4.70554 4.81051 4.82324 4.88949 4.96781 5.01324 5.15714 5.21323 5.32220 5.35548 5.43063 5.52735 5.61249 5.79793 5.80081 6.01001 6.18398 6.32574 6.80721 7.01800 7.09799 7.36418 7.57390 8.89112 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.041377 B = 0.001516 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.537304 B =18461.192240 C =19106.678296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.021 3.979 10 C 0.161 3.839 11 N -0.734 5.734 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.733 5.733 15 C 0.136 3.864 16 C 0.119 3.881 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.573 6.573 20 C -0.196 4.196 21 C -0.054 4.054 22 C -0.131 4.131 23 C -0.054 4.054 24 C -0.168 4.168 25 C 0.120 3.880 26 F -0.143 7.143 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.407 0.593 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.418 0.582 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.173 0.827 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 -35.144 -0.020 36.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.401 3.599 13 O -0.518 6.518 14 N -0.391 5.391 15 C 0.011 3.989 16 C -0.006 4.006 17 N -0.360 5.360 18 C 0.343 3.657 19 O -0.453 6.453 20 C -0.200 4.200 21 C -0.073 4.073 22 C -0.149 4.149 23 C -0.072 4.072 24 C -0.186 4.186 25 C 0.100 3.900 26 F -0.121 7.121 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.257 0.743 39 H 0.180 0.820 40 H 0.189 0.811 41 H 0.191 0.809 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.043 -34.989 -0.018 35.902 hybrid contribution -0.968 1.158 0.001 1.509 sum 7.075 -33.831 -0.017 34.563 Atomic orbital electron populations 1.70069 1.07558 1.27881 1.51172 1.25873 0.95781 1.03107 0.94463 0.85387 0.79028 0.78756 0.77810 1.18845 1.20312 1.20326 1.21506 0.93663 0.91870 1.51298 0.92166 1.19155 0.94320 0.91770 0.96390 1.21079 0.94564 0.80971 0.99752 1.45227 1.10480 1.04475 1.78635 1.16042 0.85093 0.81090 0.77710 1.90866 1.13501 1.87278 1.60128 1.44683 1.10476 1.03539 1.80370 1.21181 0.93927 0.80414 1.03354 1.21320 0.94353 0.81398 1.03497 1.45473 1.11302 1.04356 1.74842 1.18396 0.86784 0.84526 0.75983 1.90836 1.15226 1.88069 1.51198 1.20030 0.95872 0.91307 1.12800 1.21604 0.90226 1.01369 0.94064 1.21672 1.02601 0.91068 0.99538 1.21737 0.92200 1.00716 0.92509 1.21482 0.96300 0.96487 1.04371 1.18274 0.76778 0.94793 1.00185 1.91534 1.29927 1.97395 1.93251 0.92613 0.97289 0.97302 0.93665 0.93657 0.75746 0.75120 0.90737 0.90729 0.90604 0.90590 0.74341 0.81970 0.81084 0.80947 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.06 5.09 29.85 0.15 1.22 16 10 C 0.16 6.87 5.61 86.38 0.48 7.36 16 11 N -0.73 -25.08 5.56 -478.52 -2.66 -27.74 16 12 C 0.70 23.01 8.57 179.06 1.53 24.54 16 13 O -0.64 -25.97 16.34 -3.98 -0.07 -26.03 16 14 N -0.73 -16.18 5.56 -478.56 -2.66 -18.84 16 15 C 0.14 2.37 5.79 86.38 0.50 2.87 16 16 C 0.12 1.84 5.79 86.38 0.50 2.34 16 17 N -0.71 -10.01 5.51 -466.12 -2.57 -12.57 16 18 C 0.55 11.63 7.77 86.74 0.67 12.30 16 19 O -0.57 -17.46 15.34 -3.93 -0.06 -17.52 16 20 C -0.20 -3.16 5.88 -20.05 -0.12 -3.27 16 21 C -0.05 -0.40 9.54 22.52 0.21 -0.18 16 22 C -0.13 -0.45 10.03 22.23 0.22 -0.23 16 23 C -0.05 -0.22 10.03 22.31 0.22 0.01 16 24 C -0.17 -1.69 10.01 22.28 0.22 -1.47 16 25 C 0.12 2.18 7.29 22.67 0.17 2.34 16 26 F -0.14 -3.63 15.55 44.97 0.70 -2.93 16 27 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 11.81 8.49 -92.71 -0.79 11.02 16 33 H 0.41 6.90 8.49 -92.71 -0.79 6.11 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 3.14 6.51 -92.71 -0.60 2.54 16 39 H 0.16 0.22 6.41 -2.91 -0.02 0.20 16 40 H 0.17 -0.50 8.06 -2.91 -0.02 -0.52 16 41 H 0.17 -0.47 8.06 -2.91 -0.02 -0.49 16 42 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -81.82 369.21 -0.62 -82.45 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -1.09 Total: 13.12 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 5.47 Total: 18.55 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -7.60 Total: -113.18 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.13 Total: -43.55 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.70 Total: -2.93 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.82 -0.62 -82.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273534549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.463 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds