Wall clock time and date at job start Tue Mar 31 2020 13:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48504 * 109.46698 * 269.99455 * 3 2 1 5 5 H 1.48493 * 109.47160 * 29.99553 * 3 2 1 6 6 H 1.48501 * 109.46877 * 149.99912 * 3 2 1 7 7 C 1.37882 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47477 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47053 * 179.97438 * 10 9 7 12 12 N 1.46910 * 109.46875 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99859 * 174.65163 * 12 11 10 14 14 C 1.53002 * 110.45976 * 297.20161 * 13 12 11 15 15 C 1.50701 * 109.46874 * 302.97102 * 14 13 12 16 16 C 1.38245 * 119.98599 * 88.81759 * 15 14 13 17 17 C 1.38213 * 120.01140 * 179.97438 * 16 15 14 18 18 C 1.38353 * 119.98683 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 120.01084 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97347 * 0.28136 * 18 17 16 21 21 C 1.38216 * 119.98689 * 359.44573 * 20 18 17 22 22 C 1.54510 * 110.51129 * 174.59488 * 13 12 11 23 23 C 1.54479 * 104.06275 * 241.21952 * 22 13 12 24 24 O 1.44425 * 104.80522 * 23.97760 * 23 22 13 25 25 C 1.44647 * 105.36921 * 319.56865 * 24 23 22 26 26 H 0.96999 * 119.99667 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47414 * 59.99037 * 9 7 2 28 28 H 1.09009 * 109.46657 * 299.99923 * 9 7 2 29 29 H 1.08997 * 109.47050 * 59.99945 * 10 9 7 30 30 H 1.08997 * 109.46807 * 299.99691 * 10 9 7 31 31 H 1.08997 * 109.47116 * 60.00135 * 11 10 9 32 32 H 1.08997 * 109.47183 * 299.99609 * 11 10 9 33 33 H 1.00898 * 110.99745 * 50.70038 * 12 11 10 34 34 H 1.08998 * 109.46992 * 182.96985 * 14 13 12 35 35 H 1.09004 * 109.47113 * 62.96876 * 14 13 12 36 36 H 1.07999 * 119.99159 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.00089 * 180.02562 * 17 16 15 38 38 H 1.08006 * 120.00602 * 179.71659 * 20 18 17 39 39 H 1.08006 * 119.99116 * 180.27797 * 21 20 18 40 40 H 1.08994 * 110.50899 * 359.86311 * 22 13 12 41 41 H 1.08998 * 110.51085 * 122.43784 * 22 13 12 42 42 H 1.08997 * 110.37284 * 142.80398 * 23 22 13 43 43 H 1.08996 * 110.37577 * 265.14781 * 23 22 13 44 44 H 1.09006 * 110.33645 * 281.59221 * 25 24 23 45 45 H 1.08993 * 110.51036 * 159.18625 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4347 -6.1038 0.0006 13 6 1.7390 -7.3911 0.1290 14 6 1.0017 -7.4695 1.4674 15 6 1.9812 -7.2601 2.5934 16 6 2.2457 -5.9825 3.0505 17 6 3.1436 -5.7900 4.0835 18 6 3.7780 -6.8761 4.6597 19 17 4.9053 -6.6351 5.9577 20 6 3.5176 -8.1539 4.1976 21 6 2.6153 -8.3457 3.1683 22 6 2.7375 -8.5622 -0.0084 23 6 2.2387 -9.3374 -1.2480 24 8 1.4960 -8.3660 -2.0165 25 6 0.7544 -7.5936 -1.0440 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6044 -0.8895 31 1 0.8531 -5.0451 -0.8886 32 1 0.8538 -5.0446 0.8914 33 1 3.1237 -5.9908 0.7290 34 1 0.5357 -8.4496 1.5686 35 1 0.2341 -6.6965 1.5051 36 1 1.7507 -5.1348 2.6003 37 1 3.3498 -4.7919 4.4407 38 1 4.0160 -9.0017 4.6440 39 1 2.4086 -9.3435 2.8104 40 1 3.7469 -8.1859 -0.1740 41 1 2.7077 -9.1955 0.8782 42 1 3.0831 -9.7129 -1.8259 43 1 1.5892 -10.1589 -0.9458 44 1 -0.1239 -8.1468 -0.7110 45 1 0.4612 -6.6314 -1.4638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282967357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:22 Heat of formation + Delta-G solvation = -40.873337 kcal Electronic energy + Delta-G solvation = -25385.291361 eV Core-core repulsion = 21813.707781 eV Total energy + Delta-G solvation = -3571.583581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62170 -39.06343 -36.83030 -36.15938 -34.09339 -32.56698 -31.31919 -31.09400 -30.21124 -28.73161 -26.14271 -25.94712 -23.51766 -22.98702 -22.00444 -21.75775 -20.16802 -19.49504 -17.23377 -16.71860 -16.27765 -16.04742 -15.83645 -15.60956 -15.17451 -14.86704 -14.50938 -14.21649 -14.01992 -13.80478 -13.61746 -13.50655 -12.97416 -12.78322 -12.34520 -12.20840 -12.01649 -11.71228 -11.63890 -11.42292 -11.30827 -11.26846 -11.10617 -10.93915 -10.84304 -10.78942 -10.50594 -10.42932 -9.81331 -9.69344 -9.35570 -9.23725 -9.06867 -8.80754 -8.34854 -8.16638 -6.00209 -4.02132 0.90974 1.08464 1.95606 3.32431 3.38639 3.38718 3.42060 3.90625 4.19444 4.30751 4.46860 4.50242 4.64918 4.67924 4.85028 4.91278 4.96904 5.03057 5.11643 5.28329 5.35953 5.41612 5.42826 5.48181 5.57250 5.60800 5.61195 5.71623 5.82144 5.83813 5.86716 5.97103 6.01295 6.08423 6.28441 6.35295 6.60172 6.63826 6.71590 6.79220 7.09857 7.31050 7.56304 7.66961 7.80886 7.99754 8.43119 9.04881 9.62131 11.11141 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008365 B = 0.003972 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.564789 B = 7048.515407 C = 9846.408790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.049 3.951 12 N -0.669 5.669 13 C 0.091 3.909 14 C -0.111 4.111 15 C -0.074 4.074 16 C -0.105 4.105 17 C -0.101 4.101 18 C -0.038 4.038 19 Cl -0.076 7.076 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.146 4.146 23 C 0.048 3.952 24 O -0.367 6.367 25 C 0.055 3.945 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.341 0.659 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -21.838 7.317 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.079 4.079 12 N -0.300 5.300 13 C -0.001 4.001 14 C -0.151 4.151 15 C -0.074 4.074 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.065 4.065 19 Cl -0.047 7.047 20 C -0.129 4.129 21 C -0.124 4.124 22 C -0.184 4.184 23 C -0.030 4.030 24 O -0.285 6.285 25 C -0.022 4.022 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.261 -21.695 6.505 23.046 hybrid contribution 0.288 1.055 1.422 1.794 sum 4.549 -20.639 7.928 22.573 Atomic orbital electron populations 1.69962 1.06038 1.26553 1.51000 1.25011 0.94824 0.99209 0.95349 0.86620 0.79864 0.83545 0.78145 1.20642 1.21267 1.19889 1.21240 0.93033 0.91030 1.50388 0.92719 1.19050 0.93928 0.91334 0.97078 1.21646 0.99226 0.92942 1.00810 1.22317 0.94746 0.90780 1.00011 1.60804 1.16122 1.00123 1.52956 1.22256 0.93686 0.91532 0.92656 1.21364 0.97300 1.03549 0.92854 1.19881 0.97589 0.93188 0.96729 1.21337 0.97553 0.97413 0.96007 1.21151 0.96165 0.98511 0.96121 1.20945 0.96522 0.95115 0.93876 1.98371 1.60505 1.97270 1.48537 1.20994 0.98954 0.95453 0.97526 1.20977 0.96637 0.98759 0.96037 1.23101 1.00614 0.96137 0.98523 1.23335 0.95619 0.91670 0.92338 1.89192 1.61829 1.47865 1.29598 1.23625 0.92940 0.97078 0.88590 0.93049 0.96575 0.96868 0.93706 0.92443 0.91073 0.95252 0.83904 0.90248 0.89702 0.84281 0.84598 0.85150 0.85288 0.89672 0.90463 0.89322 0.92769 0.92217 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.15 5.36 -26.73 -0.14 -2.29 16 11 C 0.05 0.78 4.45 -3.82 -0.02 0.77 16 12 N -0.67 -9.14 5.89 -98.37 -0.58 -9.72 16 13 C 0.09 1.01 0.64 -130.03 -0.08 0.92 16 14 C -0.11 -1.09 3.88 -27.88 -0.11 -1.20 16 15 C -0.07 -0.75 4.28 -104.62 -0.45 -1.20 16 16 C -0.10 -1.23 8.01 -39.59 -0.32 -1.55 16 17 C -0.10 -1.17 9.83 -39.55 -0.39 -1.55 16 18 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 19 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 20 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 21 C -0.11 -0.94 8.53 -39.59 -0.34 -1.27 16 22 C -0.15 -1.40 6.09 -25.16 -0.15 -1.55 16 23 C 0.05 0.46 7.64 37.93 0.29 0.75 16 24 O -0.37 -4.90 11.65 -35.23 -0.41 -5.31 16 25 C 0.05 0.65 6.71 37.93 0.25 0.91 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.18 6.19 -51.93 -0.32 0.86 16 32 H 0.03 0.45 4.75 -51.93 -0.25 0.20 16 33 H 0.34 4.64 6.71 -39.29 -0.26 4.38 16 34 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 36 H 0.14 1.81 6.04 -52.49 -0.32 1.49 16 37 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.13 0.86 7.04 -52.48 -0.37 0.49 16 40 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 41 H 0.08 0.59 5.46 -51.93 -0.28 0.31 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.59 7.87 -51.93 -0.41 0.19 16 45 H 0.10 1.38 5.81 -51.93 -0.30 1.08 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -30.34 365.23 -10.52 -40.86 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.61 Total: 2.52 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.64 Total: -22.21 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.16 Total: -35.71 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.41 Total: -5.31 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.34 -10.52 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282967357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.010 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds