Wall clock time and date at job start Tue Mar 31 2020 14:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47338 * 300.00351 * 3 2 1 6 6 H 1.48510 * 109.46694 * 59.99924 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00002 * 159.36563 * 7 2 1 9 9 N 1.36936 * 120.00339 * 339.35624 * 7 2 1 10 10 C 1.46509 * 119.99828 * 321.63006 * 9 7 2 11 11 C 1.52999 * 109.47305 * 269.99699 * 10 9 7 12 12 H 1.09005 * 109.46860 * 59.99763 * 11 10 9 13 13 O 1.42903 * 109.47057 * 300.00288 * 11 10 9 14 14 C 1.52996 * 109.47441 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47121 * 185.00131 * 14 11 10 16 16 C 1.38261 * 119.99299 * 90.00310 * 15 14 11 17 17 C 1.38216 * 120.02596 * 179.97438 * 16 15 14 18 18 C 1.38236 * 120.01513 * 0.02562 * 17 16 15 19 19 C 1.38332 * 119.98446 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01428 * 179.97438 * 19 18 17 21 21 C 1.38186 * 119.99186 * 269.72311 * 15 14 11 22 22 C 1.46497 * 120.00395 * 141.63128 * 9 7 2 23 23 C 1.54967 * 110.91853 * 307.52601 * 22 9 7 24 24 C 1.54272 * 104.15882 * 156.29182 * 23 22 9 25 25 C 1.53870 * 106.64231 * 336.45072 * 24 23 22 26 26 C 1.54268 * 106.59632 * 359.97065 * 25 24 23 27 27 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46778 * 29.99998 * 10 9 7 29 29 H 1.08997 * 109.46778 * 149.99983 * 10 9 7 30 30 H 0.96704 * 113.99883 * 299.99721 * 13 11 10 31 31 H 1.08997 * 109.46870 * 305.00214 * 14 11 10 32 32 H 1.09004 * 109.47019 * 64.99733 * 14 11 10 33 33 H 1.08003 * 119.98817 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.99574 * 180.02562 * 17 16 15 35 35 H 1.08000 * 120.00920 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.00971 * 0.02562 * 21 15 14 37 37 H 1.09004 * 110.67600 * 184.22816 * 22 9 7 38 38 H 1.09001 * 110.47391 * 37.64719 * 23 22 9 39 39 H 1.08997 * 110.53210 * 274.97595 * 23 22 9 40 40 H 1.08997 * 110.03114 * 217.13645 * 24 23 22 41 41 H 1.09004 * 110.02773 * 95.75715 * 24 23 22 42 42 H 1.08993 * 110.03532 * 119.25232 * 25 24 23 43 43 H 1.09000 * 110.03298 * 240.64098 * 25 24 23 44 44 H 1.09007 * 110.48703 * 142.28968 * 26 25 24 45 45 H 1.08997 * 110.48990 * 264.79659 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0382 -1.2321 -0.3302 9 7 1.3914 -2.3502 0.4170 10 6 0.4671 -2.3125 1.5531 11 6 1.2411 -2.5626 2.8489 12 1 2.0010 -1.7910 2.9729 13 8 1.8696 -3.8446 2.7885 14 6 0.2758 -2.5239 4.0353 15 6 1.0536 -2.6475 5.3201 16 6 1.5185 -1.5127 5.9585 17 6 2.2315 -1.6252 7.1372 18 6 2.4807 -2.8727 7.6782 19 6 2.0158 -4.0085 7.0399 20 17 2.3289 -5.5755 7.7182 21 6 1.2971 -3.8948 5.8629 22 6 1.6537 -3.6161 -0.2721 23 6 1.4318 -3.4711 -1.7990 24 6 2.2918 -4.5948 -2.4136 25 6 3.3856 -4.9262 -1.3834 26 6 3.1533 -3.9919 -0.1781 27 1 -0.4849 0.8401 0.0004 28 1 -0.0123 -1.3346 1.5991 29 1 -0.2927 -3.0841 1.4290 30 1 1.2520 -4.5806 2.6784 31 1 -0.2690 -1.5798 4.0297 32 1 -0.4299 -3.3510 3.9566 33 1 1.3237 -0.5378 5.5365 34 1 2.5941 -0.7384 7.6357 35 1 3.0382 -2.9606 8.5990 36 1 0.9303 -4.7810 5.3662 37 1 1.0296 -4.4120 0.1343 38 1 1.7759 -2.4958 -2.1433 39 1 0.3806 -3.6156 -2.0480 40 1 2.7459 -4.2514 -3.3431 41 1 1.6769 -5.4750 -2.6016 42 1 3.3010 -5.9669 -1.0708 43 1 4.3706 -4.7445 -1.8132 44 1 3.3573 -4.5159 0.7557 45 1 3.7775 -3.1020 -0.2592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287844636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:10 Heat of formation + Delta-G solvation = -33.940817 kcal Electronic energy + Delta-G solvation = -25664.356991 eV Core-core repulsion = 22093.074027 eV Total energy + Delta-G solvation = -3571.282964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.45790 -37.87778 -36.76073 -36.27728 -34.00671 -32.55079 -31.01595 -30.67874 -29.09172 -27.76878 -26.61482 -25.61393 -23.12553 -22.61736 -21.24485 -20.59482 -19.44856 -19.32255 -17.08195 -16.40030 -15.77976 -15.57286 -15.29638 -15.10045 -14.77869 -14.37807 -14.08291 -13.89194 -13.69062 -13.42923 -13.15840 -12.83766 -12.58578 -12.41827 -11.83215 -11.47813 -11.45399 -11.35855 -11.21789 -11.07459 -10.93896 -10.80763 -10.78205 -10.56811 -10.39498 -10.24483 -10.15382 -9.95668 -9.90178 -9.67908 -9.53197 -9.25706 -8.78319 -8.51341 -8.46376 -6.47886 -5.78370 -3.36786 1.22495 1.34792 2.12999 3.31976 3.42167 3.45700 3.69198 4.45667 4.76393 4.83784 5.01135 5.18636 5.24016 5.30485 5.36419 5.44604 5.47904 5.49703 5.54777 5.66037 5.85019 5.86674 5.97306 6.18178 6.23984 6.24972 6.26302 6.31150 6.31314 6.36587 6.43634 6.50695 6.62393 6.63694 6.66518 6.72296 6.87802 6.93750 7.07550 7.14747 7.26489 7.38974 7.49687 7.85053 8.35232 8.53732 9.20412 9.82833 10.41942 11.19420 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.003976 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.183850 B = 7040.652194 C = 8690.495673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.011 3.989 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.566 5.566 10 C 0.121 3.879 11 C 0.092 3.908 12 H 0.094 0.906 13 O -0.552 6.552 14 C -0.117 4.117 15 C -0.046 4.046 16 C -0.115 4.115 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.032 4.032 20 Cl -0.082 7.082 21 C -0.098 4.098 22 C 0.182 3.818 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.131 4.131 27 H 0.253 0.747 28 H 0.100 0.900 29 H 0.025 0.975 30 H 0.355 0.645 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 -7.519 10.722 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.189 4.189 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.284 5.284 10 C -0.006 4.006 11 C 0.031 3.969 12 H 0.112 0.888 13 O -0.355 6.355 14 C -0.155 4.155 15 C -0.047 4.047 16 C -0.134 4.134 17 C -0.126 4.126 18 C -0.145 4.145 19 C -0.059 4.059 20 Cl -0.053 7.053 21 C -0.117 4.117 22 C 0.075 3.925 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.171 4.171 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.199 0.801 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.435 -7.138 10.826 13.046 hybrid contribution -0.008 0.517 0.016 0.517 sum 1.426 -6.622 10.842 12.784 Atomic orbital electron populations 1.69999 1.05434 1.25429 1.52329 1.25157 0.94961 0.98504 1.00277 0.86422 0.79964 0.84330 0.77310 1.20097 1.21728 1.21529 1.18955 0.93820 0.85199 1.39528 0.92229 1.43579 1.51323 1.03404 1.30055 1.21570 0.91046 1.02912 0.85054 1.22845 0.95411 0.85308 0.93353 0.88822 1.86620 1.37354 1.15579 1.95989 1.21475 0.98197 1.03453 0.92367 1.19885 0.97053 0.92085 0.95650 1.21226 0.98003 0.98887 0.95243 1.21050 0.98589 0.96766 0.96154 1.20941 1.01547 0.91262 1.00705 1.20884 1.02481 0.85979 0.96534 1.98351 1.94735 1.27308 1.84932 1.20874 0.98744 0.98126 0.93929 1.21265 0.92823 0.88076 0.90364 1.22709 0.97742 0.98443 0.98100 1.22083 0.97382 0.98672 0.97949 1.22075 0.97952 0.98957 0.97055 1.22714 1.00080 0.98380 0.95902 0.93737 0.88239 0.95685 0.80071 0.89820 0.91042 0.85402 0.85434 0.85526 0.85282 0.93403 0.90423 0.93455 0.93152 0.93278 0.93185 0.93237 0.92366 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.48 55.49 0.64 -23.37 16 2 C 0.01 0.28 4.97 -17.43 -0.09 0.19 16 3 Si 0.89 20.78 29.60 -169.99 -5.03 15.75 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.25 7.78 -15.06 -0.12 -6.37 16 8 H 0.06 1.58 6.78 -52.49 -0.36 1.23 16 9 N -0.57 -12.90 2.41 -163.36 -0.39 -13.29 16 10 C 0.12 2.52 4.98 -4.04 -0.02 2.50 16 11 C 0.09 1.63 3.23 -26.73 -0.09 1.54 16 12 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 13 O -0.55 -9.40 11.71 -35.23 -0.41 -9.81 16 14 C -0.12 -1.67 5.03 -27.89 -0.14 -1.81 16 15 C -0.05 -0.64 4.96 -104.63 -0.52 -1.16 16 16 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 17 C -0.11 -1.26 10.05 -39.59 -0.40 -1.66 16 18 C -0.13 -1.50 9.83 -39.55 -0.39 -1.88 16 19 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 20 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 21 C -0.10 -1.31 9.20 -39.55 -0.36 -1.67 16 22 C 0.18 3.67 2.87 -65.90 -0.19 3.48 16 23 C -0.13 -2.60 6.35 -25.03 -0.16 -2.76 16 24 C -0.12 -2.01 6.80 -25.61 -0.17 -2.19 16 25 C -0.12 -1.97 6.80 -25.61 -0.17 -2.15 16 26 C -0.13 -2.48 6.39 -25.07 -0.16 -2.64 16 27 H 0.25 6.64 8.31 -40.82 -0.34 6.31 16 28 H 0.10 2.37 5.55 -51.93 -0.29 2.08 16 29 H 0.02 0.49 7.92 -51.93 -0.41 0.08 16 30 H 0.35 4.95 9.05 45.56 0.41 5.36 16 31 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 38 H 0.08 1.77 7.07 -51.93 -0.37 1.40 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.09 7.66 -51.93 -0.40 0.69 16 45 H 0.06 1.37 6.67 -51.93 -0.35 1.03 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -27.28 374.84 -11.03 -38.31 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.37 Total: 8.39 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.61 Total: -19.15 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.24 Total: -36.66 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.41 Total: -9.81 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.28 -11.03 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287844636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.371 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds