Wall clock time and date at job start Tue Mar 31 2020 14:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47293 * 240.00384 * 3 2 1 5 5 H 1.48506 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47178 * 119.99664 * 3 2 1 7 7 C 1.38809 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 202.23563 * 7 2 1 9 9 N 1.36936 * 120.00149 * 22.23456 * 7 2 1 10 10 C 1.46498 * 119.99731 * 34.65300 * 9 7 2 11 11 C 1.52998 * 109.47253 * 91.64800 * 10 9 7 12 12 H 1.08996 * 109.46999 * 304.99726 * 11 10 9 13 13 O 1.42909 * 109.47208 * 64.99671 * 11 10 9 14 14 C 1.52996 * 109.47327 * 184.99803 * 11 10 9 15 15 C 1.50699 * 109.47559 * 175.00291 * 14 11 10 16 16 C 1.38260 * 119.99549 * 89.99583 * 15 14 11 17 17 C 1.38227 * 120.02596 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.01120 * 0.02562 * 17 16 15 19 19 C 1.38328 * 119.98682 * 359.97438 * 18 17 16 20 20 Cl 1.73603 * 120.01131 * 179.72287 * 19 18 17 21 21 C 1.38196 * 119.99048 * 269.99957 * 15 14 11 22 22 C 1.46500 * 119.99911 * 214.64982 * 9 7 2 23 23 C 1.54271 * 110.03126 * 57.90998 * 22 9 7 24 24 C 1.54965 * 104.15710 * 217.13248 * 23 22 9 25 25 C 1.54884 * 102.77752 * 37.88776 * 24 23 22 26 26 C 1.53866 * 110.03390 * 300.69079 * 22 9 7 27 27 H 0.96998 * 120.00370 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 331.64318 * 10 9 7 29 29 H 1.08998 * 109.46771 * 211.64720 * 10 9 7 30 30 H 0.96702 * 113.99717 * 60.00269 * 13 11 10 31 31 H 1.08999 * 109.47037 * 54.99444 * 14 11 10 32 32 H 1.09004 * 109.46945 * 294.99976 * 14 11 10 33 33 H 1.07999 * 119.98813 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99338 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00452 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.00255 * 359.97438 * 21 15 14 37 37 H 1.09001 * 110.01553 * 179.29917 * 22 9 7 38 38 H 1.08996 * 110.48525 * 335.78303 * 23 22 9 39 39 H 1.08998 * 110.48550 * 98.42717 * 23 22 9 40 40 H 1.08994 * 110.72265 * 279.57043 * 24 23 22 41 41 H 1.09003 * 110.92151 * 156.29373 * 24 23 22 42 42 H 1.09003 * 110.48871 * 203.40046 * 25 24 23 43 43 H 1.09005 * 110.59756 * 80.81707 * 25 24 23 44 44 H 1.08999 * 110.03334 * 238.56836 * 26 22 9 45 45 H 1.08996 * 110.03478 * 0.02562 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0300 -1.2370 0.3534 9 7 1.4020 -2.3437 -0.4498 10 6 0.4427 -2.2763 -1.5550 11 6 1.1755 -2.4941 -2.8803 12 1 1.9902 -1.7753 -2.9675 13 8 1.7048 -3.8210 -2.9195 14 6 0.1982 -2.3005 -4.0414 15 6 0.9445 -2.3936 -5.3472 16 6 1.0880 -3.6168 -5.9756 17 6 1.7729 -3.7031 -7.1732 18 6 2.3152 -2.5664 -7.7429 19 6 2.1719 -1.3423 -7.1147 20 17 2.8590 0.0845 -7.8260 21 6 1.4854 -1.2564 -5.9164 22 6 1.7105 -3.6325 0.1748 23 6 1.3972 -3.5766 1.6843 24 6 2.5234 -4.4178 2.3366 25 6 3.7633 -4.0495 1.4846 26 6 3.2141 -3.9333 0.0477 27 1 -0.4850 0.8400 -0.0004 28 1 -0.0361 -1.2972 -1.5613 29 1 -0.3141 -3.0501 -1.4269 30 1 1.0344 -4.5141 -2.8468 31 1 -0.2722 -1.3205 -3.9607 32 1 -0.5678 -3.0752 -4.0046 33 1 0.6655 -4.5053 -5.5302 34 1 1.8850 -4.6588 -7.6634 35 1 2.8499 -2.6338 -8.6788 36 1 1.3729 -0.3010 -5.4256 37 1 1.1300 -4.4247 -0.2980 38 1 1.4326 -2.5481 2.0434 39 1 0.4223 -4.0195 1.8882 40 1 2.3038 -5.4826 2.2588 41 1 2.6708 -4.1304 3.3776 42 1 4.5144 -4.8372 1.5435 43 1 4.1835 -3.0979 1.8105 44 1 3.3633 -4.8719 -0.4860 45 1 3.7144 -3.1203 -0.4783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287844635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:07 Heat of formation + Delta-G solvation = -31.345537 kcal Electronic energy + Delta-G solvation = -25721.443894 eV Core-core repulsion = 22150.273469 eV Total energy + Delta-G solvation = -3571.170425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.45021 -37.93367 -36.77200 -36.24763 -33.94027 -32.56923 -30.98222 -30.64707 -29.05845 -27.76820 -26.61104 -25.64325 -23.05587 -22.57712 -21.22813 -20.60302 -19.84616 -19.01545 -17.09545 -16.41177 -15.74644 -15.50560 -15.34114 -15.07741 -14.69825 -14.37359 -14.07836 -13.89363 -13.72597 -13.38414 -13.13348 -12.86823 -12.62697 -12.47039 -11.80432 -11.45346 -11.43662 -11.33145 -11.13770 -11.06586 -10.86493 -10.78631 -10.69777 -10.40372 -10.32364 -10.22196 -10.14439 -9.99477 -9.88523 -9.85243 -9.56550 -9.30617 -8.75532 -8.52227 -8.43764 -6.52525 -5.77785 -3.31224 1.24463 1.34311 2.16108 3.36553 3.42723 3.46320 3.70070 4.47873 4.76629 4.85226 5.04463 5.14684 5.25149 5.31455 5.37735 5.43295 5.52298 5.53828 5.57615 5.67673 5.75625 5.92953 5.98096 6.20071 6.21061 6.25792 6.30807 6.32521 6.35923 6.38166 6.45252 6.53766 6.63324 6.65143 6.66274 6.72394 6.89578 6.93366 7.06584 7.08882 7.32821 7.39367 7.54752 7.85877 8.33600 8.52783 9.20690 9.85318 10.41707 11.20945 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004036 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.519566 B = 6936.573519 C = 8259.845776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.007 3.993 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.062 0.938 9 N -0.570 5.570 10 C 0.118 3.882 11 C 0.092 3.908 12 H 0.094 0.906 13 O -0.555 6.555 14 C -0.116 4.116 15 C -0.046 4.046 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.126 4.126 19 C -0.031 4.031 20 Cl -0.081 7.081 21 C -0.111 4.111 22 C 0.181 3.819 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.254 0.746 28 H 0.107 0.893 29 H 0.023 0.977 30 H 0.355 0.645 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -7.673 -10.685 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.193 4.193 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.288 5.288 10 C -0.010 4.010 11 C 0.031 3.969 12 H 0.112 0.888 13 O -0.358 6.358 14 C -0.154 4.154 15 C -0.047 4.047 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.144 4.144 19 C -0.058 4.058 20 Cl -0.052 7.052 21 C -0.130 4.130 22 C 0.073 3.927 23 C -0.172 4.172 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.124 0.876 29 H 0.042 0.958 30 H 0.199 0.801 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.254 -7.052 -10.778 12.942 hybrid contribution 0.029 0.846 -0.073 0.850 sum 1.282 -6.206 -10.851 12.566 Atomic orbital electron populations 1.69954 1.05378 1.25627 1.52449 1.25044 0.94947 0.98412 1.00848 0.86562 0.79324 0.83772 0.78381 1.20959 1.21715 1.20821 1.18915 0.94584 0.85560 1.38144 0.92074 1.43789 1.49385 1.02158 1.33450 1.21646 0.90865 1.03478 0.84964 1.22891 0.96538 0.83820 0.93701 0.88764 1.86617 1.37418 1.15387 1.96422 1.21465 0.98340 1.03599 0.92037 1.19893 0.96761 0.92298 0.95702 1.21092 0.98890 0.97354 0.94782 1.21043 0.97897 0.97769 0.96010 1.20933 1.01736 0.91058 1.00704 1.20875 1.00944 0.87922 0.96043 1.98357 1.83736 1.39485 1.83602 1.21013 0.98139 0.99738 0.94066 1.20935 0.92770 0.87946 0.91020 1.22838 0.95740 1.00865 0.97797 1.22435 0.96652 0.98845 0.98184 1.22289 0.96709 1.00029 0.96771 1.22499 0.98643 1.00338 0.94987 0.93626 0.87603 0.95822 0.80075 0.89870 0.90944 0.85684 0.85520 0.85532 0.85019 0.93671 0.89831 0.93825 0.92944 0.93021 0.93562 0.92206 0.93706 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 11.34 55.49 0.63 -23.49 16 2 C 0.01 0.17 4.95 -17.43 -0.09 0.09 16 3 Si 0.89 21.06 29.61 -169.99 -5.03 16.03 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.18 7.64 -15.06 -0.12 -6.29 16 8 H 0.06 1.61 7.24 -52.49 -0.38 1.23 16 9 N -0.57 -12.97 2.36 -164.40 -0.39 -13.36 16 10 C 0.12 2.46 4.92 -4.04 -0.02 2.44 16 11 C 0.09 1.64 3.20 -26.73 -0.09 1.55 16 12 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 13 O -0.56 -9.30 12.30 -35.23 -0.43 -9.74 16 14 C -0.12 -1.70 5.03 -27.89 -0.14 -1.84 16 15 C -0.05 -0.65 4.97 -104.63 -0.52 -1.17 16 16 C -0.10 -1.28 9.40 -39.58 -0.37 -1.65 16 17 C -0.11 -1.24 10.05 -39.59 -0.40 -1.63 16 18 C -0.13 -1.51 9.83 -39.55 -0.39 -1.90 16 19 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 20 Cl -0.08 -1.04 28.96 -51.86 -1.50 -2.54 16 21 C -0.11 -1.62 9.49 -39.55 -0.38 -1.99 16 22 C 0.18 3.63 2.93 -66.81 -0.20 3.43 16 23 C -0.13 -2.63 6.42 -25.03 -0.16 -2.79 16 24 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 25 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 26 C -0.13 -2.36 6.16 -25.62 -0.16 -2.52 16 27 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.11 2.54 5.35 -51.93 -0.28 2.26 16 29 H 0.02 0.47 7.96 -51.93 -0.41 0.05 16 30 H 0.35 4.75 9.05 45.56 0.41 5.16 16 31 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 32 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.04 0.86 7.85 -51.93 -0.41 0.45 16 38 H 0.08 1.94 7.03 -51.93 -0.37 1.57 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.50 7.04 -51.93 -0.37 1.13 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -27.35 376.13 -11.09 -38.43 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.42 Total: 8.37 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.61 Total: -19.38 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.24 Total: -36.84 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.43 Total: -9.74 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.35 -11.09 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.089 kcal (2) G-P(sol) polarization free energy of solvation -27.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds