Wall clock time and date at job start Tue Mar 31 2020 14:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00445 * 2 1 4 4 H 1.48503 * 109.47273 * 240.00245 * 3 2 1 5 5 H 1.48501 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47249 * 119.99857 * 3 2 1 7 7 C 1.37878 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99412 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46858 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99884 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00070 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99974 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99745 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46684 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.47216 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00061 * 179.97438 * 17 16 15 19 19 O 1.21568 * 120.00167 * 0.02562 * 18 17 16 20 20 C 1.47733 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.39646 * 120.11740 * 0.27389 * 20 18 17 22 22 C 1.37838 * 119.88070 * 180.23285 * 21 20 18 23 23 C 1.38658 * 120.11710 * 359.49180 * 22 21 20 24 24 F 1.35093 * 119.88405 * 180.27876 * 23 22 21 25 25 C 1.38657 * 120.23712 * 0.25791 * 23 22 21 26 26 C 1.37840 * 120.11828 * 359.97438 * 25 23 22 27 27 H 0.97008 * 119.99858 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47704 * 60.00041 * 9 7 2 29 29 H 1.09004 * 109.47199 * 299.99343 * 9 7 2 30 30 H 1.08997 * 109.47374 * 59.99870 * 10 9 7 31 31 H 1.09003 * 109.47107 * 299.99346 * 10 9 7 32 32 H 0.96996 * 120.00237 * 359.97438 * 11 10 9 33 33 H 0.96996 * 119.99556 * 359.97438 * 14 12 11 34 34 H 1.08994 * 109.47760 * 60.00096 * 15 14 12 35 35 H 1.08994 * 109.46867 * 299.99508 * 15 14 12 36 36 H 1.09001 * 109.47274 * 60.00156 * 16 15 14 37 37 H 1.09000 * 109.47271 * 299.99714 * 16 15 14 38 38 H 0.97006 * 119.99574 * 0.02562 * 17 16 15 39 39 H 1.08004 * 120.06390 * 0.02562 * 21 20 18 40 40 H 1.08002 * 119.94593 * 179.77526 * 22 21 20 41 41 H 1.08003 * 119.94100 * 180.02562 * 25 23 22 42 42 H 1.08004 * 120.05787 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5126 -4.9308 0.0024 12 6 2.1864 -6.0980 0.0031 13 8 3.4023 -6.0980 0.0036 14 7 1.5125 -7.2652 0.0042 15 6 2.2450 -8.5339 0.0054 16 6 1.2507 -9.6968 0.0058 17 7 1.9831 -10.9656 0.0065 18 6 1.3092 -12.1327 0.0075 19 8 0.0935 -12.1327 0.0073 20 6 2.0478 -13.4122 0.0087 21 6 3.4443 -13.4151 0.0146 22 6 4.1285 -14.6116 0.0108 23 6 3.4327 -15.8110 0.0119 24 9 4.1081 -16.9809 0.0139 25 6 2.0462 -15.8138 0.0113 26 6 1.3521 -14.6229 0.0102 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8711 -3.6040 0.8922 31 1 2.8724 -3.6048 -0.8878 32 1 0.5426 -4.9308 0.0024 33 1 0.5425 -7.2651 0.0049 34 1 2.8716 -8.5909 0.8954 35 1 2.8716 -8.5925 -0.8845 36 1 0.6244 -9.6397 -0.8845 37 1 0.6237 -9.6384 0.8955 38 1 2.9532 -10.9656 0.0069 39 1 3.9873 -12.4814 0.0187 40 1 5.2085 -14.6151 0.0117 41 1 1.5090 -16.7508 0.0125 42 1 0.2720 -14.6263 0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273597520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:59 Heat of formation + Delta-G solvation = -120.948691 kcal Electronic energy + Delta-G solvation = -24655.180359 eV Core-core repulsion = 20548.247732 eV Total energy + Delta-G solvation = -4106.932627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.02481 -41.34251 -40.92559 -39.20960 -37.25292 -36.42353 -35.13563 -34.74501 -32.40441 -32.06852 -31.47136 -29.49688 -26.66147 -25.05302 -24.14602 -23.45475 -22.85866 -22.11617 -21.54547 -19.66410 -19.13627 -18.44743 -18.40788 -17.61607 -17.15553 -17.12310 -16.71263 -16.52843 -16.41845 -16.39913 -15.94977 -15.45706 -15.23266 -15.16739 -14.89455 -14.69602 -14.54406 -14.24939 -14.21009 -13.77256 -13.34521 -13.19618 -12.98366 -12.84081 -12.82028 -12.51743 -12.19182 -12.07839 -11.67679 -11.50581 -11.30491 -11.16494 -10.58188 -10.39192 -10.28967 -10.22799 -9.81564 -9.72016 -8.21876 -6.32084 -0.41636 0.16807 1.43333 1.46029 1.50267 1.54980 1.64914 2.16984 2.23033 2.44252 2.65845 3.11179 3.13172 3.41683 3.58511 3.62476 3.72846 3.83619 4.05210 4.15728 4.23331 4.40488 4.50180 4.55454 4.72996 4.85132 4.85677 4.86108 4.90049 5.01100 5.06511 5.18635 5.21358 5.33398 5.45866 5.53577 5.62347 5.71435 5.80883 6.03180 6.19329 6.38499 6.81188 7.06292 7.12097 7.37266 7.59357 8.89663 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.045647 B = 0.001424 C = 0.001383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.259355 B =19651.709493 C =20233.916590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.732 5.732 15 C 0.134 3.866 16 C 0.119 3.881 17 N -0.709 5.709 18 C 0.562 3.438 19 O -0.574 6.574 20 C -0.159 4.159 21 C -0.048 4.048 22 C -0.159 4.159 23 C 0.112 3.888 24 F -0.141 7.141 25 C -0.162 4.162 26 C -0.039 4.039 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.407 0.593 33 H 0.413 0.587 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 -33.210 0.036 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.400 3.600 13 O -0.519 6.519 14 N -0.390 5.390 15 C 0.009 3.991 16 C -0.006 4.006 17 N -0.363 5.363 18 C 0.351 3.649 19 O -0.455 6.455 20 C -0.162 4.162 21 C -0.066 4.066 22 C -0.177 4.177 23 C 0.093 3.907 24 F -0.120 7.120 25 C -0.181 4.181 26 C -0.058 4.058 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.255 0.745 39 H 0.184 0.816 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.834 -33.103 0.035 33.454 hybrid contribution -0.212 0.760 -0.001 0.788 sum 4.622 -32.343 0.035 32.672 Atomic orbital electron populations 1.70052 1.07536 1.27995 1.51004 1.25854 0.95768 1.03041 0.94434 0.85512 0.78300 0.78188 0.79126 1.19350 1.20708 1.19337 1.21453 0.93652 0.91918 1.51559 0.92196 1.19141 0.94295 0.91711 0.96380 1.21074 0.94570 0.81026 0.99708 1.45218 1.10478 1.04460 1.78639 1.16062 0.85089 0.81136 0.77712 1.90869 1.13571 1.87292 1.60144 1.44677 1.10482 1.03505 1.80341 1.21204 0.94080 0.80564 1.03243 1.21325 0.94240 0.81313 1.03685 1.45546 1.11378 1.04609 1.74719 1.18374 0.86746 0.84273 0.75547 1.90795 1.15082 1.88048 1.51541 1.19951 0.94541 0.92909 1.08848 1.21461 0.91927 0.99436 0.93775 1.21392 1.02543 0.90325 1.03448 1.18251 0.90586 0.81672 1.00193 1.91522 1.80415 1.46530 1.93498 1.21311 0.92299 1.00358 1.04094 1.21213 1.01293 0.90220 0.93093 0.92607 0.97291 0.97296 0.93711 0.93707 0.75719 0.75058 0.90878 0.90887 0.90363 0.90355 0.74452 0.81591 0.81762 0.82450 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.90 13.29 21.45 0.28 -53.62 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.16 6.79 5.61 86.38 0.48 7.27 16 11 N -0.73 -24.52 5.56 -478.52 -2.66 -27.18 16 12 C 0.70 22.42 8.57 179.05 1.53 23.95 16 13 O -0.64 -25.65 16.34 -3.99 -0.07 -25.72 16 14 N -0.73 -15.26 5.56 -478.55 -2.66 -17.92 16 15 C 0.13 2.14 5.79 86.38 0.50 2.64 16 16 C 0.12 1.54 5.79 86.38 0.50 2.04 16 17 N -0.71 -8.01 5.51 -466.08 -2.57 -10.57 16 18 C 0.56 9.19 7.77 86.75 0.67 9.86 16 19 O -0.57 -14.02 16.34 -3.93 -0.06 -14.08 16 20 C -0.16 -1.97 5.87 -20.09 -0.12 -2.08 16 21 C -0.05 -0.34 9.54 22.52 0.21 -0.12 16 22 C -0.16 -1.21 10.01 22.28 0.22 -0.98 16 23 C 0.11 1.22 7.31 22.47 0.16 1.38 16 24 F -0.14 -1.83 17.26 44.97 0.78 -1.05 16 25 C -0.16 -1.66 10.01 22.28 0.22 -1.44 16 26 C -0.04 -0.49 9.59 22.52 0.22 -0.27 16 27 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.41 11.46 8.49 -92.71 -0.79 10.67 16 33 H 0.41 6.29 8.49 -92.71 -0.79 5.50 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.42 2.28 6.50 -92.70 -0.60 1.68 16 39 H 0.17 0.15 6.40 -2.91 -0.02 0.13 16 40 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.14 1.85 7.65 -2.91 -0.02 1.83 16 Total: -1.00 -75.82 371.05 -0.56 -76.38 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -1.09 Total: 14.16 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.46 Total: 14.38 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -7.60 Total: -109.29 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.13 Total: -39.80 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.82 -0.56 -76.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273597520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.568 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds