Wall clock time and date at job start Tue Mar 31 2020 15:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36611 * 120.92352 * 2 1 4 4 C 1.39274 * 119.90540 * 180.02562 * 3 2 1 5 5 N 1.31146 * 121.77197 * 0.02562 * 4 3 2 6 6 C 1.33620 * 121.39361 * 359.97438 * 5 4 3 7 7 C 1.40769 * 120.83631 * 180.02562 * 6 5 4 8 8 C 1.35690 * 120.10814 * 180.02562 * 7 6 5 9 9 C 1.40633 * 120.93030 * 0.02562 * 8 7 6 10 10 C 1.47772 * 119.80394 * 179.97438 * 9 8 7 11 11 O 1.21559 * 119.99917 * 128.95115 * 10 9 8 12 12 N 1.34773 * 119.99670 * 308.95572 * 10 9 8 13 13 C 1.46502 * 120.00331 * 3.50045 * 12 10 9 14 14 C 1.50700 * 109.46902 * 93.77265 * 13 12 10 15 15 H 1.07995 * 120.00141 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00058 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47248 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47079 * 120.00227 * 18 16 14 21 21 H 1.48501 * 109.47384 * 239.99943 * 18 16 14 22 22 C 1.46506 * 119.99914 * 183.50274 * 12 10 9 23 23 C 1.53005 * 109.47032 * 84.87698 * 22 12 10 24 24 C 1.47199 * 109.47206 * 180.02562 * 23 22 12 25 25 N 9.82979 * 73.43575 * 191.67686 * 2 1 3 26 26 C 1.38546 * 120.39439 * 359.93755 * 9 8 7 27 27 C 1.40186 * 119.40266 * 0.08461 * 26 9 8 28 28 H 1.09001 * 109.46940 * 89.99863 * 1 2 3 29 29 H 1.09001 * 109.47447 * 209.99973 * 1 2 3 30 30 H 1.09003 * 109.46618 * 329.99983 * 1 2 3 31 31 H 1.07998 * 120.04967 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.11697 * 179.71799 * 4 3 2 33 33 H 1.07994 * 119.93951 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.53410 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.46932 * 213.77345 * 13 12 10 36 36 H 1.09000 * 109.47001 * 333.77477 * 13 12 10 37 37 H 0.97000 * 119.99897 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47215 * 204.87889 * 22 12 10 39 39 H 1.09001 * 109.47085 * 324.87826 * 22 12 10 40 40 H 1.09003 * 109.46992 * 300.00576 * 23 22 12 41 41 H 1.09001 * 109.47081 * 60.00125 * 23 22 12 42 42 H 1.08002 * 120.29930 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1719 0.0000 4 6 3.6016 1.1472 -0.0005 5 7 4.2722 0.0201 -0.0016 6 6 3.6479 -1.1613 -0.0016 7 6 4.3795 -2.3639 -0.0022 8 6 3.7303 -3.5555 -0.0027 9 6 2.3252 -3.6131 -0.0033 10 6 1.6439 -4.9244 -0.0045 11 8 0.7761 -5.1592 0.8137 12 7 1.9848 -5.8600 -0.9127 13 6 3.0826 -5.6064 -1.8491 14 6 4.3632 -6.1657 -1.2850 15 1 4.3597 -6.6609 -0.3253 16 6 5.5394 -6.0451 -1.9942 17 7 5.5437 -5.4425 -3.1632 18 14 7.1270 -6.7377 -1.2948 19 1 6.8555 -7.3629 0.0245 20 1 7.6726 -7.7600 -2.2236 21 1 8.1150 -5.6415 -1.1297 22 6 1.2575 -7.1308 -0.9636 23 6 0.0001 -6.9649 -1.8194 24 6 -0.7310 -8.2415 -1.8700 25 7 -1.2954 -9.2269 -1.9069 26 6 1.5758 -2.4478 -0.0020 27 6 2.2308 -1.2084 -0.0019 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6850 2.1162 0.0004 32 1 4.1438 2.0812 -0.0052 33 1 5.4591 -2.3381 -0.0021 34 1 4.3008 -4.4725 -0.0027 35 1 2.8650 -6.0872 -2.8028 36 1 3.1906 -4.5323 -1.9999 37 1 6.3712 -5.3573 -3.6620 38 1 1.8964 -7.8978 -1.4014 39 1 0.9733 -7.4275 0.0460 40 1 -0.6387 -6.1978 -1.3816 41 1 0.2843 -6.6682 -2.8290 42 1 0.4968 -2.4939 -0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285142871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:16 Heat of formation + Delta-G solvation = 26.720879 kcal Electronic energy + Delta-G solvation = -26514.196874 eV Core-core repulsion = 22844.436905 eV Total energy + Delta-G solvation = -3669.759970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94926 -40.79639 -38.03687 -37.57315 -36.82380 -35.55631 -34.72373 -32.86109 -31.30885 -31.26582 -29.07284 -28.70881 -26.27017 -25.06804 -24.46280 -24.17566 -21.94669 -20.85097 -19.24366 -18.64887 -18.35772 -18.28834 -17.56342 -17.05974 -16.86017 -16.24014 -15.85579 -15.73899 -15.46817 -15.21747 -15.04883 -14.77859 -14.52424 -14.32256 -14.14549 -13.87159 -13.70789 -13.59655 -13.58302 -13.35222 -13.26823 -12.96265 -12.72901 -12.70488 -12.58773 -12.37712 -12.25617 -12.02529 -11.77823 -11.64302 -11.04619 -10.88746 -10.55641 -10.37773 -9.64423 -9.55359 -9.11901 -8.17533 -6.28061 -0.61488 -0.14849 1.00721 1.41774 1.47944 1.52072 1.55380 1.67565 1.78598 2.12806 2.26175 2.45616 3.12446 3.14808 3.17528 3.43608 3.58834 3.67144 3.79725 3.90310 4.11479 4.12922 4.21100 4.21834 4.50446 4.54728 4.59298 4.62619 4.82043 4.82954 4.86675 4.93156 5.01030 5.02380 5.04693 5.22109 5.31409 5.32613 5.43767 5.48889 5.66168 5.70942 5.81746 5.94063 6.09419 6.48868 6.55123 6.83217 7.03258 7.21346 7.41878 8.87765 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.005105 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.390366 B = 5483.319681 C = 8113.803617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.019 4.019 3 C -0.184 4.184 4 C 0.136 3.864 5 N -0.520 5.520 6 C 0.127 3.873 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.133 4.133 10 C 0.564 3.436 11 O -0.576 6.576 12 N -0.585 5.585 13 C 0.246 3.754 14 C -0.540 4.540 15 H 0.058 0.942 16 C 0.035 3.965 17 N -0.909 5.909 18 Si 0.938 3.062 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.122 3.878 23 C -0.031 4.031 24 C 0.246 3.754 25 N -0.489 5.489 26 C -0.043 4.043 27 C -0.129 4.129 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.191 0.809 33 H 0.126 0.874 34 H 0.150 0.850 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 13.703 3.160 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.036 4.036 5 N -0.229 5.229 6 C 0.007 3.993 7 C -0.142 4.142 8 C -0.084 4.084 9 C -0.136 4.136 10 C 0.353 3.647 11 O -0.458 6.458 12 N -0.313 5.313 13 C 0.125 3.875 14 C -0.578 4.578 15 H 0.076 0.924 16 C -0.167 4.167 17 N -0.547 5.547 18 Si 0.764 3.236 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.002 4.002 23 C -0.072 4.072 24 C -0.072 4.072 25 N -0.167 5.167 26 C -0.062 4.062 27 C -0.131 4.131 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.195 0.805 32 H 0.207 0.793 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.433 12.012 3.343 15.052 hybrid contribution 0.966 -0.392 0.039 1.043 sum -7.467 11.620 3.382 14.220 Atomic orbital electron populations 1.20999 0.87515 1.04808 1.04308 1.20611 0.98338 0.91236 0.92551 1.22123 0.95052 0.99835 1.03277 1.23650 0.92802 0.96507 0.90595 1.68058 1.41199 0.98434 1.15257 1.19114 0.90543 0.92536 0.97113 1.20678 1.00263 0.90436 1.02794 1.21730 0.93652 1.00027 0.92962 1.19901 0.94195 0.93703 1.05810 1.18385 0.81579 0.84447 0.80321 1.90700 1.34560 1.81064 1.39507 1.48050 1.33798 1.15370 1.34128 1.19329 0.82840 0.97411 0.87914 1.21596 0.93352 1.37774 1.05122 0.92365 1.25430 1.01292 0.95080 0.94885 1.69989 1.28546 1.42679 1.13523 0.85804 0.80633 0.78340 0.78779 1.19320 1.20793 1.20781 1.21246 0.92054 0.86088 1.00818 1.19698 0.95101 0.87439 1.04940 1.29183 0.92386 0.94220 0.91365 1.81219 1.11672 1.12957 1.10837 1.21436 1.00435 0.89472 0.94877 1.18785 0.93663 0.95006 1.05620 0.88838 0.90842 0.88109 0.80511 0.79254 0.85567 0.83229 0.94722 0.94699 0.92459 0.88919 0.90408 0.85991 0.85071 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.59 71.24 0.68 -0.96 16 2 C -0.02 -0.41 5.92 -19.60 -0.12 -0.53 16 3 C -0.18 -3.22 9.72 22.14 0.22 -3.01 16 4 C 0.14 2.96 11.14 85.04 0.95 3.91 16 5 N -0.52 -16.39 10.33 -188.45 -1.95 -18.34 16 6 C 0.13 4.41 6.61 40.37 0.27 4.68 16 7 C -0.12 -4.67 9.95 22.30 0.22 -4.45 16 8 C -0.06 -2.51 7.53 22.26 0.17 -2.35 16 9 C -0.13 -4.84 4.79 -20.10 -0.10 -4.94 16 10 C 0.56 20.89 7.15 86.77 0.62 21.51 16 11 O -0.58 -22.69 16.68 -3.90 -0.07 -22.76 16 12 N -0.58 -20.84 2.47 -829.63 -2.05 -22.89 16 13 C 0.25 10.24 4.65 85.63 0.40 10.64 16 14 C -0.54 -25.08 6.60 25.60 0.17 -24.91 16 15 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 16 C 0.04 1.70 5.46 84.65 0.46 2.16 16 17 N -0.91 -46.84 13.29 21.45 0.28 -46.56 16 18 Si 0.94 39.71 29.54 68.60 2.03 41.74 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.12 3.62 5.36 86.38 0.46 4.08 16 23 C -0.03 -0.70 5.99 28.79 0.17 -0.53 16 24 C 0.25 6.49 15.43 89.44 1.38 7.87 16 25 N -0.49 -15.50 18.54 20.01 0.37 -15.12 16 26 C -0.04 -1.32 9.02 22.82 0.21 -1.11 16 27 C -0.13 -3.84 5.74 -21.29 -0.12 -3.96 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.07 6.52 -2.39 -0.02 1.06 16 30 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.15 6.49 4.84 -2.91 -0.01 6.47 16 35 H 0.03 1.48 8.10 -2.39 -0.02 1.47 16 36 H 0.04 1.58 5.76 -2.39 -0.01 1.57 16 37 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 38 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 39 H 0.08 2.38 7.53 -2.39 -0.02 2.36 16 40 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.15 3.92 6.44 -2.91 -0.02 3.90 16 Total: -1.00 -63.92 362.88 5.72 -58.19 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.06 Total: 17.62 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.04 Total: 8.11 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.34 Total: -102.90 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.07 Total: -22.76 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -63.92 5.72 -58.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285142871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.913 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds