Wall clock time and date at job start Tue Mar 31 2020 13:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47464 * 270.00484 * 3 2 1 5 5 H 1.48510 * 109.46921 * 30.00313 * 3 2 1 6 6 H 1.48497 * 109.47065 * 149.99832 * 3 2 1 7 7 C 1.37871 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00105 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47070 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00207 * 185.51329 * 12 11 10 14 14 C 1.53002 * 110.44013 * 186.38251 * 13 12 11 15 15 C 1.50696 * 109.47005 * 305.32122 * 14 13 12 16 16 C 1.38244 * 119.98873 * 267.62833 * 15 14 13 17 17 C 1.38218 * 120.01252 * 179.72893 * 16 15 14 18 18 C 1.38353 * 119.98609 * 0.54440 * 17 16 15 19 19 Cl 1.73605 * 120.01294 * 179.70631 * 18 17 16 20 20 C 1.38351 * 119.97538 * 359.72922 * 18 17 16 21 21 C 1.38216 * 119.98542 * 359.97438 * 20 18 17 22 22 C 1.54809 * 110.48985 * 309.07307 * 13 12 11 23 23 C 1.54998 * 102.09209 * 97.79336 * 22 13 12 24 24 O 1.44377 * 103.49288 * 37.02290 * 23 22 13 25 25 C 1.43743 * 106.97598 * 319.94491 * 24 23 22 26 26 H 0.97007 * 119.99641 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47125 * 59.99911 * 9 7 2 28 28 H 1.08994 * 109.47028 * 299.99588 * 9 7 2 29 29 H 1.09002 * 109.47251 * 59.99879 * 10 9 7 30 30 H 1.09003 * 109.47505 * 299.99975 * 10 9 7 31 31 H 1.08996 * 109.47619 * 300.00119 * 11 10 9 32 32 H 1.09001 * 109.47095 * 60.00427 * 11 10 9 33 33 H 1.00900 * 111.00238 * 309.46811 * 12 11 10 34 34 H 1.09001 * 109.46820 * 65.32069 * 14 13 12 35 35 H 1.08996 * 109.47088 * 185.31922 * 14 13 12 36 36 H 1.07996 * 119.99307 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.00477 * 180.26728 * 17 16 15 38 38 H 1.07998 * 120.00858 * 179.97438 * 20 18 17 39 39 H 1.08003 * 119.99051 * 179.97438 * 21 20 18 40 40 H 1.08997 * 110.90973 * 215.99065 * 22 13 12 41 41 H 1.09001 * 110.90503 * 339.59799 * 22 13 12 42 42 H 1.09004 * 110.61864 * 278.52798 * 23 22 13 43 43 H 1.09000 * 110.75228 * 155.59434 * 23 22 13 44 44 H 1.09003 * 109.87499 * 267.08629 * 25 24 23 45 45 H 1.08997 * 109.88373 * 145.93655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0411 -4.0215 -0.0015 13 6 7.5037 -4.0628 0.1291 14 6 8.0141 -5.4964 -0.0299 15 6 7.3043 -6.3940 0.9507 16 6 7.8567 -6.6310 2.1955 17 6 7.2034 -7.4497 3.0974 18 6 6.0018 -8.0410 2.7499 19 17 5.1843 -9.0755 3.8792 20 6 5.4522 -7.8079 1.5018 21 6 6.1034 -6.9842 0.6031 22 6 8.1673 -3.1297 -0.9127 23 6 8.4364 -1.8512 -0.0787 24 8 8.8055 -2.3667 1.2184 25 6 7.9404 -3.4825 1.4883 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6577 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9141 -2.1231 -0.8926 32 1 5.9155 -2.1225 0.8873 33 1 5.5977 -4.5615 0.7265 34 1 7.8186 -5.8411 -1.0453 35 1 9.0865 -5.5237 0.1630 36 1 8.7971 -6.1733 2.4649 37 1 7.6329 -7.6313 4.0714 38 1 4.5144 -8.2695 1.2298 39 1 5.6746 -6.8025 -0.3714 40 1 9.0999 -3.5578 -1.2802 41 1 7.4857 -2.9200 -1.7370 42 1 7.5349 -1.2426 -0.0074 43 1 9.2547 -1.2742 -0.5095 44 1 7.0661 -3.1472 2.0462 45 1 8.4786 -4.2394 2.0588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282967375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:25 Heat of formation + Delta-G solvation = -38.758073 kcal Electronic energy + Delta-G solvation = -25301.317173 eV Core-core repulsion = 21729.825317 eV Total energy + Delta-G solvation = -3571.491856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75145 -39.26434 -36.76721 -35.99962 -34.29673 -32.71351 -31.41313 -31.31238 -30.33129 -28.92391 -26.26606 -26.16009 -23.28425 -22.87919 -22.39379 -21.52692 -20.27555 -19.55989 -17.26804 -16.98333 -16.66160 -16.19207 -15.73491 -15.59543 -15.39507 -14.95542 -14.29042 -14.25246 -14.04892 -13.80601 -13.56544 -13.38478 -13.03135 -12.87109 -12.65259 -12.31878 -12.10921 -12.02980 -11.76175 -11.56069 -11.44447 -11.41280 -11.18635 -11.03499 -10.99121 -10.79430 -10.73698 -9.97790 -9.79056 -9.72062 -9.59815 -9.26984 -9.18716 -8.81356 -8.54258 -8.33010 -6.04473 -4.02446 0.87041 1.04763 1.92259 3.29751 3.34466 3.37419 3.40734 3.76760 4.20638 4.22127 4.44688 4.49309 4.57168 4.64076 4.69843 4.79343 4.97249 5.07518 5.08621 5.15449 5.29363 5.40200 5.41766 5.47640 5.54039 5.56679 5.65149 5.65826 5.72743 5.73308 5.81590 5.90897 5.97999 6.02218 6.14458 6.30508 6.46174 6.51880 6.56190 6.69391 6.87140 7.12517 7.29717 7.38734 7.45672 7.79331 8.54106 9.00793 9.58097 11.09073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003445 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.059254 B = 8126.504855 C =10064.361807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.048 3.952 12 N -0.671 5.671 13 C 0.090 3.910 14 C -0.061 4.061 15 C -0.079 4.079 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.038 4.038 19 Cl -0.075 7.075 20 C -0.108 4.108 21 C -0.091 4.091 22 C -0.145 4.145 23 C 0.036 3.964 24 O -0.377 6.377 25 C 0.016 3.984 26 H 0.263 0.737 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.344 0.656 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.150 -15.484 2.138 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.138 4.138 11 C -0.080 4.080 12 N -0.303 5.303 13 C -0.002 4.002 14 C -0.099 4.099 15 C -0.079 4.079 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.064 4.064 19 Cl -0.046 7.046 20 C -0.126 4.126 21 C -0.109 4.109 22 C -0.183 4.183 23 C -0.040 4.040 24 O -0.296 6.296 25 C -0.063 4.063 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.164 0.836 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.085 -15.426 1.696 25.382 hybrid contribution 0.065 1.009 1.050 1.458 sum 20.149 -14.417 2.746 24.928 Atomic orbital electron populations 1.69919 1.06298 1.26844 1.51234 1.25033 0.94724 0.99149 0.94607 0.86783 0.80353 0.83688 0.78477 1.20284 1.21400 1.19091 1.21133 0.89476 0.94452 1.50668 0.91043 1.19523 0.97209 0.92133 0.96069 1.21466 0.90949 0.99875 1.01535 1.22378 0.97561 0.88000 1.00110 1.60743 1.02400 1.13880 1.53293 1.22224 0.89860 0.94665 0.93476 1.20634 0.98824 0.91518 0.98931 1.19975 0.95496 0.97420 0.95031 1.21059 1.00226 0.98315 0.93181 1.21013 0.93980 0.97585 1.00384 1.20965 0.95333 0.98001 0.92104 1.98375 1.78869 1.66193 1.61212 1.21143 1.00548 0.98947 0.91985 1.21174 0.94242 0.95315 1.00183 1.23220 1.01255 0.95179 0.98618 1.23791 1.01178 0.96064 0.82993 1.88846 1.57626 1.47012 1.36104 1.24128 0.94891 0.89189 0.98096 0.92761 0.96912 0.97077 0.91886 0.93114 0.90993 0.95302 0.83623 0.89407 0.90210 0.85274 0.85132 0.84792 0.84147 0.90068 0.88699 0.91307 0.89038 0.92212 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -1.92 5.36 -26.73 -0.14 -2.07 16 11 C 0.05 0.73 3.89 -3.83 -0.01 0.71 16 12 N -0.67 -8.31 5.81 -98.42 -0.57 -8.88 16 13 C 0.09 0.93 0.80 -130.07 -0.10 0.83 16 14 C -0.06 -0.51 4.41 -27.88 -0.12 -0.63 16 15 C -0.08 -0.70 4.26 -104.62 -0.45 -1.14 16 16 C -0.11 -0.93 8.59 -39.59 -0.34 -1.27 16 17 C -0.11 -0.99 9.83 -39.55 -0.39 -1.38 16 18 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 19 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 20 C -0.11 -1.04 9.83 -39.55 -0.39 -1.42 16 21 C -0.09 -0.84 8.19 -39.59 -0.32 -1.17 16 22 C -0.14 -1.44 5.73 -24.72 -0.14 -1.58 16 23 C 0.04 0.41 7.17 38.21 0.27 0.68 16 24 O -0.38 -4.96 11.52 -35.23 -0.41 -5.37 16 25 C 0.02 0.18 6.23 37.73 0.24 0.42 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 28 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.07 5.95 -51.93 -0.31 0.76 16 32 H 0.03 0.46 5.71 -51.93 -0.30 0.16 16 33 H 0.34 4.34 6.71 -39.29 -0.26 4.07 16 34 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.13 0.89 7.14 -52.49 -0.37 0.52 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 41 H 0.09 0.99 6.96 -51.93 -0.36 0.63 16 42 H 0.07 0.86 5.93 -51.93 -0.31 0.56 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.79 6.66 -51.93 -0.35 0.45 16 45 H 0.08 0.85 5.54 -51.93 -0.29 0.56 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -31.01 362.56 -10.29 -41.30 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.69 Total: 2.23 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.70 Total: -22.37 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.20 Total: -36.14 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.41 Total: -5.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.01 -10.29 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282967375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.543 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds