Wall clock time and date at job start Tue Mar 31 2020 13:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47464 * 270.00484 * 3 2 1 5 5 H 1.48510 * 109.46921 * 30.00313 * 3 2 1 6 6 H 1.48497 * 109.47065 * 149.99832 * 3 2 1 7 7 C 1.37871 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00105 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47070 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00207 * 185.51329 * 12 11 10 14 14 C 1.53002 * 110.44013 * 186.38251 * 13 12 11 15 15 C 1.50696 * 109.47005 * 305.32122 * 14 13 12 16 16 C 1.38244 * 119.98873 * 267.62833 * 15 14 13 17 17 C 1.38218 * 120.01252 * 179.72893 * 16 15 14 18 18 C 1.38353 * 119.98609 * 0.54440 * 17 16 15 19 19 Cl 1.73605 * 120.01294 * 179.70631 * 18 17 16 20 20 C 1.38351 * 119.97538 * 359.72922 * 18 17 16 21 21 C 1.38216 * 119.98542 * 359.97438 * 20 18 17 22 22 C 1.54809 * 110.48985 * 309.07307 * 13 12 11 23 23 C 1.54998 * 102.09209 * 97.79336 * 22 13 12 24 24 O 1.44377 * 103.49288 * 37.02290 * 23 22 13 25 25 C 1.43743 * 106.97598 * 319.94491 * 24 23 22 26 26 H 0.97007 * 119.99641 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47125 * 59.99911 * 9 7 2 28 28 H 1.08994 * 109.47028 * 299.99588 * 9 7 2 29 29 H 1.09002 * 109.47251 * 59.99879 * 10 9 7 30 30 H 1.09003 * 109.47505 * 299.99975 * 10 9 7 31 31 H 1.08996 * 109.47619 * 300.00119 * 11 10 9 32 32 H 1.09001 * 109.47095 * 60.00427 * 11 10 9 33 33 H 1.00900 * 111.00238 * 309.46811 * 12 11 10 34 34 H 1.09001 * 109.46820 * 65.32069 * 14 13 12 35 35 H 1.08996 * 109.47088 * 185.31922 * 14 13 12 36 36 H 1.07996 * 119.99307 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.00477 * 180.26728 * 17 16 15 38 38 H 1.07998 * 120.00858 * 179.97438 * 20 18 17 39 39 H 1.08003 * 119.99051 * 179.97438 * 21 20 18 40 40 H 1.08997 * 110.90973 * 215.99065 * 22 13 12 41 41 H 1.09001 * 110.90503 * 339.59799 * 22 13 12 42 42 H 1.09004 * 110.61864 * 278.52798 * 23 22 13 43 43 H 1.09000 * 110.75228 * 155.59434 * 23 22 13 44 44 H 1.09003 * 109.87499 * 267.08629 * 25 24 23 45 45 H 1.08997 * 109.88373 * 145.93655 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0214 -2.6365 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0411 -4.0215 -0.0015 13 6 7.5037 -4.0628 0.1291 14 6 8.0141 -5.4964 -0.0299 15 6 7.3043 -6.3940 0.9507 16 6 7.8567 -6.6310 2.1955 17 6 7.2034 -7.4497 3.0974 18 6 6.0018 -8.0410 2.7499 19 17 5.1843 -9.0755 3.8792 20 6 5.4522 -7.8079 1.5018 21 6 6.1034 -6.9842 0.6031 22 6 8.1673 -3.1297 -0.9127 23 6 8.4364 -1.8512 -0.0787 24 8 8.8055 -2.3667 1.2184 25 6 7.9404 -3.4825 1.4883 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6577 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9141 -2.1231 -0.8926 32 1 5.9155 -2.1225 0.8873 33 1 5.5977 -4.5615 0.7265 34 1 7.8186 -5.8411 -1.0453 35 1 9.0865 -5.5237 0.1630 36 1 8.7971 -6.1733 2.4649 37 1 7.6329 -7.6313 4.0714 38 1 4.5144 -8.2695 1.2298 39 1 5.6746 -6.8025 -0.3714 40 1 9.0999 -3.5578 -1.2802 41 1 7.4857 -2.9200 -1.7370 42 1 7.5349 -1.2426 -0.0074 43 1 9.2547 -1.2742 -0.5095 44 1 7.0661 -3.1472 2.0462 45 1 8.4786 -4.2394 2.0588 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282967375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:24 Heat of formation + Delta-G solvation = -57.198057 kcal Electronic energy + Delta-G solvation = -25302.116791 eV Core-core repulsion = 21729.825317 eV Total energy + Delta-G solvation = -3572.291474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59065 -40.00894 -37.53671 -37.16167 -35.72180 -34.34209 -32.69667 -32.01085 -31.40294 -29.94179 -27.80380 -27.01992 -24.32241 -23.73373 -23.61994 -22.32242 -21.90742 -20.45462 -18.93799 -17.98636 -17.77001 -17.10704 -16.69120 -16.37594 -16.34242 -16.22062 -15.89706 -15.46626 -14.96501 -14.72627 -14.54794 -14.38491 -14.22683 -14.07247 -13.80278 -13.57190 -13.33068 -13.03556 -12.86347 -12.65731 -12.53083 -12.41619 -12.28459 -12.18162 -11.93941 -11.80578 -11.72066 -11.60542 -11.49717 -11.43093 -11.26114 -10.77206 -10.64556 -9.96020 -9.58413 -9.31566 -8.30168 -6.34397 0.16270 0.36115 1.18846 1.34527 1.36833 1.48503 2.35256 2.63830 2.88988 3.05231 3.26241 3.42703 3.78710 3.82588 3.90276 3.98372 4.03802 4.16420 4.18678 4.28349 4.33121 4.39484 4.41730 4.58796 4.69229 4.72087 4.76101 4.78021 4.85073 4.89121 4.92963 4.99155 5.04491 5.06423 5.10819 5.22994 5.29127 5.32495 5.48783 5.58508 5.62298 5.65575 5.77347 5.88293 6.10240 6.28530 6.38164 6.73952 7.30347 8.86842 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003445 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.059254 B = 8126.504855 C =10064.361807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.533 4.533 8 H 0.030 0.970 9 C -0.008 4.008 10 C -0.091 4.091 11 C 0.064 3.936 12 N -0.667 5.667 13 C 0.092 3.908 14 C -0.054 4.054 15 C -0.081 4.081 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.051 4.051 19 Cl -0.082 7.082 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.140 4.140 23 C 0.030 3.970 24 O -0.394 6.394 25 C 0.015 3.985 26 H 0.266 0.734 27 H 0.014 0.986 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.342 0.658 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.110 0.890 44 H 0.038 0.962 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.317 -15.002 1.658 27.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.048 0.952 9 C -0.046 4.046 10 C -0.129 4.129 11 C -0.064 4.064 12 N -0.299 5.299 13 C 0.000 4.000 14 C -0.092 4.092 15 C -0.081 4.081 16 C -0.127 4.127 17 C -0.135 4.135 18 C -0.077 4.077 19 Cl -0.053 7.053 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.178 4.178 23 C -0.046 4.046 24 O -0.313 6.313 25 C -0.063 4.063 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.128 0.872 44 H 0.056 0.944 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.268 -14.966 1.212 27.692 hybrid contribution -0.985 0.778 1.218 1.749 sum 22.283 -14.188 2.430 26.528 Atomic orbital electron populations 1.70078 1.08352 1.28150 1.52733 1.26043 0.95622 1.03596 0.94110 0.85638 0.79395 0.78140 0.79351 1.18797 1.21061 1.17173 1.21506 0.92254 0.93028 1.50303 0.95193 1.19462 0.93786 0.95055 0.96313 1.21279 0.94023 0.96919 1.00697 1.22075 0.94308 0.89809 1.00254 1.60717 1.04015 1.11883 1.53284 1.22310 0.88185 0.96266 0.93201 1.20630 0.99747 0.89600 0.99194 1.20085 0.95269 0.97356 0.95391 1.21297 1.00780 0.97824 0.92764 1.21238 0.93656 0.97413 1.01170 1.21126 0.95933 0.98493 0.92198 1.98369 1.79083 1.66440 1.61391 1.21260 1.00911 0.99411 0.92251 1.21256 0.94617 0.95420 1.00209 1.23240 1.02216 0.94343 0.97956 1.23906 1.01256 0.96723 0.82729 1.88833 1.57845 1.47553 1.37097 1.24166 0.94280 0.89257 0.98638 0.92513 0.96798 0.96041 0.92645 0.94128 0.90162 0.95878 0.83785 0.88642 0.88162 0.83288 0.83872 0.84643 0.84003 0.87666 0.89038 0.92995 0.87167 0.94404 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.44 0.30 -60.25 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -31.20 9.66 25.60 0.25 -30.95 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.09 -3.49 5.36 30.59 0.16 -3.33 16 11 C 0.06 1.88 3.89 86.30 0.34 2.21 16 12 N -0.67 -15.46 5.81 -465.29 -2.70 -18.16 16 13 C 0.09 1.67 0.80 4.52 0.00 1.67 16 14 C -0.05 -0.72 4.41 29.85 0.13 -0.59 16 15 C -0.08 -1.24 4.26 -19.86 -0.08 -1.33 16 16 C -0.11 -1.57 8.59 22.27 0.19 -1.38 16 17 C -0.12 -1.91 9.83 22.29 0.22 -1.69 16 18 C -0.05 -0.98 6.32 22.32 0.14 -0.84 16 19 Cl -0.08 -1.59 28.96 -2.72 -0.08 -1.67 16 20 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 21 C -0.10 -1.69 8.19 22.27 0.18 -1.51 16 22 C -0.14 -2.33 5.73 31.90 0.18 -2.15 16 23 C 0.03 0.60 7.17 72.67 0.52 1.12 16 24 O -0.39 -9.45 11.52 -148.98 -1.72 -11.16 16 25 C 0.02 0.32 6.23 72.36 0.45 0.77 16 26 H 0.27 15.74 8.31 -92.70 -0.77 14.96 16 27 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 28 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.23 5.95 -2.39 -0.01 2.22 16 32 H 0.02 0.71 5.71 -2.39 -0.01 0.70 16 33 H 0.34 8.28 6.71 -89.69 -0.60 7.68 16 34 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 36 H 0.15 1.53 7.14 -2.91 -0.02 1.51 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.10 1.28 7.88 -2.39 -0.02 1.26 16 41 H 0.09 1.63 6.96 -2.39 -0.02 1.62 16 42 H 0.05 1.21 5.93 -2.39 -0.01 1.19 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 0.96 6.66 -2.39 -0.02 0.94 16 45 H 0.10 1.74 5.54 -2.39 -0.01 1.73 16 Total: -1.00 -68.00 362.56 1.51 -66.49 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.34 Total: 17.95 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.49 Total: -39.66 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.40 Total: -78.41 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.72 Total: -11.16 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -68.00 1.51 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282967375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.291 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds