Wall clock time and date at job start Tue Mar 31 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47293 * 240.00384 * 3 2 1 5 5 H 1.48506 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47178 * 119.99664 * 3 2 1 7 7 C 1.38809 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 202.23563 * 7 2 1 9 9 N 1.36936 * 120.00149 * 22.23456 * 7 2 1 10 10 C 1.46498 * 119.99731 * 34.65300 * 9 7 2 11 11 C 1.52998 * 109.47253 * 91.64800 * 10 9 7 12 12 H 1.08996 * 109.46999 * 304.99726 * 11 10 9 13 13 O 1.42909 * 109.47208 * 64.99671 * 11 10 9 14 14 C 1.52996 * 109.47327 * 184.99803 * 11 10 9 15 15 C 1.50699 * 109.47559 * 175.00291 * 14 11 10 16 16 C 1.38260 * 119.99549 * 89.99583 * 15 14 11 17 17 C 1.38227 * 120.02596 * 180.02562 * 16 15 14 18 18 C 1.38232 * 120.01120 * 0.02562 * 17 16 15 19 19 C 1.38328 * 119.98682 * 359.97438 * 18 17 16 20 20 Cl 1.73603 * 120.01131 * 179.72287 * 19 18 17 21 21 C 1.38196 * 119.99048 * 269.99957 * 15 14 11 22 22 C 1.46500 * 119.99911 * 214.64982 * 9 7 2 23 23 C 1.54271 * 110.03126 * 57.90998 * 22 9 7 24 24 C 1.54965 * 104.15710 * 217.13248 * 23 22 9 25 25 C 1.54884 * 102.77752 * 37.88776 * 24 23 22 26 26 C 1.53866 * 110.03390 * 300.69079 * 22 9 7 27 27 H 0.96998 * 120.00370 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47328 * 331.64318 * 10 9 7 29 29 H 1.08998 * 109.46771 * 211.64720 * 10 9 7 30 30 H 0.96702 * 113.99717 * 60.00269 * 13 11 10 31 31 H 1.08999 * 109.47037 * 54.99444 * 14 11 10 32 32 H 1.09004 * 109.46945 * 294.99976 * 14 11 10 33 33 H 1.07999 * 119.98813 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.99338 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00452 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.00255 * 359.97438 * 21 15 14 37 37 H 1.09001 * 110.01553 * 179.29917 * 22 9 7 38 38 H 1.08996 * 110.48525 * 335.78303 * 23 22 9 39 39 H 1.08998 * 110.48550 * 98.42717 * 23 22 9 40 40 H 1.08994 * 110.72265 * 279.57043 * 24 23 22 41 41 H 1.09003 * 110.92151 * 156.29373 * 24 23 22 42 42 H 1.09003 * 110.48871 * 203.40046 * 25 24 23 43 43 H 1.09005 * 110.59756 * 80.81707 * 25 24 23 44 44 H 1.08999 * 110.03334 * 238.56836 * 26 22 9 45 45 H 1.08996 * 110.03478 * 0.02562 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0300 -1.2370 0.3534 9 7 1.4020 -2.3437 -0.4498 10 6 0.4427 -2.2763 -1.5550 11 6 1.1755 -2.4941 -2.8803 12 1 1.9902 -1.7753 -2.9675 13 8 1.7048 -3.8210 -2.9195 14 6 0.1982 -2.3005 -4.0414 15 6 0.9445 -2.3936 -5.3472 16 6 1.0880 -3.6168 -5.9756 17 6 1.7729 -3.7031 -7.1732 18 6 2.3152 -2.5664 -7.7429 19 6 2.1719 -1.3423 -7.1147 20 17 2.8590 0.0845 -7.8260 21 6 1.4854 -1.2564 -5.9164 22 6 1.7105 -3.6325 0.1748 23 6 1.3972 -3.5766 1.6843 24 6 2.5234 -4.4178 2.3366 25 6 3.7633 -4.0495 1.4846 26 6 3.2141 -3.9333 0.0477 27 1 -0.4850 0.8400 -0.0004 28 1 -0.0361 -1.2972 -1.5613 29 1 -0.3141 -3.0501 -1.4269 30 1 1.0344 -4.5141 -2.8468 31 1 -0.2722 -1.3205 -3.9607 32 1 -0.5678 -3.0752 -4.0046 33 1 0.6655 -4.5053 -5.5302 34 1 1.8850 -4.6588 -7.6634 35 1 2.8499 -2.6338 -8.6788 36 1 1.3729 -0.3010 -5.4256 37 1 1.1300 -4.4247 -0.2980 38 1 1.4326 -2.5481 2.0434 39 1 0.4223 -4.0195 1.8882 40 1 2.3038 -5.4826 2.2588 41 1 2.6708 -4.1304 3.3776 42 1 4.5144 -4.8372 1.5435 43 1 4.1835 -3.0979 1.8105 44 1 3.3633 -4.8719 -0.4860 45 1 3.7144 -3.1203 -0.4783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287844635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:06 Heat of formation + Delta-G solvation = -44.537573 kcal Electronic energy + Delta-G solvation = -25722.015943 eV Core-core repulsion = 22150.273469 eV Total energy + Delta-G solvation = -3571.742474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51319 -39.46479 -38.08152 -37.34763 -35.66793 -33.70282 -32.84449 -31.63223 -30.40368 -29.27993 -28.15948 -27.26887 -24.60680 -23.57801 -22.59156 -21.92798 -21.27690 -20.69816 -18.50009 -17.75235 -17.23225 -16.89952 -16.62619 -16.28031 -16.21889 -15.99870 -15.58279 -15.26080 -14.95865 -14.61990 -14.46498 -14.22377 -14.00303 -13.90598 -13.26423 -12.93629 -12.86014 -12.69887 -12.45030 -12.44509 -12.40385 -12.19580 -12.11420 -11.89550 -11.80404 -11.75393 -11.68906 -11.56250 -11.54237 -11.32009 -11.15270 -10.76792 -10.43569 -9.79428 -9.54576 -8.42258 -7.74030 -5.30728 0.25022 0.34493 1.14882 1.42288 1.46091 1.50967 2.52326 2.70384 3.26651 3.56157 3.78443 3.87234 3.93622 4.05090 4.07161 4.12365 4.29175 4.33444 4.39541 4.48667 4.55066 4.64480 4.73124 4.77735 4.82644 4.91598 4.97118 4.98840 5.04201 5.06173 5.10497 5.24684 5.27056 5.29373 5.37640 5.41561 5.47658 5.58903 5.67454 5.72418 5.73432 5.75430 5.89218 5.92966 6.54553 7.11419 7.26729 8.00654 8.48327 9.18488 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004036 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.519566 B = 6936.573519 C = 8259.845776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.035 4.035 3 Si 0.935 3.065 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.047 0.953 9 N -0.583 5.583 10 C 0.118 3.882 11 C 0.116 3.884 12 H 0.053 0.947 13 O -0.559 6.559 14 C -0.104 4.104 15 C -0.062 4.062 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.125 4.125 19 C -0.045 4.045 20 Cl -0.082 7.082 21 C -0.133 4.133 22 C 0.175 3.825 23 C -0.133 4.133 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.117 4.117 27 H 0.249 0.751 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.374 0.626 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -10.705 -11.697 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.232 4.232 3 Si 0.764 3.236 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.064 0.936 9 N -0.302 5.302 10 C -0.008 4.008 11 C 0.054 3.946 12 H 0.071 0.929 13 O -0.364 6.364 14 C -0.142 4.142 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.143 4.143 19 C -0.072 4.072 20 Cl -0.053 7.053 21 C -0.152 4.152 22 C 0.068 3.932 23 C -0.173 4.173 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.221 0.779 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.715 -10.105 -11.794 15.626 hybrid contribution -0.090 1.694 0.204 1.708 sum 1.625 -8.412 -11.590 14.413 Atomic orbital electron populations 1.70054 1.06103 1.25513 1.54235 1.25481 0.95498 1.00340 1.01890 0.85844 0.78264 0.81465 0.77986 1.21335 1.21902 1.20703 1.18921 0.93959 0.86839 1.36813 0.93565 1.43972 1.49367 1.02417 1.34405 1.21602 0.91016 1.02122 0.86102 1.22258 0.95129 0.83798 0.93398 0.92887 1.86570 1.38344 1.15142 1.96377 1.21270 0.97964 1.03761 0.91251 1.19866 0.97552 0.93112 0.95691 1.21389 0.98530 0.97133 0.95070 1.21463 0.96322 0.98922 0.95375 1.21289 1.01235 0.90485 1.01297 1.21028 1.01345 0.88741 0.96050 1.98350 1.83715 1.39783 1.83469 1.21039 0.99546 0.99599 0.95037 1.21130 0.93883 0.87002 0.91167 1.22755 0.97530 0.99098 0.97878 1.22386 0.94553 0.99720 0.98238 1.22272 0.97628 1.00207 0.95432 1.22374 0.97298 0.99862 0.96101 0.94208 0.90765 0.94626 0.77897 0.91259 0.88398 0.83439 0.82013 0.83314 0.86627 0.92052 0.94089 0.93302 0.90166 0.92045 0.90620 0.94058 0.91801 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.39 11.34 21.65 0.25 -51.15 16 2 C -0.04 -1.93 4.95 84.86 0.42 -1.51 16 3 Si 0.93 44.91 29.61 68.60 2.03 46.94 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.23 -12.40 7.64 84.03 0.64 -11.76 16 8 H 0.05 2.55 7.24 -2.91 -0.02 2.53 16 9 N -0.58 -27.04 2.36 -674.04 -1.59 -28.63 16 10 C 0.12 5.03 4.92 86.38 0.42 5.45 16 11 C 0.12 4.16 3.20 30.59 0.10 4.26 16 12 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 13 O -0.56 -17.78 12.30 -148.98 -1.83 -19.61 16 14 C -0.10 -3.02 5.03 29.85 0.15 -2.87 16 15 C -0.06 -1.70 4.97 -19.87 -0.10 -1.80 16 16 C -0.10 -2.27 9.40 22.27 0.21 -2.06 16 17 C -0.10 -1.97 10.05 22.27 0.22 -1.75 16 18 C -0.12 -2.69 9.83 22.29 0.22 -2.47 16 19 C -0.05 -1.20 6.32 22.32 0.14 -1.06 16 20 Cl -0.08 -2.10 28.96 -2.72 -0.08 -2.18 16 21 C -0.13 -3.96 9.49 22.29 0.21 -3.75 16 22 C 0.17 6.87 2.93 45.71 0.13 7.00 16 23 C -0.13 -5.17 6.42 31.70 0.20 -4.97 16 24 C -0.11 -3.40 6.91 31.91 0.22 -3.18 16 25 C -0.12 -3.79 6.83 31.67 0.22 -3.57 16 26 C -0.12 -4.26 6.16 31.32 0.19 -4.07 16 27 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.07 3.72 5.35 -2.39 -0.01 3.70 16 29 H 0.04 1.39 7.96 -2.39 -0.02 1.38 16 30 H 0.37 8.83 9.05 -74.06 -0.67 8.16 16 31 H 0.07 2.18 8.09 -2.39 -0.02 2.16 16 32 H 0.10 2.30 8.09 -2.38 -0.02 2.28 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.06 2.20 7.85 -2.39 -0.02 2.18 16 38 H 0.04 1.93 7.03 -2.39 -0.02 1.92 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.04 1.57 7.04 -2.39 -0.02 1.56 16 Total: -1.00 -61.64 376.13 2.69 -58.95 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.31 Total: 23.77 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 3.61 Total: -28.10 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.35 Total: -79.78 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.83 Total: -19.61 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -61.64 2.69 -58.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.414 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds